BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478663
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12981.1 | Symbols: | pseudogene of F-box family protein | ... 647 0.0
AT2G29910.1 | Symbols: | F-box/RNI-like superfamily protein | ... 296 1e-79
AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 265 4e-70
AT1G47950.1 | Symbols: | transposable element gene | chr1:1767... 71.3 8e-12
> AT3G12981.1 | Symbols: | pseudogene of F-box family protein
| chr3:4154905-4156051 REVERSE LENGTH=575
Length=575
Score = 647 bits (350), Expect = 0.0
Identities = 465/520 (89%), Gaps = 9/520 (2%)
Strand=Plus/Plus
Query 1 CTTGACTATTCTAGTTATGCCGCTGAAGATTATCAGGTTAATTTGGGTTCCCTTGTAGAA 60
|||||||||||| ||||| |||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 22 CTTGACTATTCTGGTTATCCCGCAGAAGATTATGAGGTTGATTTGGGTTCCCTTGTAGAA 81
Query 61 GATATTGTTGGTGATGTTACTAATCTGGTTGCAGGGATAAGCAATGTTAAAACCCTTCAC 120
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 82 GATATTGTTGGTTATGTTACGAATCTGGTTGCAGGGATAAGCAATGTTAAAACCCTTCAC 141
Query 121 TTATCTTCTGATTCTCTTGAGGTATTTCACTCGTGCTGTAAATCAATGCCGGTGTTTCAC 180
|| || ||| |||||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 142 TTGTCCGCTGTTTCTCTTGAGGTATTTTACTCGTGCTGTAAATCAATCCCGGTGTTTCCC 201
Query 181 AACCTCGTTACTTTATCTTTTGAGAGTGACAAAGAAAGAGGCTGGCAAGCGGTTCCACTT 240
|||||||||||||||||||||||| || ||||||||||||||||| ||| || ||||||
Sbjct 202 AACCTCGTTACTTTATCTTTTGAGTGTAACAAAGAAAGAGGCTGGTAAGTGGAGCCACTT 261
Query 241 CTCCTCAACAACTCTCCAAATCTAGAAACTTTAGTCATCAAGGGTCTTGTGCACGAAGTT 300
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 262 CTCCTTAACTACTCTCCAAATCTAGAAACTTAAGTCATCAAGGGTCTTGTGCATGAAGTT 321
Query 301 ACAGAAAAATGCGGAGATGCATGCGCTTGCATCCCTAAGAAGGATAAGAGGAAGAGCTGA 360
||||| ||| | || || || |||| ||||| |||||||| |||||||||||||||||||
Sbjct 322 ACAGACAAACGTGGTGACGCCTGCGTTTGCACCCCTAAGAGGGATAAGAGGAAGAGCTGA 381
Query 361 AACAGA-TGAGGCATTTCTTGGGGAATTTAAAATGTCTTGAAACTGTCAAGGTTGGTGTT 419
||| || ||||||||||||||| ||||||||| |||||||||||||||| ||| |||
Sbjct 382 AAC-GAATGAGGCATTTCTTGGCAAATTTAAAACGTCTTGAAACTGTCAATGTTAATGTC 440
Query 420 GAAGTCGA-TCAAGGCAAGGATGTTAA-AA--GGTACATGA-GAATCACCAATGCTCTTA 474
||| | || | |||||||||||||||| || ||| | ||| || |||||||||||||||
Sbjct 441 GAATT-GAGTGAAGGCAAGGATGTTAAGAAAAGGTTCCTGACGA-TCACCAATGCTCTTA 498
Query 475 TGAAGCTTCCTAGAGTTTCATCAAACTGTCAGATCCATTT 514
|||||||||| ||||||||||||||||||| |||||||||
Sbjct 499 TGAAGCTTCCCAGAGTTTCATCAAACTGTCTGATCCATTT 538
> AT2G29910.1 | Symbols: | F-box/RNI-like superfamily protein
| chr2:12751147-12753117 REVERSE LENGTH=1662
Length=1662
Score = 296 bits (160), Expect = 1e-79
Identities = 255/299 (85%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 63 TATTGTT-GGTGATGTTACTAATCTGGTTGCAGGGA-TAAGCAATGTTAAAACCCTTCAC 120
|||| || ||||||||||| ||||||||| || ||| ||||||| ||||||||||||||
Sbjct 1011 TATT-TTGGGTGATGTTACCAATCTGGTTACA-GGACTAAGCAACATTAAAACCCTTCAC 1068
Query 121 TTATCTTCTGATTCTCTTGAGGTATTTC-ACTCGTGCTGTAAATCAATGCCGGTGTTTCA 179
|| ||| |||||||||| ||||| ||| ||| || |||||||||||||||||||||||
Sbjct 1069 TTGTCTCCTGATTCTCTCGAGGT-GTTCTACTTTTGTTGTAAATCAATGCCGGTGTTTCA 1127
Query 180 CAACCTCGTTACTTTATCTTTTGAGAGTGACAAAGAAAGAGGCTGGCAAGCGGTT-CCAC 238
||||||| ||||||||||||||||||||| |||| |||||||||||| || | || ||||
Sbjct 1128 CAACCTCCTTACTTTATCTTTTGAGAGTGCCAAA-AAAGAGGCTGGCCAGTG-TTGCCAC 1185
Query 239 TTCTCCTCAACAACTCTCCAAATCTAGAAACTTTAGTCATCAAGGGTCTTGTGCACGAAG 298
||||| |||| || ||||| || ||||| ||||||||||||||||||||||||||| |||
