BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478702
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13222.1 | Symbols: GIP1 | GBF-interacting protein 1 | chr3:... 2835 0.0
> AT3G13222.1 | Symbols: GIP1 | GBF-interacting protein 1 | chr3:4251014-4254267
REVERSE LENGTH=2038
Length=2038
Score = 2835 bits (1535), Expect = 0.0
Identities = 1895/2061 (92%), Gaps = 55/2061 (3%)
Strand=Plus/Plus
Query 1 CCCATATTTtctcgctcctcctccctccgcttctctctctctATAATCTATATACCAACA 60
||||||||| ||| |||||||||||||||||||||| | || | ||| || |||||||
Sbjct 9 CCCATATTTCCTCTCTCCTCCTCCCTCCGCTTCTCT-T-TC--T-CTCTGTA-ACCAACA 62
Query 61 TGAGCAGCAGCAGCTGCGATGGCGGCTCTAGGGTTTCGATTCCGGCCGATTTGCTTGAAA 120
||||||| | |||| |||||||||||||||||||||| |||||||| ||| ||||| |||
Sbjct 63 TGAGCAGGATCAGCGGCGATGGCGGCTCTAGGGTTTCTATTCCGGCTGATCTGCTTCAAA 122
Query 121 CCATTCAAAACATCAGAGAAGTTACCGGTAAACAACATTCCGACGAGGATATCTTCTCTG 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CCATTCAAAACATCAGAGAGGTTACCGGTAAACAACATTCCGACGAGGATATCTTCTCTG 182
Query 181 TCTTTAAGGAGTGTTTCAATGATCCACATGAGACCACTCAGAAGCTCCTCTTTTTAGATA 240
|||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 183 TCTTTAAGGAGTGTTTCAGTGATCCACATGAGACCACTCAGAAGCTTCTCTATTTAGATA 242
Query 241 CATTTCATGAGGTGAGAAGCAAACGGGAGAGAAAGAAAGAGAATTTAGTGCCAAATACAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CATTTCATGAGGTGAGAAGCAAACGGGAGAGAAAGAAAGAGAATTTAGTGCCAAATACAC 302
Query 301 AAGGAAGGGGCCGGACCGGACGGAGGAACTTTGCTTCAAGTTACACAGATGCCAGTAATG 360
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 AAGGAAGGGGCCGGACTGGACGGAAGAACTTTGCTTCAAGTTACACAGATGCCAGTAATG 362
Query 361 GAAGAACTGCAGCTTTTAAAAAGCAGAATGGAGCTAATCACATAATAGGAGGTTCTGGAA 420
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 GAAGAAGTGCAGCTTTTAAAAAGCAGAGTGGAGCTAATCACATAATAGGAGGTTCTGGAA 422
Query 421 CTGCTTCGTCTGCTCCTAACAATGCAAGAAACGACACAAAACCTTCTTCTATAATGGCCC 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 423 CTGCTTCGTCTGCTCCTAACAATGCAAGAAACGACACAAAACCTTCTTCCATAATGGCCC 482
Query 481 CTAACCCTATAAGTCTTCCAAGTGGAATCAGTAACCATAAACTTCAAGATGCTATCATCT 540
| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 483 CGAACCCTATAAGTCTTCCAAGTGGAATCAGTAACCAGAAAATTCAAGATGCTATCATAT 542
Query 541 CCCCTGTGAACAAGG-GAGTCACAGAGGAACAGCCTCTCCCCAAGTCTACTTCTTCGTCT 599
|||||||| |||||| | | ||||||||||||||||||| ||||| |||||||||| |||
Sbjct 543 CCCCTGTGGACAAGGTG-GACACAGAGGAACAGCCTCTCTCCAAGGCTACTTCTTCTTCT 601
Query 600 GAGGATGTTGTTGAGCCGGATAAGTCTAAAGCAAGTACTCTACCAGTGGCTGTATCAGAT 659
