BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478657
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12950.1 | Symbols: | Trypsin family protein | chr3:4132528... 2854 0.0
> AT3G12950.1 | Symbols: | Trypsin family protein | chr3:4132528-4135134
REVERSE LENGTH=2175
Length=2175
Score = 2854 bits (1545), Expect = 0.0
Identities = 1701/1778 (96%), Gaps = 3/1778 (0%)
Strand=Plus/Plus
Query 1 TCGTGAGAATTCAAGGAACATTTTTTCTCCGATTTGATTACCCATTAACCAGAAACAAAA 60
||||||||||||||||||||| |||||| |||| |||||||||| ||| | |||| | ||
Sbjct 137 TCGTGAGAATTCAAGGAACATCTTTTCTTCGATGTGATTACCCAATAAGCTGAAA-ACAA 195
Query 61 AAGGCTTGATTTTGTGATTACTCTGGCTTAACAATGCATCAGTATGGGTCAACGGGTCAA 120
||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 196 AAGGCGTGATTTTGTGATTACTCTGGCGTAATAATGCCTCAGTATGGGTCAACGGGTCAA 255
Query 121 CACTGCGAGTTCACGGCGGCGTCTTACTTCTCGTGGCCGACTTCAAGCAGGCTTAGCAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 256 CACTGCGAGTTCACGGCGGCGTCTTACTTCTCGTGGCCGACTTCAAGCAGGCTAAGCAAC 315
Query 181 GCGGCGGAGGAAAGAGCTAACTATTTCTCAAACTTGCAGAAAgaggaggaggaggatgag 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 316 GCCGCGGAGGAAAGAGCTAACTATTTCTCAAACTTGCAGAAAGAGGAGGATGATGATGAT 375
Query 241 gaggTTTCTCCTGAACCAG-CATCCACAGAGCCTAAAGGGCAACGAGCCACTACTTTGCT 299
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 376 GAGGTTTCTCCTGAACCAGTC-TCCACAGAGCCTAAAGGGCAACGAGCCACTACTTTACT 434
Query 300 TGAGCTCATGACTATAAGAGCTTTCCACAGCAAGATCTTGCGTTGTTATAGTCTTGGAAC 359
|||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 435 TGAGCTCATGACCATAAGAGCCTTCCACAGCAAGATGTTGCGGTGTTATAGTCTTGGAAC 494
Query 360 AGCTATAGGGTTCAGGATCCGGAGAGGGGTTCTTACTGATATCCCGGCGATTATTGTGTT 419
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 AGCTATAGGGTTCAGGATTCGGAGAGGGGTTCTTACTGATATCCCAGCGATTATTGTGTT 554
Query 420 TGTGTCTCGGAAAGTGCATAAGCAATGGCTAAGCCCTCTTCAGTGTCTTCCTACTGCTCT 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 555 TGTGTCTCGGAAAGTGCATAAGCAATGGCTAAGTCCTCTTCAGTGTCTTCCTACTGCTCT 614
Query 480 TGAGGGAGCAGGAGGGATTTGGTGTGATGTGGATGTGGTGGAGTTTTCTTATTTTGGAGA 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 615 TGAGGGAGCAGGAGGGATTTGGTGTGATGTGGATGTGGTGGAGTTTTCGTATTTTGGAGA 674
Query 540 ACCTGATCATCAGCCCACTCCTAAACAAACATTCACTACTGACATTGTTGATCACCTCCA 599
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 675 ACCTGATCATCAGCCCACACCTAAACAAACATTCACTACTGATATTGTTGATCATCTCCA 734
Query 600 AGGTTCTGACCCCTTCATTGGATCAGGCTCTCAGGTGGCAAGCCAAGAGACTTGTGGGAC 659
||| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 AGGGTCAGATCCTTTCATTGGATCAGGCTCTCAGGTGGCAAGCCAAGAGACTTGTGGGAC 794
Query 660 TTTGGGGGCAATAGTGAGGAGTCAGACTGGAAGTAGACAAGTTGGTTTTGTGACTAACCG 719
||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 795 TTTGGGGGCAATAGTTAGGAGTCAGACTGGAGGTAGACAAGTTGGGTTTGTGACTAACCG 854
Query 720 CCATGTTGCTGTCAACTTAGATTACCCGAGCCAGAAGATGTTTCATCCTCTCCCTCCTGC 779
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 855 CCATGTTGCTGTTAACTTAGATTACCCTAGCCAGAAGATGTTTCATCCTCTCCCTCCTGC 914
Query 780 CCTCGGTCCCGGTGTCTATCTTGGAGCAGTTGAGAGAGCCACTTCCTTCATCACAGACGA 839
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CCTTGGTCCTGGTGTCTACCTTGGAGCAGTTGAGAGAGCCACTTCCTTCATCACAGACGA 974
