BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478672
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulato... 2586 0.0
AT1G55964.1 | Symbols: | pseudogene of myb family transcriptio... 195 2e-48
> AT3G13040.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr3:4172142-4175227 REVERSE LENGTH=1881
Length=1881
Score = 2586 bits (1400), Expect = 0.0
Identities = 1735/1895 (92%), Gaps = 30/1895 (2%)
Strand=Plus/Plus
Query 1 CGACGGCGATTTCGTAGCCAAAtcttcgtcttcttcctttaaccccatctcttcttcttc 60
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 7 CGACGGCGATTTCGTAGCGAAATCTCCGTCTCCTTCCTTTAACCCCATCTCTTCTTCTTC 66
Query 61 ttcgtcttttgctttctCATTCGGATTAACTTCATCTCTTTGATGGGATTTTGCGTGTTT 120
| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 67 -T--TCTTTTGCTTTCTCATTCGAATTAACTTCATCTCTTTGATGGGATTCAGCTTGTTT 123
Query 121 TCTCAGATGCTAGTTATTTTCTTCATTTGTTATGCAGCAAGTA-TAAAAAGTTGAAGACT 179
||||| ||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 124 TCTCAAATGTTAGTT-TTTTCTTCATTTGTTATGCAGCAAGTATTAAAAAGGTGAAGACT 182
Query 180 TTATCATCCTCTCAGCGGCTTGAAGGCCAACTCCAAACTTATGGCGGATCTTATCAAGAG 239
|||||||||||||||||||||| | || |||| |||||| |||| ||||||| |||||||
Sbjct 183 TTATCATCCTCTCAGCGGCTTGGATGCTAACTGCAAACTAATGGGGGATCTTGTCAAGAG 242
Query 240 TCAGTTTTGTTTGTTGATGTTCATCAAAGCAATCATGAACAGACATAGCCTTGTGTCAAC 299
|||||||| |||||||||| |||||||||||||||||||||||| || ||| | ||| |
Sbjct 243 ACAGTTTTGATTGTTGATGTACATCAAAGCAATCATGAACAGACACAGGCTTCTCTCAGC 302
Query 300 GGCAACAGATGAATGCAACAAAGGAGTTGGTCAAACTTGCTCGACTTCTCCATCTCCAGT 359
|||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||
Sbjct 303 GGCAACAGATGAATGCAATAAAAAACTTGGTCAAGCTTGCTCTTCTTCTTTATCTCCAGT 362
Query 360 CCATAACTTTCTCAATGTCCAGCCAGAACACCGGAAATCTCCCTTCATAAGATCACAATC 419
|||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 363 CCATAACTTTCTGAATGTCCAGCCAGAACACCGGAAAACTCCTTTCATAAGGTCACAATC 422
Query 420 TCCAGATTCAACTGGTCAGCTATGGCCAAAGAATATTTCTCAGAGCACTTTCTCTCGCTC 479
|||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 423 TCCAGATTCACCTGGTCAGCTATGGCCAAAGAATAGTTCTCAGAGCACCTTCTCTCGGTC 482
Query 480 TTCCACCTTCTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAAAAACA 539
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 TTCCACCTTTTGCACAAACCTCTACTTGTCATCATCTTCAACCTCTGAGACTCAGAAACA 542
Query 540 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TCTAGGAAACAGTCTTCCTTTCCTCCCTGATCCCTCCTCTTACACCCACTCAGCTTCTGG 602
Query 600 TGTGGAGTCTGCAAGATCTCCATCTATTTTCAGTGAAGATTTGGGCAATCAATGTGATGG 659
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 603 TGTGGAGTCTGCAAGATCTCCATCTATTTTCACTGAGGATTTGGGCAATCAATGTGATGG 662
