BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478675
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13060.2 | Symbols: ECT5 | evolutionarily conserved C-termin... 3886 0.0
AT3G13061.1 | Symbols: | other RNA | chr3:4183099-4183884 REVE... 566 4e-160
> AT3G13060.2 | Symbols: ECT5 | evolutionarily conserved C-terminal
region 5 | chr3:4180573-4183975 FORWARD LENGTH=2300
Length=2300
Score = 3886 bits (2104), Expect = 0.0
Identities = 2239/2303 (97%), Gaps = 14/2303 (1%)
Strand=Plus/Plus
Query 1 TTTGGTTTTGAATCAGATCCTTATTCTTGACCTTTCGATCAGATTCATGGCAACGACTCA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TTTGTTTTTGAATCAGATCCTTATTCTTGACCTTTCGATCAGATTCATGGCAACGACTCA 66
Query 61 ATCACACACCTCAGATCTTACTTCAGAGGAGCAACCTGCTAGTTTGGACATCATGAAGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ATCACACACCTCAGATCTTACTTCAGAGGAGCAACCTGCTAGTTTGGACATCATGAAGGA 126
Query 121 GCAGACTGTTCCGGCAAACAACGAGACATCAGCCTCTTTTAAGTCCTCCCAGGAAGCTGC 180
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 127 GCAGACTGTCCCGGCAAACAACGAGACATCAGCCTCTTTTAAGTCCTCCCAGGAAGCTCC 186
Query 181 AGTTGTAGTTCATCCAGCAAAAGTTGCTCCACTAACTGGACCCTATGGTTTAGCTGGTGA 240
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 187 AGTTGTAGTTCATCCAGCAAAAGTTGCTCCACTTACTGGACCTTATGGTTTAGCCGGTGA 246
Query 241 TTTTGCCGGACACTTACCTAGCAGCATCCTCTCTCCTCAAGCGCAAGGCTTTTACTATAG 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 247 TTTTGCCGGACACTTACCTAGCAGCATCCTCTCTCCTCAAGCACAAGGCTTTTACTATAG 306
Query 301 AGGTTATGAAAACCCCACAGGCGAATGGGACGAATATTCCTCATATGTCAATGTTGAAGG 360
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 307 AGGTTATGAAAACCCCACAGGCGAATGGGACGAGTATTCCTCGTATGTCAATGTTGAAGG 366
Query 361 ATTGGACATCACATCTCCTGTTGGCTTCAATGAGAATGCTTCTCTGGTCTACCAAACGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATTGGACATCACATCTCCTGTTGGCTTCAATGAGAATGCTTCTCTGGTCTACCAAACGGG 426
Query 421 ATATGGATACAACCCTCAAATGCCATATGGGCCATATTCCCCTGCAGCAAGTCCCTTGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATATGGATACAACCCTCAAATGCCATATGGGCCATATTCCCCTGCAGCAAGTCCCTTGCC 486
Query 481 TTCTGAGGGGCAGTTGTATTCACCTCAGCAGTTTCCGTTTTCGGGGGCATCACCGTATTA 540
||||||||| ||||||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 487 TTCTGAGGGACAGTTGTATTCTCCACAACAGTTTCCGTTTTCAGGGGCATCACCGTATTA 546
Query 541 CCAGCAGGTAGTTCCTCCTAGCATGCAATATATTACTTCTCCAACTCAGCCCGAGCTCAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CCAGCAGGTAGTTCCTCCTAGCATGCAATATATTACTTCTCCAACTCAGCCCGAGCTCAC 606
Query 601 CAGCCTTGTCGGTGTTGACCAACAAGGTGATAACATCGGACCACGCCCGTCCTACCATCC 660
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 607 CAGCCTTGTCGGTGTTGACCAACAAGGTGATAACATCGGACCACGCCAATCCTACCATCC 666
