BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478688
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13120.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 1387 0.0
> AT3G13120.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:4219775-4221630 REVERSE LENGTH=1027
Length=1027
Score = 1387 bits (751), Expect = 0.0
Identities = 887/950 (93%), Gaps = 19/950 (2%)
Strand=Plus/Plus
Query 1 ATGGATAACCCTCGAGACGAAACAGCTGAAGAAGAAACCTCATCCTTCGAACGTTaagag 60
||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||| | |
Sbjct 1 ATGGATAACCCTCAAGAAGAAGCTGCTGAAGAAGAAACCTCATCCTTCGAACGTT-A-A- 57
Query 61 gaagaagaagaagaagaagagaaATCGATTC-TTG-TTCAGGAAAATTCCATGGCGGTGT 118
| || ||||||||| ||||||||||||||| | | || ||||||||| |||||||| |
Sbjct 58 G-AG--GAAGAAGAATAAGAGAAATCGATTCGTGGTTTTGGGAAAATTCAATGGCGGTTT 114
Query 119 CTACTGTATCTTCGTTTCTATTACCCTCCTTCGTCATTCCAAGCTCTTCGCCTTCTTCTA 178
|||||||||| ||||||||||| || || |||| ||||||||||||||||||||||||||
Sbjct 115 CTACTGTATCGTCGTTTCTATTGCCATCTTTCGGCATTCCAAGCTCTTCGCCTTCTTCTA 174
Query 179 CCAGACTCAAAGTCTCTCTGCTACCTTCATCGTCTACCCATGGCGGCCTTAGTTCCTGCG 238
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 175 CCAGACTCAAAGTCTCTCTGCTGCCTTCATCTTCTACCCATGGCGGCCTTAGTTCCTGCG 234
Query 239 TCCTTACTAAACCCTCCGTTTCTCTTACGAAGGTCTTCGCGGTTCCCGAAACCCTAGATC 298
||||||| ||||| ||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 235 TCCTTACGAAACCATCCGTCTCGCTTACGAAGGTCTTCGCTGTTCCCGATACCCTAGATC 294
Query 299 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCCTCCATCAGTG 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 CAACTCCAGAAATTCTCGATGAACCCGCCTCTGAGGTTCCGAGCTCTTCATCCATCAGTG 354
Query 359 TAGATGCTGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 418
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TAGACGCGGATAAGATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGG 414
Query 419 TGCCTCTTATTGAGGACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAA 478
||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 415 TGCCTCTTATTGAGGACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAA 474
Query 479 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 AGACGATGGGTCCTGTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTC 534
Query 539 CTCACGTACACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTG 598
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 535 CTCACGTTCACAAGGATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTG 594
Query 599 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATATTCTCTACCCGACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTG 654
Query 659 GTGTAGATGTGGAAGTGAAGCTCTGAAGAACGA-GCGTAACTACAATGATGTGATGGGCA 717
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 655 GTGTCGATGTGGAAGTGAAGCTCTGAAGAA-GAAGCGTAACTACAATGATGTGATGGGCA 713
Query 718 CTTTTGCATTAAATGAACAGACTGTTTCAGATCAACTACATTTCTTAGAACCGGTAAGCC 777
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 714 CTTTTGCATTGAATGAACAGACTGTTTCAGATCAACTACATTGCTTAGAACTGGTAAGCC 773
Query 778 TTGTATCATCTTTTT-GAGAACCTCTGTAATGAAAATGTAAGTTGTATGATCTGGTCCTT 836
||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 774 TTGTATCATCTTTTTTGAGAACCTTTGTAACGAAAATGTAAGTTGTATTATCTGGTCCTT 833
Query 837 AGCAAAGTTGGAATCTTTAGCGATGTTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 896
| || | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 GG-AATCT---A-TCTTTAGCGATGCTTGGTTCTTAGTTGATGAACATATCCTTAATTAA 888
Query 897 GCAAGTTCAAAGGAAttttttgtttttgttttACTAATTGTTATGCAGTT 946
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 889 GCAAGTTCAAAGGAATTT---GTTTTTGTTTTACTAATTGTTATGCAGTT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5