BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478696
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13190.1 | Symbols: | Plant protein of unknown function (DU... 1794 0.0
> AT3G13190.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr3:4240172-4241961 FORWARD LENGTH=1395
Length=1395
Score = 1794 bits (971), Expect = 0.0
Identities = 1218/1333 (91%), Gaps = 34/1333 (3%)
Strand=Plus/Plus
Query 1 TCTTCTTCCCCAGTTTTCTTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGCTCGG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 9 TCTTCTTCCCCAGTTTTCCTAATTTGGTAACCCTTGTTGCAGGCGGCTGTTGCTGATCGG 68
Query 61 GTCTCTCGTCTCCATTTTTCCGATTAGTAAGCGTTAACTAGGAAGTCATGTGGTTCAGAA 120
||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 69 GTCTCTCTTCTCCA-TTTTCCGATTAG--A---TTAACTAGGAAGTCATGTGGTTCAGAA 122
Query 121 TAGTCATTTCACGTGCAGCGACAGAGATAAAGTaaaaaaaGAAAAGTATA-AAG-ACCCG 178
||| || |||||||||| ||||||||||||||||||||||||||||||| | | |||||
Sbjct 123 TAGGCAATTCACGTGCAATGACAGAGATAAAGTAAAAAAAGAAAAGTATAGAGGTACCCG 182
Query 179 TGACCTCTCTCTTGCACGGACGTGACACGTGAGCATGATTGTACATTAGAGACGAAGCTT 238
|||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGACCTCTTTCTTACACGAACGTGACACGTGAGCATGATTGTACATTAGAGACGAAG--- 239
Query 239 CGTGCCCTCTTTCCTCCTTCCATAGTTCCACTACAGTGTTCTTAAGTTTGGGAGTGGATG 298
| ||||||||||||||||||| | | |||||||||||||||||| ||||| |||
Sbjct 240 C-TGCCCTCTTTCCTCCTTCC--A--T----TACAGTGTTCTTAAGTTTACGAGTGAATG 290
Query 299 GCTACTTTTCATACCGTTAAAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCTACTTTTCATACCGTTAGAGATGCGGTGAAGCTCTTTGACGCTGGTATTTCTGGAGGA 350
Query 359 AAACA-CATCAAC-AAGAGACAAGGACAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 416
||||| | ||||| ||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 351 AAACATC-TCAACAAAG-GACAAGAAGAGGGAGTGTTGGTGGAGGAGACAAATCTCTGTC 408
Query 417 CCTGGTCTAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGAGAAGACCAAGA 476
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 TCTGGAATAAAGAGGTTAACAAGTTGAAAGAAAAGATAAAGAATGCTGTGAAGACCAAGA 468
Query 477 TTGAGGCTTTGTTAGAGCTTGAGGAAGCTAAGAACACGGTTGAGCATCTCAGTCAGAAGC 536
|||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| ||
Sbjct 469 TTGAGGCTTTGTTAGAACTGGAGGAAGCTAAGAAAACGGTTGAGCAACTCAGTCAGGAGT 528
Query 537 TGGGAATTAAGCAGACCATGACAAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 596
|||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 529 TGGGAATTAAGCGGAACATGATTAATGATGAGAAAGATTTAGATTTGAGTAGTAGTGTAA 588
Query 597 GAGTTGTGACTTCTGAGCTATGTGTTGCAAAGGAATCGATTCATAGAGTAGCTGAAGAGG 656
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 589 GAGTTGTGACTTCAGAGCTAGGTGTTGCTAAGGAATCGATTCATAGAGTAGCTGAAGAGG 648
Query 657 AGAGTGAATTGTGTATGTTAATGGAATCTCTGAAGCTCGAGCTTCAAAACGTGGAGAAAG 716
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 649 AGAGTGAGCTGTGTATGTTAATGGAGTCTCTTAAGCTCGAGCTTCAAAACGTGGAGAAAG 708
Query 717 AACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGATGTA-GAAGCCATTGAGGAT 775
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct 709 CACATTCAGAGCTTAAAGAGATTGAGCAAAGAGAGAGGGAT-CATCAAGCCATTGAAGAT 767
Query 776 CTTG-ATAAGGAAACCAAAGCTGCAAAGGCAGAACTCTCGCTGTTAGAAGAAGAGCTCAA 834
| || | |||||||| |||| |||||| | |||||||| |||||||||||||||||||
Sbjct 768 C-TGAAGAAGGAAACAAAAGATGCAAAAACCCAACTCTCGTTGTTAGAAGAAGAGCTCAA 826
Query 835 GATTGCTCTTTTCGAGGCTCGAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 894
||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 827 GATTGCTGTTTTTGAAGCTCAAGAAGCAAAAGATGCAGAGGAACACGCCAGGGAACGGCT 886
Query 895 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATCAGTTGAGGTGAAAGAAAGTGGTGC 954
||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 887 AAATGTTGCAGTTTTAGAATCTGATTTCAGATCATTAGCTGTGGTGAAAGAAAGTGCTGC 946
Query 955 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGACGAAACACTCAAGACACT 1014
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 947 TGAAGAATTAACTGAGACAGAAGCTTTAAGAGCTTGCAGAGATGAAACACTCAAGACATT 1006
Query 1015 AGAAATGAGTGAGAGAGAGATTGAAGATATAAAAGCTGCAACACAAGATGCGTTGAAGAA 1074
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1007 AGAGATGAGTGAGAGAGAAATTGAAGATATAAAAGCTGCAACACAAGATGCTTTGAAGAA 1066
Query 1075 AGCTGAGATGGCTCAAGAAGCTACAATTGCGGTGGATGTAGAGCTTAAACGACGGTGTAA 1134
||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||
Sbjct 1067 AGCTGAGATGGCTCAAGAAGCTACAATTGTGGTGGATGTTGAGCTGAAACGACGGCGTAA 1126
Query 1135 AGCAGCGAGTAGGATTTTGGCAGAATCCAAAATGTGTGCCAAATCAACAAAGGAAGT-CA 1193
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1127 AGCAGCGAGTAGGATCTTGGCAGAATCCAAAATGTGTGCCAAATCTACCAAGGAAGTGC- 1185
Query 1194 TCAAGTCAAAACCAAGATCAGCTTCAAAAGAAGGTTGTTTGGTCAAGTGTTAGAAGAATC 1253
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1186 TCAAGTCAAAACCAAGATCATCGTCAAAAGAAGGTTGCCTGGTCAAGTGTTAGAAGAATC 1245
Query 1254 TTGGTTTCTTTTGTAATTGTGAAAATCTGTA-A-CTT-ATATAACTAGAAGAAATGCCAC 1310
||||| ||||||||||||||||||||| | ||| | ||||||||||||| || |||
Sbjct 1246 TTGGTCAGAGTTGTAATTGTGAAAATCTGTAGAACTTCA-ATAACTAGAAGAAGTGTCAC 1304
Query 1311 TTTGTTGGTTGTG 1323
|||||||||||||
Sbjct 1305 TTTGTTGGTTGTG 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5