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct 602 AAGGATGTTGTTGAGCCGGATAAGTCTAAAGAAAGTAGTGTATCAGTGGCTGTATCAGAT 661
Query 660 TCTGTTGTAGAGAACG--A-T--GTA----G-AG--GGAACTTCTCAGATCCCACAACAG 707
||||||||||| |||| | | || | || | ||||| ||||||||||||||||
Sbjct 662 TCTGTTGTAGAAAACGATACTCAATATGCTGTAGTTGAAACTTTTCAGATCCCACAACAG 721
Query 708 TCAGAGCGAGTCATTAAGAGTGAGGTTGCAGCCAATAAAGGCAAGAATCAGTCGCTTCTC 767
|| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 722 TCCGAGCGAGTCATTAAGAGTGAGGTTGCAGCCAGTAAATGCAAGAATGAGTCGCTTCTC 781
Query 768 AAGTCAGATGTTGGTGAACGGCCACACGTAACATTTCCTGTCCACCTTCAGGTTGCCAAA 827
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 782 AAGTCGGATGTTGGTGAACGGCCGCACGTAACATTTCCTGTCCACATTCAGGTTGCCAAA 841
Query 828 ATGCTGGAAAATGGTCTGACATTTGGGAGCTTCGATTCTAATTTTGTGAGAGAGGCATCT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATGCTGGAAAATGGTCTGACATTTGGGAGCTTCGATTCTAATTTTGTGAGAGAGGCATCT 901
Query 888 TCTGACAA-TTGTACTATTGGGTGTGATGACTCCGATAGTGAGTCTTCTCATGGGACAGC 946
|||||||| || |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 902 TCTGACAAGTT-TACTATTGGGTGTGATGACTCCAATATTGAGTCTTCTCATGGGACA-- 958
Query 947 GGCCTATGGGGCATCAGCTAGGAAAGATATATCATCTTTTTCTCAGGATAAGAATCATGA 1006
||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 959 -GCC------GCATCAGCTAGGAAAGATATATCAACTTTTTCTCAGGATAAGAATCATGA 1011
Query 1007 GATTTCAAATTCAGCAGCTCAGAACGAGCTAACATTGCAGCCAGATCAAACTGTTCTCCC 1066
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 GATTTCAAATTCAGCAGCTCAGAACGAGTTAACATTGCAGCCAGATCAAACTGTTCTCCC 1071
Query 1067 TGTAGAAGGTTCAGAAGGAGATAAAGTAAAGGACGAGTTTTTACCAATCACAGACACTCA 1126
|| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1072 TGAAGAAGGTTCAGAAGGAGATAAAGTAAAGAACGAGGTTTTACCAATCACAGACACTCA 1131
Query 1127 TCAGGCTGCAAAGTGTGATGCTCCACCGATCTCTTACCCTGACCAGTATTCCATAGCTGC 1186
||||||||||||||||||||||||||| ||||| || ||||| ||||||||| |||| ||
Sbjct 1132 TCAGGCTGCAAAGTGTGATGCTCCACCTATCTCCTATCCTGATCAGTATTCCTTAGCAGC 1191
Query 1187 CGCTCAACAGGCAATGCACCTT-A--GGCAACAATACTCTCTAAACTTTTTCCCTTATAG 1243
|||||||||||||||||||||| | |||||||||||||||| |||| |||||||||| |
Sbjct 1192 CGCTCAACAGGCAATGCACCTTTATAGGCAACAATACTCTCTTAACTATTTCCCTTATGG 1251
Query 1244 TCCATATTTcccccccTATTATATGCCGCAACCATACATTCACCAGTACTTGAGCCCAAA 1303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCCATATTTCCCCCCTTATTATATGCCGCAACCATACATTCACCAGTACTTGAGCCCAAA 1311
Query 1304 CGGGTTCCAACAACAGTCTTACTTACCACCCAGAGATGATGCTTCAGCACCTCCAGGGGC 1363
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1312 TGGGTTCCAACAACAGTCTTACTTACCACCCGGAGATGATGCTCCAGCACCTCCAGGGGC 1371