Query 661 TCATCCCATTGGACCGTTTAATGGAAACCAGCCAAACCTTGGTTTTCCTGAATGGCAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCATCCCATTGGACCGTTTAATGGAAACCAGCCAAACCTTGGTTTTCCTGAATGGCAGCA 726
Query 721 AGGTTTTGACGGGGGAATATGGTCAGATTGGTCCAAGCCTTCTGATATGCACAGACATTC 780
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 727 AGGTTTTGACGGGGGAATATGGTCGGATTGGTCCAAGCCTTCTGATATGCACAGGCATTC 786
Query 781 TTCTTCTATTTCTCCGGCTTTATCTCCTCAGCCACTCGGCTCATTTGGATCATATGGCCA 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 787 TTCTTCTATTTCTCCGGCTTTATCTCCTCAGCCACTCGGCTCATATGGATCATATGGCCA 846
Query 841 GAACATTCCCATGGGGTCACAGCGACAGAGATCGTTTTACGGTTTTGGATCTGGTTCGAA 900
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 847 GAACATACCCATGGGGTCACAGCGACAGAGATCATTTTACGGTTTTGGATCTGGTTCGAA 906
Query 901 CTCTTATAACAGAGGTTATATGCATAGTGGTGGTCGTGGCCAGGGTTCTAACTATGGAAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CTCTTATAACAGAGGTTATATGCATAGTGGTGGTCGTGGCCAGGGTTCTAACTATGGAAG 966
Query 961 TAGACTAATTTCTAATGTGGGTATGGGAAACCACGGCTGGATTGGGGTTGACAACAGTCG 1020
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 967 TAGACTAATTTCTAATGTGGGTATGGGAAACCAAGGCTGGATTGGGGTTGACAACAGTCG 1026
Query 1021 AGGGCGTGGAAGGGTTAGTGATCCATCTTTGGGTGGTGGTTATAATGGTACATTTGATAT 1080
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1027 AGGGCGTGGAAGGGTTAGTGATCCATCTTTGGGTGGTGCTTATAATGGTACTTTTGATAT 1086
Query 1081 CCTCAATGAGCAAAATCGAGGACCAAGGGCTTCAAAGCCTAAGACTCAGGTCTCAGAGGA 1140
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1087 CCTCAATGAGCAAAATCGAGGACCAAGGGCTTCAAAGCCCAAGACTCAGGTCTTAGAGGA 1146
Query 1141 GCTTGATTCTGCTGCTGATTCTAAGAAAAATAACAAAGGCAGTGCAAAGGAACACGAGGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1147 GCTTGATTCTGCTGCTGATTCTAAGAAAAATAACAAAGGCAGTGCAAAGGAGCACGAGGA 1206
Query 1201 ATCCAACAACGCGGACTTTGTCACCGACTACAATAACGCCAAGTTGTTCATCATCAAGTC 1260
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1207 ATCCAACAACGCAGACTTTGTCACCGACTACACTAACGCCAAGTTGTTCATCATCAAGTC 1266
Query 1261 TTACAGTGAAGACAATGTTCACAAAAGCATCAAATACAATGTATGGGCTAGCACCCCTAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTACAGTGAAGACAATGTTCACAAAAGCATCAAATACAATGTATGGGCTAGCACCCCTAA 1326
Query 1321 TGGCAACAAAAAGCTTGACGCTGCTTATCGTGAGGCCAAGGATGAGAAAGAACCGTGTCC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGGCAACAAAAAGCTTGACGCTGCTTATCGTGAGGCCAAGGATGAGAAAGAACCGTGTCC 1386
Query 1381 ACTGTTTCTTCTGTTCTCGGTAAATGCGAGTTCCCAATTCTGTGGTGTAGCGGAGATGGT 1440
||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1387 ACTTTTTCTTCTGTTCTCGGTAAATGCGAGCTCTCAATTCTGTGGTGTAGCAGAGATGGT 1446
Query 1441 TGGACCTGTTGATTTTGAGAAGAGCGTTGATTACTGGCAACAGGACAAATGGAGTGGACA 1500
