BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478695
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13180.1 | Symbols: | NOL1/NOP2/sun family protein / antite... 2527 0.0
> AT3G13180.1 | Symbols: | NOL1/NOP2/sun family protein / antitermination
NusB domain-containing protein | chr3:4236017-4240011
REVERSE LENGTH=1926
Length=1926
Score = 2527 bits (1368), Expect = 0.0
Identities = 1519/1593 (95%), Gaps = 6/1593 (0%)
Strand=Plus/Plus
Query 1 GAGTATCCATGGCGCAATTGCTCTCATTTCGCGTGTATCTATCTGCTGAAACGCAGAAAG 60
||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 38 GAGCATCCATGGCGCAATTGCTCTCATTTCGCGTTTATCTGTCTGCTGAAACGCAGAAAG 97
Query 61 CTTCTCCAGGGTCTTTTAAGCGAACCCCAAAGACTCGAAAACCCTTTTCGCAGGATAGAA 120
||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 98 CTTCTCCAGGGTCGTTTAAGCGAACCCAAAAGACTCGAAAACCATTTTCGCCTGATAGAA 157
Query 121 GAGGTCCGGGGGCTCCGTCGTGGAAGCCCCAGAATCTGAATTTGGAGGTTTCTCCACATA 180
||||||||| |||||||||| |||| | ||||||||||||||||| |||||||||||||
Sbjct 158 GAGGTCCGGTGGCTCCGTCGCGGAAATCTCAGAATCTGAATTTGGAAGTTTCTCCACATA 217
Query 181 GAGCTGTATCTGCAGTCAGATTGATGAGAATTGAGTACGGTGGTGCGTTTGCTGATCTTC 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 218 GAGCTGTATCTGCAGTCAGATTGATGAGAATTGAGTACGGTGGTGCTTTTGCTGATCTTT 277
Query 241 TGAATGAGAAAGGGAAAGGGTCTGGGAGCAATGAGATGAGTTATGTTGAGAGGACAATCG 300
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 278 TGAATGAGAAAGGAAAAGGGTCTGGGAGCAATGAGATGAGTTATGTTGAAAGGACTATCG 337
Query 301 GTTTTCGGACTCGCGATTTGGATGACCGGGATCTTAGACTGGTTAGTGTTACTGATGTTG 360
|||||||||||||||||||||||||||| |||||||||| | | ||||| |||||||
Sbjct 338 GTTTTCGGACTCGCGATTTGGATGACCGAGATCTTAGAC----T-G-GTTACAGATGTTG 391
Query 361 TTGGAGGAACAATACGGTGGAGGAGGTATCTTGATCATTTGATTGGTTCCCTTTGCCACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TTGGAGGAACAATACGGTGGAGGAGGTATCTTGATCATTTGATTGGTTCCCTTTGCCACA 451
Query 421 ACGAAAGAACATTTCGTAATATGGAACCTCTTCTATTGCAGATTCTCCGCATTGGTGTAT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACGAAAGAACATTTCGAAATATGGAACCTCTTCTATTGCAGATTCTCCGCATTGGTGTAT 511
Query 481 ATGAGATCATTAAGCGTGATATGCCGCCATATGCTGTTGTTGATGAGAACGTCAGGCTTG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 512 ATGAGATCATTAAGCGTGATATGCCGCCATATGCTGTTGTTGATGAGAACGTAAGGCTTG 571
Query 541 CAAAGGTTGCCCTCAGACCTGGTGCTGGAGATTTTGTCAATGGGATTCTTCGTAAGCTAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 572 CAAAGGTTGCCCTCAGACCTGGTGCTGGAGATTTTGTCAATGGGATTCTTCGTAAACTAG 631
Query 601 TCTCTCTTAAGGAAAAAGACGCCCTTCCATTACCCAGAGTGGAAGGGGATGATCGTGCAC 660
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 632 TCTCTCTTAAGGAAAAAGATGCCCTTCCATTACCCAAAGTGGAAGGGGATGATCGTGCAC 691
Query 661 AAGCACGTGCACTTGCTACTCTTCATTCACATCCTGTTTGGATGGTTAGGCGATGGGTAA 720
| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 692 AGGCACGTGCACTTGCTACTCTTCATTCACATCCCGTTTGGATGGTTAGACGATGGGTAA 751
Query 721 AGTATCTTGGGTTGGATGAAGCCACAAAGCTGATGACATGGAACAACAATGATCCTGGAT 780
