BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478689
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1029 0.0
> AT3G13130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte;
Has 140 Blast hits to 132 proteins in 41 species:
Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants -
51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
| chr3:4222914-4223752 FORWARD LENGTH=839
Length=839
Score = 1029 bits (557), Expect = 0.0
Identities = 692/753 (92%), Gaps = 26/753 (3%)
Strand=Plus/Plus
Query 1 AATTACACTTAAACCTGTTT-A-T--TTCTCCTTCTTCTTCTTATTCTAGTCTTCATCAT 56
|||||||||| ||||||||| | | |||| ||||||||||||||||||||| ||| |||
Sbjct 1 AATTACACTTTAACCTGTTTAATTCCTTCTTCTTCTTCTTCTTATTCTAGTCCTCACCAT 60
Query 57 TCACTCACaaaaacaaagaaaagaaaccagagagatggatcaaataaaaccggagtttct 116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTCACAAAACCAAAGAAAAGAAACCAGAGAGATGGATCAAATAAAACCGGAGTTTCT 120
Query 117 gaaaaaaTTGACGAAGTTTATAGCAGTTTCGATATGGATTTTCTCTCTTTTAACCA-CTC 175
||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| | |
Sbjct 121 GAAGAAATTGACCAAGTTTATAGCAGTTTCGATGTGGATTTTATCTCTTTTAACCAGC-C 179
Query 176 ACAACTTCTATTTATATAGATTCATGATTCAACTCGTAACACACGCAGTAGATAAAAACT 235
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 180 ACGACTTCTATTTATATAGGTTCATGATCCAACTCGTAACACACGCAGTAGATAAAAACT 239
Query 236 ACATGTTCCTCCTCTGCAATGGTCTCTTAGTGGTTGTTGCGAAGTGCTCTGGTTTGGTCG 295
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 240 ACATGTTCCTCCTCTGCAATGGTCTCGTAGTGGTTGTTGCTAAGTGTTCTGGTTTGGTCG 299
Query 296 CTTCGTCGAAACCAATAGAGAAATTTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 355
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCGTCCAAACCAATAGAGAAAATTTGGAGTAATACCGATAAAACCTTTGATTATGGAG 359
Query 356 ATTTCGAGAGTTACAATGCGATATTGGAGGTGA-AGTATAATTCTGTTAATGGAATAGGA 414
||||||||||||||| | ||||| ||||| | | ||||||| |||| | |||||||||||
Sbjct 360 ATTTCGAGAGTTACACTACGATACTGGAGCT-AGAGTATAAATCTGATCATGGAATAGGA 418
Query 415 ACAGAGTACTCCTTTCTTCTTGCAGAGGAAGTTACTGTAGAGGAGGATACAAAACATCAA 474
|||||| ||| | ||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 419 ACAGAG---TCC--T-TTCTTGCAGAGGAAGTTACAGTGGAGGAAGATACAAAACATCAA 472
Query 475 GAAACCGAAGA-AA--ACGAAGAAGATGACGATGACAACACATTAGCAGATAATGAAGGA 531
|||||||| || || | |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 473 GAAACCGAGGACAACGAAGAAGAAGATGACGACGACAACACATTAGCAGATAATGATGGA 532
Query 532 GAGGAAGAGTGTGATCTTCGTGACGGATCTATAAACGAGGAAGAAGAAGAAGAGAACGTA 591
||||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 533 GAGGAAGAGTGTGGTCTTCGTGGCGGATCTATAAACGAGGAAGAAGAAG--G-GAACGTA 589
Query 592 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAGTTCGACGAGTTCATCAGAAAG 651
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 GGAGTGATGACATCGACGGAGGAGGAGATGAATAAGAAATTCGACGAGTTCATCAGAAAG 649
Query 652 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATACTTGTTTGAGTACTACTT 711
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 650 ATGAAGGAAGAGCTTAGAATCGAAGCTAAACGGCATTTAATCCTTGTTTGAGTACT--TT 707
Query 712 -TATAGTTAATCAGTTTTGTTTTAAGTTTAATC 743
|| | |||||||||||||||| ||||||||||
Sbjct 708 CTA-A-TTAATCAGTTTTGTTT-AAGTTTAATC 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5