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1447 TGGACCTGTTGATTTTGAGAAGAGCGTTGATTACTGGCAACAAGATAAATGGAGTGGACA 1506
Query 1501 GTTCCCAGTGAAGTGGCACATTATCAAAGATGTTCCAAACAGTCAGTTCCGCCACATTAT 1560
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1507 GTTCCCAGTGAAGTGGCACATTATCAAAGATGTTCCAAACAGCCAGTTCCGCCACATTAT 1566
Query 1561 ATTGGAAAACAATGACAATAAGCCTGTGACTAATAGTCGAGATACCCAAGAAGTAAAACT 1620
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1567 ATTGGAAAACAATGACAATAAGCCTGTGACTAATAGTCGAGACACCCAAGAAGTAAAACT 1626
Query 1621 GGAACAGGGCATCGAGATGCTGAAGATCTTCAAGAACTATGATGCTGACACGTCAATCTT 1680
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1627 GGAACAGGGCATCGAGATGCTGAAGATCTTCAAGAACTACGACGCTGACACGTCAATCTT 1686
Query 1681 GGATGATTTCGGGTTTTATGAAGAGCGGGAGAAAATTATACAGGACCGGAAGGCAAGAAG 1740
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1687 GGATGATTTCGGGTTTTATGAAGAGCGGGAGAAAATTATACAAGACCGGAAGGCAAGAAG 1746
Query 1741 ACAGCCAAGCTTGCCATCTGCAGGAGTAGTAGCAGGAGAAAATGAACATAAACCTGCTTC 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 ACAGCCAAGCTTGCCATCTGCAGGAGTAGTAGCAGGAGAAAATGAACATAAACCTGCTTC 1806
Query 1801 TGCTGCATTGCCCACGGACTTCATGAAGAACATGTCCAAGAGTTTTGCGCAAGTTGTCCG 1860
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 TGCTGCATTACCCACAGACTTCATGAAGAACATGTCCAAGAGTTTTGCGCAAGTTGTCCG 1866
Query 1861 CTTGGACGAAGGCAGCAAAGAAGCAGGCAAGGCCAGTTCACCTCCAGATGCAATTACAAC 1920
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1867 CTTGGACGAAGGCAGCAAAGAAGCAGTCAAGGCCAGTTCATCTCCAGATGCAATTACAAC 1926
Query 1921 AACAGCAGCAGTCTCTTCTGGTCAATCCAACTAGTAAGTAAAAGACATCAATTAGCAAAG 1980
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 A---GCAGCAGTCTCTTCTGGTCAATCCAACTAGTAAGTAAAAGACATCAATTAGCAAAG 1983
Query 1981 ACTATGTTTTCAAATTCCATAATATGATCTTTTGTTTGTTCTAAGAAGGTATT-CAAATG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1984 ACTATGTTTTCAAATTCCATAATATGATCTTTTGTTTGTTCTAAGAAGGTATTTCAAATG 2043
Query 2040 AAATTTTACGTCTGACCGGGTCTGGTTTTTGTGTAAAGTAAGCCTCTTTT-T--GCCCTT 2096
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2044 AAATTTTACGTCTGACCGGGTCTGGTTTTTGTGTAAAGTAAGCCTCTTTCCTCCGCCCTT 2103
Query 2097 TTCTGCTTCAGGGGTATTTAGCCAAA-TTTGATTCATTTTCCTCTTTTCAATGTTCTATA 2155
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2104 TTCTGCTTCAGGGGTATTTAGCCAAAATTTGATTCATTTCCCTCTTTTCAATGTTCTATA 2163
Query 2156 ATACCCTCACTCTTCTGGGTTGATAGAAAAAGAAGATGAAGAAGATAATGTATGAAATAC 2215
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2164 ATACCCTCACTCTTCTGAGTTGATAGAAGAAGAAGATGAAGAAGATAATGTATGAAAGAC 2223
Query 2216 AATATAATGTTGCTCTTGTAAAGTTGGCCTCATTTATCTTTGCAGGCAGTTTTTCTTTTC 2275
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 AATATAATGTTTCTCTTGTAAAGTTGGCCTCATTTATCTTTGCAGGCAGTTTTTC----- 2278