||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||
Sbjct 752 AGTATCTTGGGTTGGATGAAGCCACAAAGCTAATGATATGGAATAACAATGATCCTGGAT 811
Query 781 TTAGCTTAAGGGCCAATACGGGAAGGGGCATTGCAAGATCAGACCTTGTGGAGCGTCTAA 840
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 812 TTAGCTTAAGGGCCAATACGGGAAGGGACATTACAAGAGCAGACCTTGTGGAGCGTCTAA 871
Query 841 ACAGTTTAAAGGTTCCACACGAACTGTCCTTACATTTGGAGGAATTTGTCCGCATCAAAA 900
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 872 ACAGTTTAAAGGTTCCACACGAGCTATCCTTACATTTGGAGGAATTTGTCCGCATCAAAA 931
Query 901 CAGGCTTGCAGATCGTTGTGCAAGCTGGTTTACTGAAAGAAGGCATCTGTTCAGTTCAGG 960
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 932 CAGGCTTGCAGACCGTTGTGCAAGCTGGTTTACTCAAAGAAGGCATCTGTTCTGTTCAGG 991
Query 961 ATGAAAGTGCAGGACTAATAGTCTCAGTGGTGAAACCTCAGCCAGGCGAGAGGATAATGG 1020
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 ACGAGAGTGCAGGACTAATAGTCTCAGTGGTGAAACCTCAGCCAGGCGAGAGGATAATGG 1051
Query 1021 ATGCATGTGCTGCTCCTGGAGGAAAGACCCTATTCATGGCATCTTGCTTGAAAGGCCAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 ATGCATGTGCTGCTCCTGGAGGAAAGACCCTATTCATGGCATCTTGCTTGAAAGGCCAAG 1111
Query 1081 GTATGATATATGCTATGGATGTGAATGAAGGACGGCTAAGAATTCTTGGTGAGACTGCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1112 GTATGATATATGCTATGGATGTGAATGAAGGACGGCTAAGAATTCTTGGTGAGACAGCAA 1171
Query 1141 AATCGCACCAAGTTGATGGACTTATCACAACCATTCATTCCGATCTTCGTGTCTTTGCTG 1200
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1172 AATCACACCAAGTTGATGGACTTATCACAACCATTCATTCTGATCTTCGTGTCTTTGCTG 1231
Query 1201 AAACCAGTGAGGTACAATATGACAAAATTTTGCTAGATGCCCCGTGTTCTGGACTCGGCG 1260
|||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1232 AAACCAATGAAGTACAATATGACAAAGTTTTGCTTGATGCCCCGTGTTCTGGACTCGGCG 1291
Query 1261 TCCTCTCCAAGAGAGCAGACTTGCGTTGGAACCGTAAACTTGAGGACATGGTAGAGCTCA 1320
|||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1292 TCCTCTCCAAGAGAGCGGATTTGCGCTGGAACCGTAAACTTGAGGACATGTTAGAGCTCA 1351
Query 1321 CAAAACTGCAGGATGATCTTCTTGATTCTGCCTCCAAACTGGTGAAGCACGGTGGGGTCT 1380
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1352 CTAAACTGCAGGATGAGCTTCTTGATTCTGCCTCCAAACTGGTGAAGCACGGTGGGGTGT 1411
Query 1381 TGATATACAGTACTTGCTCTATAGACCCTGAAGAAAATGAAGGAAGGGTCGAAGCATTTC 1440
|| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1412 TGGTATACAGTACTTGCTCCATAGACCCCGAGGAAAATGAAGGAAGGGTCGAAGCATTTC 1471
Query 1441 TCGAAAGACATCCTGTATTCTCCATAGATCCAGTAACCAGTTTCGTACCGTCAAGTTTTG 1500
|| ||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 1472 TCTTAAGACATCCTGAATTCACCATAGATCCAGTAACCAGTTTTGTACCGTCGAGTTTTG 1531
Query 1501 TAACCTCGCAAGGCTTCTTTTTATCAAACCCAGTGAAACACTCATTAGATGGAGCATTTG 1560
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1532 TAACCTCACAAGGCTTCTTTTTATCAAACCCAGTGAAACACTCACTAGATGGAGCATTTG 1591
Query 1561 CAGCTCGTCTGGTTCGAGCCTTGTGACGTTAAA 1593
|||||||||||||||||||||||||||||||||
Sbjct 1592 CAGCTCGTCTGGTTCGAGCCTTGTGACGTTAAA 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5