BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478659

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12960.1 | Symbols:  | unknown protein; Has 44 Blast hits to...   329    6e-90


> AT3G12960.1 | Symbols:  | unknown protein; Has 44 Blast hits 
to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:4136488-4136828 FORWARD 
LENGTH=341
Length=341

 Score =  329 bits (178),  Expect = 6e-90
 Identities = 221/242 (91%), Gaps = 2/242 (1%)
 Strand=Plus/Plus

Query  1    CCTGCCTCACCTTATATACGATGTCTCATGTCCCCTCGTGATGC-CTGAAACCCTAAAAA  59
            |||| ||| |||||||||||| |||| |||||  |||||||| | || ||||||| ||||
Sbjct  1    CCTGTCTCTCCTTATATACGACGTCTAATGTCAACTCGTGAT-CTCTTAAACCCTTAAAA  59

Query  60   TGGCAAAGAACAAGGACGACATAAAGTACGCAACGGCTCAAGCGAAGCTATCGGAAGACG  119
            |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  60   TGGCGAAGAACAAGGACGACATAAAGTATGCAACGGCTCAAGCGAAGCTATCGGAAGACG  119

Query  120  AACCTATCCGTGTAAGTTACAAACACGGGACACCATTAGAAGGAGGCAAGATCGCAGAGT  179
            || | || |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct  120  AAGCAATTCGTGTAAGCTACAAACACGGGACACCATTAGAGGGAGGCAAGATCGCAGAGT  179

Query  180  CGGAGCCTGTAGAGCTGTTCTCGAGCGCTCAACGTATCGAGAAGGGGAAAGATCATTCAG  239
            ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct  180  CGGAGCCTGTAGAGCTGTTCTCGAGTGCTCAACGTATCGAGAAGGGAAAAGAGCAGTCAG  239

Query  240  CA  241
            ||
Sbjct  240  CA  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5