BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478699 Length=957 Score E Sequences producing significant alignments: (Bits) Value AT3G13200.1 | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle contr... 1496 0.0 > AT3G13200.1 | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle control family protein | chr3:4242125-4244145 FORWARD LENGTH=976 Length=976 Score = 1496 bits (810), Expect = 0.0 Identities = 915/964 (95%), Gaps = 14/964 (1%) Strand=Plus/Plus Query 1 TCTCTCTCTCGTAACGCGCCTGAGAGTCCTCTCGTCGTCCTTATCTCGATCTTGGTTGAT 60 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 17 TCTCTCTCTCGTAACACGCCTGAGAGT--TCTCGTCGTCCTTATCTCGATCTTGGTTGAT 74 Query 61 TCGCTCTCTGATCGGAAATTAGGG-TTATTGTTTTCTAAAGATGACGACTGCAGCACGAC 119 |||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 75 TCGCTCTCCGATCGGAAATTAGGGCTT-TTGTTTTCTGAAGATGACGACTGCAGCACGAC 133 Query 120 CTACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCTT 179 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 134 CAACCTGGGCTCCAGCTAAGGGAGGTAACGAGCAAGGTGGTGCTCGGATCTTTGGTCCAT 193 Query 180 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 194 CTCAGAAGTATTCGTCCCGTGATGTCGCCGCTCACACAACTTTAAAGCCAAGGAGGGAAG 253 Query 240 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGAGGAGCTTGAAGAGCGTG 299 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 254 GGCAACACACTCAAGAGGAACTCCAGAAGATAAATCTTCGTGATGAGCTTGAAGAGCGTG 313 Query 300 AGAGGAGACATTTCTCATCCAAGGACAAATCATACAGTGATGATAGAGAGCGCAGAAGAG 359 ||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||| Sbjct 314 AGAGGAGACATTTCTCATCAAAAGACAAATCATACAATGATGATAGAGATCGCAGAAGAG 373 Query 360 GAAGTCAGCTTTTACTGGAAGGCTCTAAACGGGACCCTGAAGATCGGATAATTCCTCGCA 419 ||||||||||||||||||||| ||| ||| |||| |||||||| ||||| |||||||||| Sbjct 374 GAAGTCAGCTTTTACTGGAAGACTCGAAAAGGGATCCTGAAGAGCGGATTATTCCTCGCA 433 Query 420 GTGTAGATGCtgatgattctgatgttgatatcaaaagtgacgatgatagtgatgacgaaa 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 GTGTAGATGCTGATGATTCTGATGTTGATATCAAAAGTGACGATGATAGTGATGACGAAA 493 Query 480 gtgacgatgatgacGAGGACGACACTGAAGCTCTTATGGCTGAACTTGACCAGATAAAGA 539 ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 494 GTGACGATGATGATGAGGACGACACTGAAGCTCTTATGGCGGAACTCGACCAGATAAAGA 553 Query 540 AAGAAAGAGTGGAAGAGAGGCTGAGGAAGGAAAA-GCAGCAGCAGATGGAAGAGCTAAAC 598 |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| Sbjct 554 AAGAAAGAGTGGAAGAGAGGCTCAGGAAGGAAAAAG-AGCAGCAGATGGAAGAGCTAAAC 612 Query 599 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCCTTTAAT 658 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 613 GCTAAGGAAGAGGAACTTCTCAAAGGAAACCCATTGCTTAATACTCCAACGTCTTTTAGC 672 Query 659 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAGAACCAGGCACGTGGTGAAATGAAA 718 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 673 GTCAAAAGGAGGTGGGATGATGATGTTGTATTCAAAAACCAGGCACGTGGTGAAATGAAA 732 Query 719 GCACCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAC 778 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 GCTCCTAAGCGCTTCATCAATGATACAATCAGGAATGACTTCCACAGAAAATTCCTGCAT 792 Query 779 AGATACATGAAGTGATTGTT-GAAAA-ATGTGTTATTGCTACTTGTCTGTATGATGATTA 836 |||||||||||||||||||| | || | ||||||||||||||| | ||||||||||||| Sbjct 793 AGATACATGAAGTGATTGTTTGTCAAGA-GTGTTATTGCTACTTCTTTGTATGATGATTA 851 Query 837 TGAACTAAAAGCTTTTATTCTGTCTGGAATTATGATGTCTCTGTACTCAAACAACAACA- 895 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 852 TGA-CTAAAAGCTTTTATTCTGTCTGGAATTACGATGTCTCTGTACTCAAACAACAA-AT 909 Query 896 GTTTT-AAGCTTTATATCAAAAGCCTATGCATTTGATTT-AATGTTTTATCTCACAGATT 953 ||||| |||||||||||||||| | |||||||||||||| ||||| ||||||||||||| Sbjct 910 GTTTTTAAGCTTTATATCAAAAACTTATGCATTTGATTTTAATGTAATATCTCACAGATT 969 Query 954 CCTG 957 |||| Sbjct 970 CCTG 973 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46818225004 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5