BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478652
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12910.1 | Symbols: | NAC (No Apical Meristem) domain trans... 1454 0.0
> AT3G12910.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:4109375-4110648
FORWARD LENGTH=954
Length=954
Score = 1454 bits (787), Expect = 0.0
Identities = 907/963 (94%), Gaps = 16/963 (2%)
Strand=Plus/Plus
Query 1 GTGAGTCCAAAGAGCAAAAAGGAGGAAATAGAAAAATCAAAGCCATGGAGAAGATGATAG 60
||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1 GTGAGTCCAAAGAGCAAAAAGGAAGAAATAG--AAACCAAAGCCATGGAGAAGATGATAG 58
Query 61 AATCACGGGACAACACAAGAGAATCAGAAGACGAGGAAGTGTTAAAGCTTCCAGGGTTTA 120
|| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 59 AACCACGGGACAACACAAGAGAATCAGAAGATGAGGATGCGTTAAAGCTTCCAGGGTTTA 118
Query 121 GGTTTCATCCAACGGACGAGGAGCTTGTAGGGTATTATCTCTCTAAGAAAGTACTTCT-a 179
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 119 GGTTTCATCCGACGGATGAGGAGCTTGTAGGGTATTATCTCTCTAAAAAAGTGCTTCTCA 178
Query 180 aaaaaaCCAAGCAAGATCGATGAGATTGTTAGCCAAATCGATATCTATAAATTCGATCCG 239
|||||| | |||||||| |||||||| || |||||||| |||||||||||||| ||||||
Sbjct 179 AAAAAA-CGAGCAAGATTGATGAGATCGTCAGCCAAATTGATATCTATAAATTTGATCCG 237
Query 240 TGGGATCTTCCAAGGTCGAGGAATACGGAGAAGGAAAGCTACTTCTTCTGCAAGAGAGGA 299
|||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||
Sbjct 238 TGGGATCTTCCAAGGTCGAGGAATACAGAGAAGGAGAGCTACTTCTTTTGTAAGAGAGGA 297
Query 300 AGGAAATATAGAAACAGCATAAGACCGAACCGAGTGACTGGTTCTGGTTTCTGGAAAGCC 359
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AGGAAATACAGAAACAGCATAAGACCGAACCGAGTGACTGGTTCCGGTTTCTGGAAAGCC 357
Query 360 ACAGGGATAGACAAGCCTATCTATTCCGATGGATCCAATAAAGCCGTGATCGGTCTAAAG 419
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 ACAGGGATAGACAAGCCTGTCTATTCCGATGGATCCAACAAAGCCGTGATCGGTCTAAAG 417
Query 420 AAGACACTCGTTTATTACCTTGGAAGCGCCGGGAAAGGAAGCAAGACGGATTGGATGATG 479
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 418 AAGACACTCGTTTATTACCTAGGAAGCGCCGGGAAAGGAAACAAGACGGATTGGATGATG 477
Query 480 CACGAGTTTCGTCTCCCCACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAAC 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAAC 537
Query 540 CCTACTCCAACTTCCTTGCTACACGCAGAAGTATGGACGTTATGTCGGATATTCAAGAGA 599
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 538 CCTACTCCAACTTCCTTGCTACACGCGGAAGTATGGACGTTATGCCGGATATTTAAGAGA 597
Query 600 AATGTGTCGAGTCGAAAATACACTCCGGACTGGAGAGAATTAGCAAATGGCAAACGTGTG 659
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACTGTGTCTAGTCGAAAATACACTCCGGACTGGAGAGAATTAGCAAATGGCAAACGTGTG 657
Query 660 AAGCAGCAACAATCTAATTACCAAGAAGCTTATTATATCAATTTTGGGGACAATGAAAGT 719
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 658 AAGCAGCAACAATCTAATTACCAAGAAGCTTAT-ATA--AATTTTGGGGACAATGAAAGT 714
Query 720 AGTAGTA---CCAATGTGATCAACGTAAGGGAAGGCAAAGGGAACTACGAGAGAAGCGTT 776
||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 715 AGTAGTAGTACCAACGTGATGAACGTTAGGGAAGGCAAAGGGAACTACGAGAGAAGCGTT 774
Query 777 TTCCAGCTTCAACAAACGCCTTATCAACATCAAAACCAGCCAATTCTCATGGACACCACA 836
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TTCCAGCTTCAGCAAACGCCTTATCAACATCAAAACCAGCCAATTCTCATGGACACCACA 834
Query 837 CACGTTGATAATTCGTTTCAACATTTCTCCAACGATAACATTCACGAAGAAACCTACGAG 896
||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 835 CACGTTGAT--T-CGTTTCAACATTTCTCCAACGATAACATTCACCATGAAACCTACGAG 891
Query 897 AATTGG--G-ACGAGCTTCGATCGGTTGTGGAATTTGCTTTCCCACCTTCTTCTCTTAGT 953
| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 892 ACTTGGCCGGACGAGCTTCGATCGGTTGTGGAATTTGCTTTCCCACCTTCTTTTCTTAGT 951
Query 954 TAG 956
|||
Sbjct 952 TAG 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5