Query 2276 TAAAATAAAAATGCAGATTACAC 2298
||||||||||||||||||||||
Sbjct 2279 -AAAATAAAAATGCAGATTACAC 2300
> AT3G13061.1 | Symbols: | other RNA | chr3:4183099-4183884 REVERSE
LENGTH=687
Length=687
Score = 566 bits (306), Expect = 4e-160
Identities = 328/338 (97%), Gaps = 3/338 (1%)
Strand=Plus/Minus
Query 1613 GTAAAACTGGAACAGGGCATCGAGATGCTGAAGATCTTCAAGAACTATGATGCTGACACG 1672
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 492 GTAAAACTGGAACAGGGCATCGAGATGCTGAAGATCTTCAAGAACTACGACGCTGACACG 433
Query 1673 TCAATCTTGGATGATTTCGGGTTTTATGAAGAGCGGGAGAAAATTATACAGGACCGGAAG 1732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 432 TCAATCTTGGATGATTTCGGGTTTTATGAAGAGCGGGAGAAAATTATACAAGACCGGAAG 373
Query 1733 GCAAGAAGACAGCCAAGCTTGCCATCTGCAGGAGTAGTAGCAGGAGAAAATGAACATAAA 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GCAAGAAGACAGCCAAGCTTGCCATCTGCAGGAGTAGTAGCAGGAGAAAATGAACATAAA 313
Query 1793 CCTGCTTCTGCTGCATTGCCCACGGACTTCATGAAGAACATGTCCAAGAGTTTTGCGCAA 1852
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 CCTGCTTCTGCTGCATTACCCACAGACTTCATGAAGAACATGTCCAAGAGTTTTGCGCAA 253
Query 1853 GTTGTCCGCTTGGACGAAGGCAGCAAAGAAGCAGGCAAGGCCAGTTCACCTCCAGATGCA 1912
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 252 GTTGTCCGCTTGGACGAAGGCAGCAAAGAAGCAGTCAAGGCCAGTTCATCTCCAGATGCA 193
Query 1913 ATTACAACAACAGCAGCAGTCTCTTCTGGTCAATCCAA 1950
||||||||| ||||||||||||||||||||||||||
Sbjct 192 ATTACAACA---GCAGCAGTCTCTTCTGGTCAATCCAA 158
Score = 243 bits (131), Expect = 8e-63
Identities = 149/157 (95%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 2049 GTCTGACCGGGTCTGGTTTTTGTGTAAAGTAAGCCTCTTTT-T--GCCCTTTTCTGCTTC 2105
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 157 GTCTGACCGGGTCTGGTTTTTGTGTAAAGTAAGCCTCTTTCCTCCGCCCTTTTCTGCTTC 98
Query 2106 AGGGGTATTTAGCCAAA-TTTGATTCATTTTCCTCTTTTCAATGTTCTATAATACCCTCA 2164
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 97 AGGGGTATTTAGCCAAAATTTGATTCATTTCCCTCTTTTCAATGTTCTATAATACCCTCA 38
Query 2165 CTCTTCTGGGTTGATAGAAAAAGAAGATGAAGAAGAT 2201
|||||||| |||||||||| |||||||||||||||||
Sbjct 37 CTCTTCTGAGTTGATAGAAGAAGAAGATGAAGAAGAT 1
Score = 198 bits (107), Expect = 2e-49
Identities = 111/113 (98%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 1504 CCCAGTGAAGTGGCACATTATCAAAGATGTTCCAAACAGTCAGTTCCGCCACATTATATT 1563
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 687 CCCAGTGAAGTGGCACATTATCAAAGATGTTCCAAACAGCCAGTTCCGCCACATTATATT 628
Query 1564 GGAAAACAATGACAATAAGCCTGTGACTAATAGTCGAGATACCCAAGAAGTAA 1616
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 627 GGAAAACAATGACAATAAGCCTGTGACTAATAGTCGAGACACCCAAGAAGTAA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5