Sbjct 1186 TTCTCATCAATAAGTCTCCTAACCTAGAGACTTTAGTCATCAAGGGTCTTGTGCACCAAG 1245
Query 299 TTACA-GAAAAATGCGGAGATGCATGCGCTTGCATCCCTAAGAAGGAT-AAGAGGAAGA 355
||||| | | | ||||| || || ||| |||| || ||||||| |||| |||| |||||
Sbjct 1246 TTACACGTAGA-TGCGGGGACGCCTGCCCTTGTATACCTAAGA-GGATGAAGAAGAAGA 1302
Score = 169 bits (91), Expect = 3e-41
Identities = 148/173 (86%), Gaps = 13/173 (8%)
Strand=Plus/Plus
Query 353 AGAGCTGAAACAGATGAGGCATTTCTTGGGGAATTTAAAATGTCTTGAAACTGTCAAGGT 412
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 1382 AGAGCTGAAACAGATGAGGCATTTCTTGGGAAATTTGAAATGTCTTGAAACTGTCAATGT 1441
Query 413 TGGTGTTGAAGTCGA-TCA---AG--G-CAAGGATGTT-A-AA-AGGTACATGAGAATCA 462
|||||||||| | || ||| || | ||| |||||| | || | ||| | |||||||
Sbjct 1442 TGGTGTTGAAAT-GAATCACCGAGAAGACAACGATGTTGACAACAAATACCTCAGAATCA 1500
Query 463 CCAATGCTCTTATGAAGCTTCCTAGAGTTTCATCAAACTGTCAGA-TCCATTT 514
| ||||||||||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 1501 CTGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGT-AGAATCCATTT 1552
> AT1G21990.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:7740530-7742106 REVERSE LENGTH=1398
Length=1398
Score = 265 bits (143), Expect = 4e-70
Identities = 222/259 (86%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 89 TTGCAGGGATAAGCAATGTTAAAACCCTTCACTTATCTTCTGATTCTCTTGAGG-TATTT 147
||||| ||||||||||||||| ||||||||||| ||||| ||||||||||||| || ||
Sbjct 893 TTGCAATGATAAGCAATGTTAAGACCCTTCACTTGTCTTCAGATTCTCTTGAGGTTA-TT 951
Query 148 CACTC-GTGCTGTAAA-TCAATGCCGGTGTTTCACAACCTCGTTACTTTATCTTTTGAGA 205
||||| || |||||| | |||||||| |||||| |||||| ||| ||||| |||||||
Sbjct 952 CACTCTCTG-TGTAAAGT-AATGCCGGCGTTTCAAAACCTCCTTAAGTTATCGTTTGAGA 1009
Query 206 GTGACAAAGAAAGAGGCTGGCAAGCGGTTCCACTTCTCCTCAACAACTCTCCAAATCTAG 265
|||||||||||||||||||||||| ||| |||||||| || |||| ||||||||| || |
Sbjct 1010 GTGACAAAGAAAGAGGCTGGCAAGTGGTGCCACTTCTTCTTAACAGCTCTCCAAACCTGG 1069
Query 266 AAACTTTAGTCATCAAGGGTCTTGTGCACGAAGTTAC-AGAAAAATGCGGAGATGCATGC 324
||||||||||||||||||| ||||||||| ||||||| || | | ||||| || || |||
Sbjct 1070 AAACTTTAGTCATCAAGGGACTTGTGCACAAAGTTACTAGTAGA-TGCGGGGACGCCTGC 1128
Query 325 GCTT-GCATCCCTAAGAAG 342
||| |||||| |||||||
Sbjct 1129 -CTTTGCATCCGTAAGAAG 1146
Score = 156 bits (84), Expect = 2e-37
Identities = 144/171 (84%), Gaps = 11/171 (6%)
Strand=Plus/Plus
Query 354 GAGCTGAAACAGATGAGGCATTTCTTGGGGAATTTAAAATGTCTTGAAACTGTCAAGGTT 413
|||| ||| |||||||| |||||||||| ||||| |||||||| || |||||||||| |
Sbjct 1222 GAGCAGAAGCAGATGAGTCATTTCTTGGCAAATTTGAAATGTCTGGAGACTGTCAAGG-T 1280
Query 414 G-GTGTTGAAGTCGATCA---AG--G-CAAGGATG-T--TAAAAGGTACATGAGAATCAC 463
| | |||||||| ||||| || | ||| |||| | ||| | |||| ||||||||||
Sbjct 1281 GCGCGTTGAAGTGGATCACCGAGAAGACAACGATGCTAGTAATACGTACCTGAGAATCAC 1340
Query 464 CAATGCTCTTATGAAGCTTCCTAGAGTTTCATCAAACTGTCAGATCCATTT 514
|||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1341 CAATGCTCTTATGAAGCTTCCTAGGGTTTCATCAAACTGTCGGATCCATTT 1391
> AT1G47950.1 | Symbols: | transposable element gene | chr1:17675488-17681953
REVERSE LENGTH=6466
Length=6466
Score = 71.3 bits (38), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 281 AGGGTCTTGTGCACGA-AGTTACAGAA-AAATGCGGAGATGCATGCGCTTGCATCCCTAA 338
|||||||||||||| | ||| ||| || | | | ||||||||||||||||||||||||||
Sbjct 6153 AGGGTCTTGTGCAC-AGAGTAACA-AATAGACGTGGAGATGCATGCGCTTGCATCCCTAA 6210
Query 339 GAAG 342
||||
Sbjct 6211 GAAG 6214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5