BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478704
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1762 0.0
> AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254743-4257407 FORWARD LENGTH=1968
Length=1968
Score = 1762 bits (954), Expect = 0.0
Identities = 1211/1327 (91%), Gaps = 50/1327 (4%)
Strand=Plus/Plus
Query 850 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 700
Query 910 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTATGGC-GGTTATGGTGGACCTTAC 968
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 701 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTAT-GCAAGTTATGGTGGACCTTAC 759
Query 969 GGAGGTTTTGATGGAGGTTATGG---TCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 1025
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 760 GGAGGTTTTGATGGAGGGTATGGTCATCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 819
Query 1026 CCTAGTAGGTTTGCTGGGGGATATGGGTATGGTCGTGGCGGTGTAGGCCCTGAATTTGGA 1085
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 820 GCTAGTAGATATGCTGGGGGATATGGGTATGGTCGTGGCAGTGTAGGCCCTGAATTTGGA 879
Query 1086 GGAGGATATGGTAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 1145
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GGAGGTTATAATAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 939
Query 1146 GGCTATTCTAGTCGTTTTGGACCCTATGGGAATGGGTTTGGTGGCGAGGGATATGGTCGT 1205
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 940 GGCTATTCTAGTCGTTTTGGACCCTATGGGAGTGGGTTTGGTGGTGAGGGATATGGCCGT 999
Query 1206 GGAGGAG-GGGAAGGCTA-TGGGGCATATGGTCGTGGAGGTGGGGAAGGCTATGGGGGAT 1263
||||||| || || ||| | ||| |||| ||||||||| |||||||||||||||||||
Sbjct 1000 GGAGGAGAAGG-AGCCTATTTGGG-ATATCCTCGTGGAGGAGGGGAAGGCTATGGGGGAT 1057
Query 1264 ATGGTGGGCCTGGTTACGGTGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1323
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATGGTGGGCCTGGTTACGGCGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1117
Query 1324 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1177
Query 1384 GATAGGGTCGAGGTAATAGCAATCAATAGAAGCTATAGAAGCTTCTCTCACAGGTTTCTC 1443
| ||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1178 GGTAGGGTCGAGGTAATAGCAATCAGTTGGAGCTATAGAAGCTTCTCTCACAGGTTCCTC 1237
Query 1444 TAGATTGTTCCAATCGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1503
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TAGATTGTTCCAATTGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1297
Query 1504 AGGATTGCTAAGGACAGGAAGAGCATCAAAAAACTTTTATTAGACATCTTTTAGT-GTGT 1562
||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1298 AGGGTTGCTAAGGACAGGAAGAGCATCAAAAAGCTTTTATTAGTCATCTTTTAGTTGTGT 1357
Query 1563 GTTTACCTAATTTAAGTGTTGTCTTATCTCTTTAACTTAGATTGTGTTATGTAGACTTTA 1622
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1358 GTTTACCTAATTTAAGTGTTGTCTTATCTCTATAACTTAGATTGTGTTATGTAGACTTTA 1417
Query 1623 GAATATTTGGGTTTGGAGTTTGTTTCTCACTGGCACAAGAATAATTTATCATTTGGTAGT 1682
| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1418 GCATATTTGGGCTTGGAGTTTGTTTCTCACTGGCACAAGAATGATTTATCATTTGGTAGT 1477
Query 1683 CTTGTTAGATGATCAATCACTCGCTTAGCTTAGGTTTGCACAATCATACGAATTAGCTAA 1742
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 1478 CTTGTTAGATGATCAATTACTCGCTTAGCTTAGTTTT-CACAATCATACGAATTAGCTTA 1536
Query 1743 AGAAGCTCGGCAAAATGTGCATTCATCTATTCTTTAGAGCTCAAGTTAAA--CTTTATGT 1800
|||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1537 AGAAGCTCTGCAAAATGTGCACTCATCTATTCTTTAGAGCTCAAGTTGAATGCTTTATGT 1596
Query 1801 GGTGTCTTCTTATCTCTGTAGATTTTGTTGTTCCGAACAAAGGTTCGAGGGCAGTTAGTG 1860