Query 660 AGACAACTCCGGCTCGCTTCTCAAAGATTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 719
|| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 663 AGGCAACTCCGGGTCGCTTCTCAAAGACTTCCTTAATCTTTCTGGAGATGCTTGTTCCGA 722
Query 720 TGGCGGTTTTCATGATTTTGGCTGTTCGAATGACAGCTTTTGCTTATCAGATCAAATGGA 779
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 723 TGGCGATTTTCATGATTTTGGCTGTTCGAATGACAGCTATTGCTTATCAGATCAAATGGA 782
Query 780 GTTGCAGTTCCTCTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACCCCCAG 839
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 783 ATTACAGTTCCTGTCTGATGAACTTGAGCTGGCTATCACAGACCGCGCTGAAACTCCCAG 842
Query 840 GCTTGATGAGATCTATGAAACGCCATTGGCTTCGTCAAATCCAGTGACGAGATTGAGTCC 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 843 GCTTGATGAGATCTATGAAACGCCATTGG---CGTCAAATCCAGTGACGAGATTGAGTCC 899
Query 900 AAGCCAAACCTGTGTTGCTGGAGCAATGTCTATAGACGTAGTTTCATCGCACCCTTCTCC 959
|||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 900 AAGCCAAAGCTGTGTTCCTGGAGCAATGTCTGTAGACGTAGTTTCATCTCACCCTTCTCC 959
Query 960 GGGATCAGCAGCCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 GGGATCAGCAGCCAATCAAAAGTCGAGAATGAGATGGACTCCTGAGCTCCACGAGTCTTT 1019
Query 1020 TGTTAAGTCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTATGAA 1079
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 TGTAAAGGCGGTGATCAAACTTGAAGGGCCTGAAAAGGCCACTCCAAAGGCTGTTAAGAA 1079
Query 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGCCACTTGCAGAAGTATAG 1139
Query 1140 ACTAGCCAAGTATATGCCagagaaaaaagaagagaaaaagaatgaaaactcagaagaaaa 1199
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1140 ACTAGCCAAGTATATGCCAGAGAAAAAAGAAGAGAAAAGGACTGATAACTCAGAAGAAAA 1199
Query 1200 gaaaCTGGCTTTGAGTAACAGTGATGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAACTGGCTTTGAGTAAGAGTGAAGCTGACGAGAAGAAGAAAGGGGCCATACAATTAAC 1259
Query 1260 TGAAGCTCTGCGTATGCAGATGGAAGTTCAGAAGCAACTGCATGAACAGCTCGAGGTGCA 1319
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1260 TGAAGCACTGCGTATGCAGATGGAAGTTCAGAAGCAATTGCATGAACAGCTGGAGGTGCA 1319
Query 1320 ACGGGTACTTCAGCTACGAATTGAAGAGCACGCTAAATACTTGGAAAAGATGTTGGAAGA 1379
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 ACGGGTGCTTCAGCTACGAATTGAAGAGCATGCTAAATACTTGGAAAAGATGTTGGAAGA 1379
Query 1380 ACAACGCAAAACCGGAAAGTTGATTTGTTCTTCTTCTTCTCAGACAGTATTATCACCTAG 1439
|||||||||||| |||| || ||||| |||||||||| |||||||| |||||||||||
Sbjct 1380 ACAACGCAAAACAGGAAGGTGGATTT---CTTCTTCTTCGCAGACAGTGTTATCACCTAG 1436
Query 1440 TGATGACTCTATATCAGATTCTCAAAACATGTCCAAAACCGAAGCATCTTCGCCTCAGCG 1499
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 TGATGACTCTATACCAGATTCTCAAAACATGTCCAAAACCAAAGCATCTTCGCCTCAGCC 1496