Query 840 TCTCTGGTTTGGCATTTTTGCTGGCACCAATCCAGAGACATTTGTGAGAGCAGATGGTGC 899
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 975 TCTCTGGTTTGGCATTTTTGCTGGCACCAATCCAGAGACGTTTGTGAGAGCAGACGGTGC 1034
Query 900 ATTCATCCCCTTTGCAGACGACTATGACTTGTCACGAGTTACAACGTCTGTCAAAGGTGG 959
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1035 ATTCATCCCCTTTGCAGACGACTATGACCTGTCACGAGTCACAACGTCTGTCAAAGGTGG 1094
Query 960 AGTTGGAGAGATTGGTGAGGTCAAAGCCATAGAGTTGCAGTCTCCAGTTGGCAGTTTAGT 1019
||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1095 AGTAGGAGAGATTGGAGAGGTCAAAGCCATAGAGCTGCAGTCTCCAGTTGGTAGTTTAGT 1154
Query 1020 GGGTAAACAGGTGGTGAAAGTCGGGAGAAGCTCTGGTTTGACTACAGGAACTGTGCTGGC 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1155 GGGTAAACAGGTGGTGAAAGTCGGGAGAAGCTCTGGCTTGACTACAGGAACTGTGCTGGC 1214
Query 1080 TTACGCCCTGGAGTACAATGACGAGAAAGGAGTCTGCTTCCTTACTGATTTTCTTGTTGT 1139
||| || ||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1215 TTATGCACTGGAGTACAATGACGAGAGAGGAGTCTGCTTCCTCACTGATTTTCTTGTTGT 1274
Query 1140 TGGGGAGAACCATCGCAGTCCATTTGATCTTGAGGGAGACAGCGGAAGCCTCATAGTGAT 1199
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CGGGGAGAACCATCGCAGTCCGTTTGATCTTGAGGGAGACAGCGGAAGCCTCATAGTGAT 1334
Query 1200 GAAAGGAGAGGAGAAGGCAAGACCCATTGGGATCATATGGGGAGGCACTGGAAGCCGCGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GAAAGGAGAGGAGAAGGCAAGACCCATTGGGATCATATGGGGAGGCACTGGAAGCCGCGG 1394
Query 1260 GAGGCTGAAACTGAAGGTGGGGGAGTGTCCAGAGAGCTGGACCACTGGTGTAGATCTGGG 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GAGGCTGAAACTGAAGGTAGGGGAGTGTCCAGAGAGCTGGACCACTGGTGTAGATCTGGG 1454
Query 1320 CAGGCTTCTTACACATCTTCAGCTTGATCTCATCACCACCGATGAAGGGTTAAAAGCGGC 1379
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AAGGCTTCTTACACATCTCCAGCTTGATCTCATCACCACCGATGAAGGGTTAAAAGCGGC 1514
Query 1380 AGTGCAAGAACAAAGAGCGGCCTCAACAACGGGGATGAGCTCAATGGTTGCAGACTCATC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 AGTGCAAGAACAAAGAGCGGCCTCAACAACGGGGATGAGCTCAATGGTTGCAGACTCATC 1574
Query 1440 ACCTCCGTATGTGAATCTCAAGAAAGGGAAGAGAAGCCCAGAAGAAAAGGTAGAGGCATC 1499
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1575 ACCTCCGTATGTGAATCTCAAGAAAGAGAAGAGAAGCCCAGAAGAAAAGTTAGAGGCATC 1634
Query 1500 ATTAGGACCTCTTCAGGTCCAACACATTGATCTTGAAGAGAGAATAGAAACAGAAGGAGG 1559
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1635 ATTAGGACCTCTTCAGGTCCAACATATTGATCTTGAAGAGAGAATAGAAACAAAAGGAGG 1694
Query 1560 TGCTCCAAGTGTGGAACACCAGTTCATGCCAACCTTCAGCGGTCAATGTTCCGCAGCTGC 1619
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1695 TGCTCCAAGTGTCGAACACCAGTTCATGCCCACCTTCAGCGGTCAATGTTCCGCTTCTGC 1754
Query 1620 TTGGCCTGAGACTGCTAGAGAGGATCTTGCTGTCGGCCTTACAAATGGTAGCTGCAATGG 1679
||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||
Sbjct 1755 TTGGCCTGAGACTGCTAGAGAGGATCTTGTTGCCGGCTTTACAAATGGTAGCTGCGATGG 1814
Query 1680 GGATTTATGTGTTGGACTGCGTTTAGGGGACGATGGAGCTAAACGCAGACGCACTCAAGT 1739
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1815 GGATTTATGTGTTGGACTACGTTTAGGAGACGATGGAGCTAAACGCAGACGCACTCAGGT 1874
Query 1740 GACCAAGGAAAGAATGAGACCCGCCGAATAGATaaaaa 1777
|||||| |||||||||||||||||||||||||||||||
Sbjct 1875 GACCAACGAAAGAATGAGACCCGCCGAATAGATAAAAA 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5