BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478704 Length=2150 Score E Sequences producing significant alignments: (Bits) Value AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1762 0.0 > AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4254743-4257407 FORWARD LENGTH=1968 Length=1968 Score = 1762 bits (954), Expect = 0.0 Identities = 1211/1327 (91%), Gaps = 50/1327 (4%) Strand=Plus/Plus Query 850 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 AGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCTCTAAACCGTTCACCTCCTTCTTACG 700 Query 910 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTATGGC-GGTTATGGTGGACCTTAC 968 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 701 GTAGTCACCCTAGAGGTCGTTCTTCTAACGATAGTTAT-GCAAGTTATGGTGGACCTTAC 759 Query 969 GGAGGTTTTGATGGAGGTTATGG---TCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 1025 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 760 GGAGGTTTTGATGGAGGGTATGGTCATCCTCCAGGTCCCATTAGGTCACATGGAGGTCCT 819 Query 1026 CCTAGTAGGTTTGCTGGGGGATATGGGTATGGTCGTGGCGGTGTAGGCCCTGAATTTGGA 1085 ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 820 GCTAGTAGATATGCTGGGGGATATGGGTATGGTCGTGGCAGTGTAGGCCCTGAATTTGGA 879 Query 1086 GGAGGATATGGTAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 1145 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 GGAGGTTATAATAATTATGGGGGTGGTAGTTTAGGAGGTTACCGGAATGAACCACCCCTT 939 Query 1146 GGCTATTCTAGTCGTTTTGGACCCTATGGGAATGGGTTTGGTGGCGAGGGATATGGTCGT 1205 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| Sbjct 940 GGCTATTCTAGTCGTTTTGGACCCTATGGGAGTGGGTTTGGTGGTGAGGGATATGGCCGT 999 Query 1206 GGAGGAG-GGGAAGGCTA-TGGGGCATATGGTCGTGGAGGTGGGGAAGGCTATGGGGGAT 1263 ||||||| || || ||| | ||| |||| ||||||||| ||||||||||||||||||| Sbjct 1000 GGAGGAGAAGG-AGCCTATTTGGG-ATATCCTCGTGGAGGAGGGGAAGGCTATGGGGGAT 1057 Query 1264 ATGGTGGGCCTGGTTACGGTGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1323 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1058 ATGGTGGGCCTGGTTACGGCGGTGCATATGAATCTGGTGGCCCAGGTGGCAGTTATGAAG 1117 Query 1324 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 GAGCAGGTGGTCCATATGGGAGGGGTTATAGTAGCAGTAGTCGATACCATCCGTATGCAA 1177 Query 1384 GATAGGGTCGAGGTAATAGCAATCAATAGAAGCTATAGAAGCTTCTCTCACAGGTTTCTC 1443 | ||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||| Sbjct 1178 GGTAGGGTCGAGGTAATAGCAATCAGTTGGAGCTATAGAAGCTTCTCTCACAGGTTCCTC 1237 Query 1444 TAGATTGTTCCAATCGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1503 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 TAGATTGTTCCAATTGCTCTAGGTGCATTCTAGAGTTATCATGTAGCGCCAACATCAGGA 1297 Query 1504 AGGATTGCTAAGGACAGGAAGAGCATCAAAAAACTTTTATTAGACATCTTTTAGT-GTGT 1562 ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| Sbjct 1298 AGGGTTGCTAAGGACAGGAAGAGCATCAAAAAGCTTTTATTAGTCATCTTTTAGTTGTGT 1357 Query 1563 GTTTACCTAATTTAAGTGTTGTCTTATCTCTTTAACTTAGATTGTGTTATGTAGACTTTA 1622 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1358 GTTTACCTAATTTAAGTGTTGTCTTATCTCTATAACTTAGATTGTGTTATGTAGACTTTA 1417 Query 1623 GAATATTTGGGTTTGGAGTTTGTTTCTCACTGGCACAAGAATAATTTATCATTTGGTAGT 1682 | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1418 GCATATTTGGGCTTGGAGTTTGTTTCTCACTGGCACAAGAATGATTTATCATTTGGTAGT 1477 Query 1683 CTTGTTAGATGATCAATCACTCGCTTAGCTTAGGTTTGCACAATCATACGAATTAGCTAA 1742 ||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| | Sbjct 1478 CTTGTTAGATGATCAATTACTCGCTTAGCTTAGTTTT-CACAATCATACGAATTAGCTTA 1536 Query 1743 AGAAGCTCGGCAAAATGTGCATTCATCTATTCTTTAGAGCTCAAGTTAAA--CTTTATGT 1800 |||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||| Sbjct 1537 AGAAGCTCTGCAAAATGTGCACTCATCTATTCTTTAGAGCTCAAGTTGAATGCTTTATGT 