BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478699
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13200.1 | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle contr... 1496 0.0
> AT3G13200.1 | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle control
family protein | chr3:4242125-4244145 FORWARD LENGTH=976
Length=976
Score = 1496 bits (810), Expect = 0.0
Identities = 915/964 (95%), Gaps = 14/964 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCGTAACGCGCCTGAGAGTCCTCTCGTCGTCCTTATCTCGATCTTGGTTGAT 60
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 17 TCTCTCTCTCGTAACACGCCTGAGAGT--TCTCGTCGTCCTTATCTCGATCTTGGTTGAT 74
Query 61 TCGCTCTCTGATCGGAAATTAGGG-TTATTGTTTTCTAAAGATGACGACTGCAGCACGAC 119
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 75 TCGCTCTCCGATCGGAAATTAGGGCTT-TTGTTTTCTGAAGATGACGACTGCAGCACGAC 133
Query 120 CTACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCTT 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 134 CAACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCAT 193
Query 180 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 253
Query 240 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGAGGAGCTTGAAGAGCGTG 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 254 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGATGAGCTTGAAGAGCGTG 313
Query 300 AGAGGAGACATTTCTCATCCAAGGACAAATCATACAGTGATGATAGAGAGCGCAGAAGAG 359
||||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||
Sbjct 314 AGAGGAGACATTTCTCATCAAAAGACAAATCATACAATGATGATAGAGATCGCAGAAGAG 373
Query 360 GAAGTCAGCTTTTACTGGAAGGCTCTAAACGGGACCCTGAAGATCGGATAATTCCTCGCA 419
||||||||||||||||||||| ||| ||| |||| |||||||| ||||| ||||||||||
Sbjct 374 GAAGTCAGCTTTTACTGGAAGACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCA 433
Query 420 GTGTAGATGCtgatgattctgatgttgatatcaaaagtgacgatgatagtgatgacgaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAGTGATGACGAAA 493
Query 480 gtgacgatgatgacGAGGACGACACTGAAGCTCTTATGGCTGAACTTGACCAGATAAAGA 539
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 494 GTGACGATGATGATGAGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGA 553
Query 540 AAGAAAGAGTGGAAGAGAGGCTGAGGAAGGAAAA-GCAGCAGCAGATGGAAGAGCTAAAC 598
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 554 AAGAAAGAGTGGAAGAGAGGCTCAGGAAGGAAAAAG-AGCAGCAGATGGAAGAGCTAAAC 612
Query 599 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCCTTTAAT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 613 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGC 672
Query 659 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCACGTGGTGAAATGAAA 718
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 673 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAAAACCAGGCACGTGGTGAAATGAAA 732
Query 719 GCACCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAC 778
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GCTCCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAT 792
Query 779 AGATACATGAAGTGATTGTT-GAAAA-ATGTGTTATTGCTACTTGTCTGTATGATGATTA 836
|||||||||||||||||||| | || | ||||||||||||||| | |||||||||||||
Sbjct 793 AGATACATGAAGTGATTGTTTGTCAAGA-GTGTTATTGCTACTTCTTTGTATGATGATTA 851
Query 837 TGAACTAAAAGCTTTTATTCTGTCTGGAATTATGATGTCTCTGTACTCAAACAACAACA- 895
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 852 TGA-CTAAAAGCTTTTATTCTGTCTGGAATTACGATGTCTCTGTACTCAAACAACAA-AT 909
Query 896 GTTTT-AAGCTTTATATCAAAAGCCTATGCATTTGATTT-AATGTTTTATCTCACAGATT 953
||||| |||||||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 910 GTTTTTAAGCTTTATATCAAAAACTTATGCATTTGATTTTAATGTAATATCTCACAGATT 969
Query 954 CCTG 957
||||
Sbjct 970 CCTG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5