Query 1364 TGAACTACCTCTCACTCACATCAAACCAGGAAGCGACATTGGCAACTCTCCACCTACCAC 1423
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1372 TGAACTACCTCTCACTCACATCAAACCCGGAAGCGACATTGGAAACTCTCCACCTACCAC 1431
Query 1424 AATTCCATTCCCATATGCTTTATACGCCTTCAACCACATCCCATCAGCAGCCACCGTAAA 1483
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1432 GATTCCATTCTCATATACTTCATACGCCTTCAACCACATCCCATCAGCAGCCACCATAAA 1491
Query 1484 CACCACCCTCAAGGAAGAAAAGAAGGAAAACATTTATACAACTGGACCACTGAGTCTAGC 1543
| || | |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1492 TGCTACTCACAAGGAAGAAAAGAAGGAAAACATGTACACAACTGGACCACTGAGTCTAGC 1551
Query 1544 CAATCTGCAGGCCAGTCCCATGTACAACTTTTCCCTTCAAGGTCACCCAATAGCTTTCCC 1603
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1552 CAATCTGCAGGCCAGTCCCATGTACAACTTATCCCTTCAAGGTCAGCCTATAGCTTTCCC 1611
Query 1604 AACCATGCAGCCTGGGATCCCG-GGAGT-ATACCAACAAACACAGCCCGTGCTGGCGCCT 1661
|||||||||| ||||||||| | || || ||| |||||||||||||| | |||||||||
Sbjct 1612 AACCATGCAGGCTGGGATCC-GTGG-GTTATATCAACAAACACAGCCAATACTGGCGCCT 1669
Query 1662 CCTA-CTATATCTACAAGGACTGAACCCATAGGACCCTCACACATAACTAATCAGCAACC 1720
| || |||||||| | |||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 1670 C-TATCTATATCTGCGAGGACTGAACCCATAGGACCATCGCACGTAACTAATCAGCAACC 1728
Query 1721 TCAAGCTGCACTAACAAATCTGGGGAACAATTACTAGGTCAAGGAGTATTACTAGAAAGA 1780
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1729 TCAAGCTGCACGAACAAATCTGGGAAACAACTACTAGGTCAAGGAGTATTACTAGAAAGA 1788
Query 1781 TGCATATTCAGATTGGTAAGAGATGTTCAAGTCTGGAATTTTGAGTGATTTTGTGTACAT 1840
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1789 TGCATATTCAGATTGGTACGAGATGTTTAAGTCTGGAATTTTGAGTGATTTTGTGTACAT 1848
Query 1841 ACTTAGGATATATCACCCCGCAAGAAGAA-ATTAGTATGTGGCAATTTGACAAGGGGACA 1899
|||||||||| |||||||| ||||||||| |||||||| |||||| | ||| |||
Sbjct 1849 ACTTAGGATACATCACCCCCCAAGAAGAAGATTAGTATTTGGCAA---G----GGG-ACA 1900
Query 1900 AGAGAATTGGTGCCCtttttttttttttttttttGTGAGTACCACAAACAGCTTCAAGGA 1959
|||||||||||||| |||| |||||| ||||||||||| |||||||| |||| | |
Sbjct 1901 AGAGAATTGGTGCC-TTTTGTTTTTTCAATTTTTGTGAGTGCCACAAACCGCTTT--G-A 1956
Query 1960 TCTCGTTTATCTGTAATTCTTCCGGATCTTACAATATAACCAAGTGATCAGTTGATATGA 2019
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1957 TCTCGTTTATCTGTAATTCTTCCGAATCTTACAATATAATCAAGTGATCAGTTTATATGA 2016
Query 2020 GCAAATG-AGCATTTATTCTC 2039
|||| || | |||||||||||
Sbjct 2017 GCAAGTGGA-CATTTATTCTC 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5