BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478705

Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13227.1 | Symbols:  | serine-rich protein-related | chr3:42...   699    0.0  


> AT3G13227.1 | Symbols:  | serine-rich protein-related | chr3:4258006-4258505 
FORWARD LENGTH=500
Length=500

 Score =  699 bits (378),  Expect = 0.0
 Identities = 458/493 (93%), Gaps = 19/493 (4%)
 Strand=Plus/Plus

Query  1    ACAAATGGAAGGGAAAGAGGAAGAAGCAAAGAGGAGGATGATGATGAAGATCAAACTTAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  19   ACAAATGGAAGGGAAAGAGGAAGAAGCAAAGAGGAGGATGATGATGAAGATCAAACTTAA  78

Query  61   GGAGACAGAAGCAGA-GATAAACCAAGATGATATTAAAAGACAAGAAGCTTACAATATGT  119
            ||||||||||||||| | ||| |||||| || ||||||||||||||||||||||| ||||
Sbjct  79   GGAGACAGAAGCAGACG-TAAGCCAAGACGACATTAAAAGACAAGAAGCTTACAACATGT  137

Query  120  CTCCACGTGTACGTCgtggtggtggtggtgg---tggCTCGGTAGGTATGAGCAAGTCAT  176
            ||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  138  CTCCACGCGTACGTCGTGGTGGTGGTGGTGGCGGTGGCTCGGTAGGTATGAGCAAGTCAT  197

Query  177  CGAGCGTGAGGCAAAACTGTTTATGCGCACCAACGACACACCCTGGCTCCTTCAGGTGCC  236
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  198  CGAGCGTGAGGCAAAACTGTTTATGCGCACCAACTACACACCCTGGCTCCTTCAGGTGCC  257

Query  237  GTTACCACCGTCGCAACGCTGGACTCGGCATGTCTCGTGGCATATCCGTTCCCTCTAACC  296
            ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct  258  GTTACCACCGTCGTAACGCTGGACTCGGGATGTCTCGTGGCACATCCGTTCCCTCTAACC  317

Query  297  TTTCCATGTTGGGTGGTGGAGACTCTATCTCTGGTTCTCCCAAGTGAT--TCA-TATAT-  352
            |||||||||||| ||||||||||||||  | |    ||||||||||||  | | ||||| 
Sbjct  318  TTTCCATGTTGGCTGGTGGAGACTCTAA-T-T----CTCCCAAGTGATGATTAATATATA  371

Query  353  TAATGTGTTTCTTCTCATCAATTTAAAATTCTCGTATGTGTGTGTGTATATACAAAAATG  412
            | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  372  TTATGTGTTTCTTCTCATCAATTTAAAATTCTCGTATGTGTCTGTGTATATACAAAAATG  431

Query  413  CATAAGTAGAGAAATCTCTGGATATTCATTCACTTTGCTGTTTGCACAAATGAAATAAAT  472
            ||||||| ||||||||||||||||||||  |  |||||||||||||||||||||||||||
Sbjct  432  CATAAGTCGAGAAATCTCTGGATATTCA--C--TTTGCTGTTTGCACAAATGAAATAAAT  487

Query  473  TCAAGTGATCGTG  485
            |||| ||||||||
Sbjct  488  TCAAATGATCGTG  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23107707620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5