BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478692
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2047 0.0
> AT3G13160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4229971-4231286 REVERSE LENGTH=1316
Length=1316
Score = 2047 bits (1108), Expect = 0.0
Identities = 1209/1258 (96%), Gaps = 6/1258 (0%)
Strand=Plus/Plus
Query 35 CCGATCC-AAAACAAG-AGaaaaaaaCCTTTGCACACAGCTAAAAACGATGTCGTCTCTC 92
||||||| |||| ||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CCGATCCAAAAAAAAGAAGAGAAAAACCTTTGCATACAGCTAAAAACGATGTCGTCTCTC 120
Query 93 TCTCGCTTTCTCCTTCGTGGCAACTTCAGCTTCAGTACCCCCACGAATCGCCGCTTCTTC 152
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 121 TCTCGCTTTCTCCTTCGTGGCAACTTCAGCTTCAGCACCCACACGAATCGCCGCTTCTTC 180
Query 153 TCCGCCGTTACCGCTGCTGCAGCCACACCCTCGCCA-CCAAGACCATCCCTCATCACCCT 211
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 181 TCCGCCGTTACCGCTGCTGCAGCCACACCCTCGCCACCCAA-ACCGTCCCTCATCACCCT 239
Query 212 CGTAAATGACGAACGCGACCCCAAATTCATCATGGAGAAGTTCAAGAAAGCCTGCCAAGC 271
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 CGTAAATGACGAACGCGACCCCAAATTCATCACGGAGAAGTTCAAGAAAGCCTGCCAAGC 299
Query 272 AGAGTGGTTCCGGAAGAATATAGCCGTCTATGAGAAG-ACCGTTCGCCGTCTCGCTGCAG 330
|||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct 300 AGAGTGGTTCCGGAAGAATATAGCTGTCTATGAG-AGAACCGTTCGCCGTCTCGCCGCAG 358
Query 331 CCAAGAAGTTTGAGTGGGTCGAGGAGATCCTGGAGGAGCAGAATAAGTATCCAAACATGT 390
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 CCAAGAAGTTTGAGTGGGTCGAGGAGATCCTGGAGGAGCAGAACAAGTATCCAAACATGT 418
Query 391 CAAAGGAAGGATTCGTGGCGAGGATTATCAATCTCTATGGACGAGTCGGTATGTTTGAGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAAGGAAGGATTCGTGGCGAGGATTATCAATCTCTATGGACGAGTCGGTATGTTTGAGA 478
Query 451 ATGCACAGAAAGTGTTCGACGAAATGCCTGACAGAAACTGCAAGAGAACAGTGTTGTCTT 510
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 479 ATGCACAGAAAGTGTTCGACGAAATGCCTGAGAGAAACTGCAAGAGAACAGCGTTGTCTT 538
Query 511 TCAACGCATTACTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTTGAAGGTATCT 570
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 539 TCAACGCATTACTGAATGCCTGTGTGAACTCCAAGAAGTTTGATTTGGTTGAAGGTATCT 598
Query 571 TCAAGGAGTTGCCAGGTAAGCTCTCGATTGAACCAGATGTTGCATCTTACAATACTTTGA 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCAAGGAGTTGCCAGGTAAGCTCTCGATTGAACCAGATGTTGCATCTTACAATACTTTGA 658
Query 631 TCAAGGGATTGTGTGGAAAAGGTTCCTTCACTGAAGCTGTTGCATTGATTGATGAGATTG 690
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TCAAGGGATTGTGTGGAAAGGGTTCCTTCACTGAAGCTGTTGCGTTGATTGATGAGATTG 718
Query 691 AGAACAAGGGTTTGAAACCTGATCATATCACCTTCAATATACTTTTACATGAGTCGTATA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGAACAAGGGTTTGAAACCTGATCATATCACCTTCAATATACTTTTACATGAGTCGTATA 778
Query 751 CAAAAGGGAAGTTTGAGGAAGGAGAAAAGATATGGGCTAGAATGGTAGAGAAAAATGTTA 810
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 779 CAAAAGGGAAGTTTGAGGAAGGAGAACAGATATGGGCTAGAATGGTAGAGAAGAATGTTA 838
Query 811 AGCAAGACATCCGTAGTTACAATGCGCGGTTGTTAGGACTAGCCATGGAGACGAAATCAG 870
||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 839 AGCGAGACATCCGTAGTTACAATGCTCGGTTGTTAGGACTAGCCATGGAGAATAAATCAG 898
Query 871 AAGAGATGGTTAGTCTCTTTGACGAACTTAAGGTTAATGGGATCAAACCTGATGTATTCA 930
||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| ||||
Sbjct 899 AAGAGATGGTTAGTCTCTTTGACAAACTTAAGGGTAATGAGCTCAAACCTGATGTTTTCA 958
Query 931 CATTCACTGCTATGATAAAAGGATTTGTCGGTGAAGGAAGATTGGATGAAGCCATAACCT 990
|||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||||| |
Sbjct 959 CATTCACTGCCATGATTAAAGGATTTGTCAGTGAAGGAAAATTAGATGAAGCCATAACGT 1018
Query 991 GGTACAAGGAAATCGAGAAGAATGGTTGTCGCCCGATGAAATTTGTCTTTAACTCATTGC 1050
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 GGTACAAGGAAATCGAGAAGAATGGTTGTCGCCCGTTGAAATTTGTCTTTAACTCATTGC 1078
Query 1051 TTCCTGCAATATGTAAGGCAGGCGATTTGGAGTATGCTTATGAGCTCTGCAAGGAGATAT 1110
||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||
Sbjct 1079 TTCCTGCAATATGTAAGGCGGGCGATTTAGAGTCTGCTTATGAGCTCTGCAAGGAAATAT 1138
Query 1111 TTGTTAAGCGTCTGCTAGTCGATGAGGCTGTCCTGCAGGAGGTAGTTGATGCATTGGTGA 1170
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGCTAAGCGTCTGCTAGTCGATGAGGCTGTCCTGCAGGAGGTAGTTGATGCATTGGTGA 1198
Query 1171 AAGGGTCCAAGCAAGACGAAGCTGAAGAGATTGTCGAGCTCGCAAAGACGAATGACTATT 1230
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 AAGGGTCCAAGCAAGACGAAGCTGAAGAGATTGTCGAGCTAGCAAAGACGAATGACTATT 1258
Query 1231 TGCAGTGCAAGCTTCGTCTCTCTCCCAAAGAGTAGTTCATTGGCAAGGCTTATTAACT 1288
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 1259 TGCAGTGCAAGCTTCGTCTCTTTCCCAAAGAGTAGTTAATTGGCAAGGCTTATTGACT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5