1596 Query 1801 GGTGTCTTCTTATCTCTGTAGATTTTGTTGTTCCGAACAAAGGTTCGAGGGCAGTTAGTG 1860 ||| |||| | ||||||||| |||||||||| | ||||||||||| || ||||||||||| Sbjct 1597 GGTCTCTTGT-ATCTCTGTACATTTTGTTGTGCTGAACAAAGGTTTGACGGCAGTTAGTG 1655 Query 1861 TATGTGTAAGTAAGTAGGCATATTTTTGTCAGCTGCGTACGTAGGTTCTAGCTACAAATT 1920 ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||| Sbjct 1656 CATGTGTAAGTA-G--G-CATATTTTTGTCAGCTGCATACGTAGGTTCTAGCTACAAATT 1711 Query 1921 GGAATTGTATATGTTTTAAAACG-AA--T-----------GTTTTTGAAAATTATCTATA 1966 |||||||||| ||||| |||||| || | |||||||||||| ||||||| Sbjct 1712 GGAATTGTATGTGTTTGAAAACGTAAAATCAATTATAAATGTTTTTGAAAATCATCTATA 1771 Query 1967 TAAGCATGGTTATTATTTGGTTTTTGTTTCCTTATTTTTTAGGGTAAGGACCACGGATAT 2026 ||||||||||||| | |||| ||||||||||||||||| |||||||| ||||||||| Sbjct 1772 CAAGCATGGTTATT-T--GGTTCTTGTTTCCTTATTTTTTCGGGTAAGGGCCACGGATAA 1828 Query 2027 TTTGTTTGAGATTCGTTGTTCTGATAATGTGGATTTTGTTATCTATAATTTCTCATTAAA 2086 || ||| || ||| | ||||| ||||||||| ||||||||||| ||||||||| | ||| Sbjct 1829 TTGGTTAGACATT-G--GTTCTAATAATGTGGGTTTTGTTATCTGTAATTTCTCGTCAAA 1885 Query 2087 ATGAT-TACATTTTAGTTTGTATCATTAAATAAATTTCAC--ATTGTACATGCTTTTAGA 2143 ||||| ||| | || |||||||||| ||| |||| |||||||||||||||| | Sbjct 1886 ATGATGTAC-T----GT----ATCATTAAATGAATATCACTTATTGTACATGCTTTTATA 1936 Query 2144 AGTTAAT 2150 ||||||| Sbjct 1937 AGTTAAT 1943 Score = 966 bits (523), Expect = 0.0 Identities = 595/628 (95%), Gaps = 12/628 (2%) Strand=Plus/Plus Query 1 CAGATCTTATCAAAACCCTAGCTTTCGGTTTCTCTCTCGATCCTTAGCTCGGAGAATTTC 60 ||||||||||||||||||||||||||||| ||||||||||||||| | || | Sbjct 28 CAGATCTTATCAAAACCCTAGCTTTCGGTGTCTCTCTCGATCCTT---T---AG-----C 76 Query 61 TCAATCGAAAACTGTA-TTAGGAGCTACCATGGGTTCCAGATCTCGTAATGATAATTTCC 119 |||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 77 TCAATCGAAAACTGAATTTAGGAGCTGCGATGGGTTCCAGATCTCGTAATGATAATTTCC 136 Query 120 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 AGTCCGGCGATGGCGCTAGTCCTGGGAAAATATTCATTGGAGGATTGCACAAAGACACGA 196 Query 180 CCAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 239 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 197 CTAATACTGTGTTCAATAAGCACTTTGGCAAGTACGGGGAGATTACAGATTCTGTCATTA 256 Query 240 TGCGTGATCGACATTCTGGACAACCTAGGGGTTTCGGTTTCATCACCTTTGCTGACCCTT 299 |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 257 TGCGAGATCGACATACTGGACAACCTAGGGGTTTCGGTTTCATCACCTTCGCTGACCCTT 316 Query 300 CTGTCGTTGACAAAGTTATCGAAGATAATCATATCATCAATGGCAAACAGGTTGAGATCA 359 |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 317 CTGTTGTTGACAAAGTTATCGAAGATACTCATGTCATCAATGGCAAACAGGTTGAGATCA 376 Query 360 AAAGGACTATTCCAAAAGGTGCTGGCGGCAATCAGTCTAAGGATTTCAAAACAAAGAAGA 419 ||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 377 AAAGGACTATTCCGAAAGGTGCTGGTGGCAATCAGTCAAAGGACATCAAAACAAAGAAGA 436 Query 420 TTTTCGTTGGTGGTATACCCTCCACTGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 479 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 437 TTTTCGTTGGTGGTATACCCTCAACGGTTACAGAAGATGAACTTAAGGACTTCTTTGCCA 496 Query 480 AGTATGGGAACGTGGTGGAGCACCAGGTTATCCGAGACCATGAAACAAACAGGTCCAGAG 539 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 497 AGTATGGGAACGTGGTGGAGCACCAGGTTATTCGAGACCATGAAACAAACAGGTCCAGAG 556 Query 540 GTTTTGGTTTTGTTATTTTTGACAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 599 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 557 GTTTTGGTTTTGTAATTTTTGATAGCGAAGAAGTCGTAGATGAATTATTGTCCAAAGGAA 616 Query 600 ACATGATCGATATGGCAGACACTCAGGT 627 |||||||||||||||||||||||||||| Sbjct 617 ACATGATCGATATGGCAGACACTCAGGT 644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106625957580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5