BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478694

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   739    0.0  


> AT3G13175.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant 
structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G16400.1); 
Has 29 Blast hits to 29 proteins in 8 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4235126-4235724 
REVERSE LENGTH=599
Length=599

 Score =  739 bits (400),  Expect = 0.0
 Identities = 488/527 (93%), Gaps = 19/527 (4%)
 Strand=Plus/Plus

Query  1    GAGAGAGAGTTAGCATTG-A--atctctcttttag--atatctctatctctcttcactct  55
            |||||||||||||||||| |  |||||||||||||  |||||||||||||||||||||| 
Sbjct  27   GAGAGAGAGTTAGCATTGTACTATCTCTCTTTTAGATATATCTCTATCTCTCTTCACTCC  86

Query  56   atctttctcGTGTTAACAC-A-AGTCAACAG--TCACAGATCTTTGTCGGTGATCGGAGA  111
            ||||||||||||||||||| | |||| ||||  |||||||||||||||||||||||||||
Sbjct  87   ATCTTTCTCGTGTTAACACAACAGTC-ACAGACTCACAGATCTTTGTCGGTGATCGGAGA  145

Query  112  TGGAGTTCCGGGAGAAGCTTTTGAAGTTTAAGTTCCAAATCGTCATTGCCTTTGTTTTAT  171
            |||||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||
Sbjct  146  TGGAGTTCCGGGAGAAGCTTTTGAAGTTCAAGTTGCAAATCGTGTTTGCCTTTGTTTTAT  205

Query  172  CTCTCCTCACCGTAGCCCTCGTCACTTATTCTCCCGGTTTCCTCACCGTTTTATCTTACT  231
            |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct  206  CTCTCCTCACCGTAGCTCTCGTCGCTTATTCTCCCGGTTTCCTCACCGTTCTATCTTACT  265

Query  232  TCTGGCCACTTTTTCTCTCCACCGCTCTCTTTCTCGCCGCTGTTTTCTTCTTCGCACGCA  291
            |||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct  266  TCTGGCCACTTTTTCTCTCCACGGCTCTCTTTCTCGCTGCCGTTTTCTTCTTCGCACGCA  325

Query  292  CCTCCGACCTTCCGGCTTCATCTACCATCATCCCAGGCGAAGGCGCCGGCTTAAAAGTGG  351
            ||||||| || |||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  326  CCTCCGATCTCCCGGTTTCGTCTACCATCATCCCAGGCGAAGGCGCAGGCTTAAAAGTGG  385

Query  352  CGGCCGAAGGGATTCTTGACTATGTCGTCGGCGGACAACACGAAGACATTCTCTTTGATA  411
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  CGGCGGAAGGGATTCTTGACTATGTCGTCGGCGGACAACACGAAGACATTCTCTTTGATA  445

Query  412  GCTTCACCAAACTTGACTAAGTATGAGATCTCTCT-TCCTT--TT----A-GTATTTCCG  463
            |||||||||||||||||||||||||||| |||||| | |||  ||    | |||||||||
Sbjct  446  GCTTCACCAAACTTGACTAAGTATGAGACCTCTCTGTTCTTAATTCCTTAAGTATTTCCG  505

Query  464  TTAATTAGTTGTTCCTTTTT-AATACTAGAGAAAACAAAATTACAAA  509
            |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  506  TTAATTAGTTGTTCCTTTTTTAATACTAGAGAAAATAAAATTACAAA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24313327148


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5