Query 1500 GTCAACATCTGCAAAGAACAAAGCTTCTGAAACTGAAGACGATAAATGTGAAAGCCCTCA 1559
| || | ||||| |||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1497 GCCATTACCTGCAGAGAACAAAGCGTCGGAAACCGAAGACGATAAATGTGAAAGCCCTCA 1556
Query 1560 AAAACGTCGCAGGCTTGAGAACAAAGCTGAATCTGAAGATCCTAAGAGGTAGGAAGATGC 1619
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 1557 GAAACGTCGCAGGCTTGAGAACATAGCTGAATCTGAAGATCCTAAGAGGTAGTAAGATTC 1616
Query 1620 TTCAAGTATGTAAATATGGTATGTTTTGTGTGATATGGTGAGAGAGATGGTGGTGATCAT 1679
|||||||||||||||||||| ||||||||| || | |||||||||| | | || |||
Sbjct 1617 TTCAAGTATGTAAATATGGTCCGTTTTGTGTAATTTAGTGAGAGAGA-GA-G-TG-TCAC 1672
Query 1680 TCAAAGTATATGTTTGTAATGTAGATCTTTGTCGGAAACGTGTAAACGTATTACGAATCT 1739
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| || |
Sbjct 1673 TCAAAATATATGTTTGTAATGTAGATCTTTGTCAGAAACGTGTAAACTTATTACGGATAT 1732
Query 1740 TGAGGATGTTC-CTTTCATAAACATATGATGCATAGAACCCGAAATCCC-TGATTT-TGT 1796
||||||||| | || | | | | | ||| | | |||| | ||| | || ||| |||
Sbjct 1733 TGAGGATGT-CACTGCCTTCA-C-TGTGA-GAAAAGAATCTTTAATTCTGTG-TTTGTGT 1787
Query 1797 GAGTAGA--TCACTTGTTAGTGTGAAAAGTGAAG-GATTCACTTTCCAATCTTCATAGG- 1852
| ||| | ||||| ||||||| ||||| ||||| | ||||||||||||| || |||
Sbjct 1788 GTGTATAGGTCACTGGTTAGTGAGAAAACTGAAGAG-TTCACTTTCCAATGTTTATATAC 1846
Query 1853 --GTTTGCTAATATCAAAAGTGGATGTCACTTTCC 1885
|||||||||||||||| ||||| ||||||||||
Sbjct 1847 AAGTTTGCTAATATCAAACGTGGAAGTCACTTTCC 1881
> AT1G55964.1 | Symbols: | pseudogene of myb family transcription
factor | chr1:20931032-20931975 FORWARD LENGTH=535
Length=535
Score = 195 bits (105), Expect = 2e-48
Identities = 196/238 (82%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 952 CCTTCTCCGGGATCAGCAG-CCAATCACAAGACGAGAATGAGATGGACTCCTGAGCTCCA 1010
||||||| |||||||| | || |||||| | ||||| |||| || ||||||||||||
Sbjct 157 CCTTCTCTAGGATCAGC-GATTAACCACAAGCCAAGAATAAGATAGAGTCCTGAGCTCCA 215
Query 1011 CGAGTC-TTTTGTTA-AGTCGGTGATCAAACTTGAAGGGCCT----GA--AAAGGCCACT 1062
||| | |||| || || | |||| ||| ||| |||||||| || |||| | |||
Sbjct 216 TGAG-CATTTT-CTAGAGGCAGTGAACAAGCTTCAAGGGCCTAAAAGACTAAAGACAACT 273
Query 1063 CCAAAGGCTGTTATGAAGCTCATGAATGTTGAGGGCTTGACGATCTATCATGTAAAAAGC 1122
|| ||||||| ||||||||| |||||||||||| | ||||| |||||||| || ||||||
Sbjct 274 CCTAAGGCTGCTATGAAGCTAATGAATGTTGAGAGTTTGACCATCTATCAAGTGAAAAGC 333
Query 1123 CACTTGCAGAAGTATAGACTAGCCAAGTATATGCCagagaaaaaagaagagaa-aaag 1179
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 334 CACTTGCAGAAGTATAGACTAGCCAAGTATATGCCAGAGAGAAAACAAGAGAAGAAAG 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5