||| |||| | ||||||||| |||||||||| | ||||||||||| || |||||||||||
Sbjct 1597 GGTCTCTTGT-ATCTCTGTACATTTTGTTGTGCTGAACAAAGGTTTGACGGCAGTTAGTG 1655
Query 1861 TATGTGTAAGTAAGTAGGCATATTTTTGTCAGCTGCGTACGTAGGTTCTAGCTACAAATT 1920
||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1656 CATGTGTAAGTA-G--G-CATATTTTTGTCAGCTGCATACGTAGGTTCTAGCTACAAATT 1711
Query 1921 GGAATTGTATATGTTTTAAAACG-AA--T-----------GTTTTTGAAAATTATCTATA 1966
|||||||||| ||||| |||||| || | |||||||||||| |||||||
Sbjct 1712 GGAATTGTATGTGTTTGAAAACGTAAAATCAATTATAAATGTTTTTGAAAATCATCTATA 1771
Query 1967 TAAGCATGGTTATTATTTGGTTTTTGTTTCCTTATTTTTTAGGGTAAGGACCACGGATAT 2026
||||||||||||| | |||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1772 CAAGCATGGTTATT-T--GGTTCTTGTTTCCTTATTTTTTCGGGTAAGGGCCACGGATAA 1828
Query 2027 TTTGTTTGAGATTCGTTGTTCTGATAATGTGGATTTTGTTATCTATAATTTCTCATTAAA 2086
|| ||| || ||| | ||||| ||||||||| ||||||||||| ||||||||| | |||
Sbjct 1829 TTGGTTAGACATT-G--GTTCTAATAATGTGGGTTTTGTTATCTGTAATTTCTCGTCAAA 1885
Query 2087 ATGAT-TACATTTTAGTTTGTATCATTAAATAAATTTCAC--ATTGTACATGCTTTTAGA 2143
||||| ||| | || |||||||||| ||| |||| |||||||||||||||| |
Sbjct 1886 ATGATGTAC-T----GT----ATCATTAAATGAATATCACTTATTGTACATGCTTTTATA 1936
Query 2144 AGTTAAT 2150
|||||||
Sbjct 1937 AGTTAAT 1943
Score = 966 bits (523), Expect = 0.0
Identities = 595/628 (95%), Gaps = 12/628 (2%)
Strand=Plus/Plus
Query 1 CAGATCTTATCAAAACCCTAGCTTTCGGTTTCTCTCTCGATCCTTAGCTCGGAGAATTTC 60
||||||||||||||||||||||||||||| ||||||||||||||| | || |
Sbjct 28 CAGATCTTATCAAAACCCTAGCTTTCGGTGTCTCTCTCGATCCTT---T---AG-----C 76
Query 61 TCAATCGAAAACTGTA-TTAGGAGCTACCATGGGTTCCAGATCTCGTAATGATAATTTCC 119
|||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 77 TCAATCGAAAACTGAATTTAGGAGCTGCGATGGGTTCCAGATCTCGTAATGATAATTTCC 136
Query 120 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 196
Query 180 CCAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CTAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 256
Query 240 TGCGTGATCGACATTCTGGACAACCTAGGGGTTTCGGTTTCATCACCTTTGCTGACCCTT 299
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 257 TGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCACCTTCGCTGACCCTT 316
Query 300 CTGTCGTTGACAAAGTTATCGAAGATAATCATATCATCAATGGCAAACAGGTTGAGATCA 359
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 317 CTGTTGTTGACAAAGTTATCGAAGATACTCATGTCATCAATGGCAAACAGGTTGAGATCA 376
Query 360 AAAGGACTATTCCAAAAGGTGCTGGCGGCAATCAGTCTAAGGATTTCAAAACAAAGAAGA 419
||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 377 AAAGGACTATTCCGAAAGGTGCTGGTGGCAATCAGTCAAAGGACATCAAAACAAAGAAGA 436
Query 420 TTTTCGTTGGTGGTATACCCTCCACTGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 479
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 437 TTTTCGTTGGTGGTATACCCTCAACGGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 496
Query 480 AGTATGGGAACGTGGTGGAGCACCAGGTTATCCGAGACCATGAAACAAACAGGTCCAGAG 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 497 AGTATGGGAACGTGGTGGAGCACCAGGTTATTCGAGACCATGAAACAAACAGGTCCAGAG 556
Query 540 GTTTTGGTTTTGTTATTTTTGACAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 599
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 557 GTTTTGGTTTTGTAATTTTTGATAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 616
Query 600 ACATGATCGATATGGCAGACACTCAGGT 627
||||||||||||||||||||||||||||
Sbjct 617 ACATGATCGATATGGCAGACACTCAGGT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106625957580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5