BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478706
Length=3285
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13225.2 | Symbols: | WW domain-containing protein | chr3:4... 3969 0.0
> AT3G13225.2 | Symbols: | WW domain-containing protein | chr3:4258770-4262911
REVERSE LENGTH=2895
Length=2895
Score = 3969 bits (2149), Expect = 0.0
Identities = 2478/2637 (94%), Gaps = 21/2637 (1%)
Strand=Plus/Plus
Query 640 TTCTATTTTCAGGTCAGAAAACAGGAAACCCTTTGCTTTTACTTGGCCAGTATAGTGATG 699
|||| | ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 220 TTCT-TCTTCAGGTCAGAAAACAGAAAATCCTTTGCTTTTACTTGGGCAGTATAGTGATG 278
Query 700 ATGAGGTGGAAGAAGATTCGGATAAGAAAGCAGATGATGCCTCTGCAGATAGTTCCTTAA 759
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||
Sbjct 279 ATGAGGTGGAAGAAGATTCGGATAAGAAGGCAGATGATACCTCTGCAGATAGTTTCTTAG 338
Query 760 CCAATAAAAATGAGCAGGTCGATGGATTAATTCAAGAAGGACACAAAGATACAAATATCA 819
||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct 339 CCAATAAAAATGAGCAGGTTGATGGATTAATTCAAGGAGGACACAAAGATACGAATATCA 398
Query 820 AATCAGGTGCAGTTACCA-CA--ATGCAGATGGCTGACCAACAGCAGGCAGGGGAGAATT 876
||||||||||||| |||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct 399 AATCAGGTGCAGTCACCACCACTATGCAGATGGCTGATCAACAGCAGACAGGGGAGAATT 458
Query 877 CTTCTGCACTTGATTATAGAGCTGAAGGAGAAAGTGGTTTTGTCACAGTGAGTAACTCAA 936
||||||| ||||||| ||||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 459 CTTCTGCTCTTGATTCTAGAGCTGAAGTAGAAACTGGTTATACCACAGTGAGTAACTCAA 518
Query 937 CAATC-TTGGATGGACTAAATAAGCAGACAGATCCCTCAGTTCAAGCATCTGGCAGCGTG 995
||| | |||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 519 CAA-CATTGGATGGACTAAACAAGCAGACAGTTCCCTCAGTTCAAGCATCTGGCAGTGTG 577
Query 996 TCTTTGGAGCACCAGGCTCCCACAGATGTTACTTCGCAGTGGAAGATGATTTTGCATGAG 1055
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 578 TCTTTGGAGCACCAGGCTCCCACAGATGTTACGTCGCAGTGGAAGATGATTCTGCATGAG 637
Query 1056 GAGAGCAATCAGTATTACTACTGGAATACAGAAACTGGGGAAACTTCGTGGGAAATT-CC 1114
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 638 GAGAGCAATCAGTATTATTACTGGAATACAGAAACTGGAGAAACTTCGTGGG-AATTGCC 696
Query 1115 TACAGTTTTGACTCAAACTGCCTGTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 1174
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 697 TACAGTTTTGACTCAAACTACCTTTGCATATGGGACTGGGTACAATGAGTCTGGGCCCAT 756
Query 1175 GGTTACAGATGAGTCCACATTGATTTCTGGTGTTGAACCAAGCTATTTCCTACCCGTGCA 1234
||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 757 GGTTACAGATGCTTCCACCTTGATTTCAAGTGTTGAACCAAGCTATTTCGTACCCGTGCA 816
Query 1235 AAATAGTTTCACAGGAACTGACTATTCGACTTTTCCAACTGTTGAGCTGGATGAGAGAAA 1294
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 817 AAATAGTTTCACAGGAACTGACTATTCTACTTTTCCAACTGTTGAGCTGGATGGGAGAAA 876
Query 1295 CAAAAATGAAGATCTATATGTCAAAAGTTTAGGAACAGATGGTCATCAAGTTGAATGTCG 1354
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 877 CAAAAGTGAAGATCTATATGTCAAAAGTTTAGGAACTGATGGTCATCAAGTTGAATGTCG 936
Query 1355 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GATAGACTCTGTTGTTAGTTGTCAGGAGGACCTTTCAAGGCCAGGAAATTCAGATCATGT 996
Query 1415 GCATACTAATTTTGATGCAGGAGCGGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1474
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 997 GCATACTTATTTTGATGCAGGAGCTGCTACTGACCTCCCATCTCGCTTGTTGAGTCAAAT 1056
Query 1475 CGAAGGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CGAAAGCTTACTGGAGAAGCTGAGGTCTCTGAAGAGGTCGCATGGGAACTTTCACAGCAA 1116
Query 1535 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TGAGCAGATAACAAAGTACATTCTGGAGGTTGAAGTCAGACATTCTGATGTAAAGGCGCT 1176
Query 1595 CATATTGGATACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1654
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CATATTGGACACCTCACCTTTACTTTCTTTTTGGCTTCACACTGAGAAACAACTTAAGCG 1236
Query 1655 TCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GCTGGAAGATAGTGTTAACGATGAGATTTACCAGCTTGCAAAATCTGCAGTAATGGATGA 1296
Query 1715 AATTGCAGAAACTAACAAAAGCCCTCCCGAAGAAAAGTTGGTAGCAGATGCTAATACAGA 1774
| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1297 AC---CAGAAACTAACAAAAGCCCTCCCAAAGAAAAGTTGGTGGCAGATGCTAATACAGA 1353
Query 1775 GAGTGAATCCGAGGGCAGTGAGAGAGATGGAGAGCTAGCTCTATCTGGAAAATCTCTTCA 1834
|||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1354 GAGTGAGTCCGAGGACAGTGAGAGAGATGGAGAGTTAGCTCAATCTGGAAAATCTCTTCA 1413
Query 1835 TTCAGATGGATCAGCTGATGTGATCGGCGATGGATCTCCTAAACACTCCCCAAGTCATCC 1894
|||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1414 TTCAGATGAATCAGCTGATGGGAGCGGCGATGGATCTCCTAAACACTCCCCAAATCATCC 1473
Query 1895 AGCTGGGCAGTCTGATATTACTCCTTCAACTGAGATGCTTCAGAAGGCTGGCTCCCCAGA 1954
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1474 AGCTGGGCAGTCTGATATTATTCCTTCAACTGAGATGCTTCAGAAGGCCGGCTCCCCAGA 1533
Query 1955 TGTGGAAGATATTGACATGGATGTGGATATGGAGGTTGAAGAATCAGTTCCAGTGTCTTC 2014
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1534 TGTGGAAGATGTTGACATGGATGTGGATATGGAAGTTGAAGAATCAGTTCCAGTGTCTTC 1593
Query 2015 TGTTCAAGTGATAGATACTTCTGATGGTAAGATATTCAGCCAAACAGAGCCATCCAACCT 2074
||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1594 TGTTCAAGTGATAGACGCTTCTGATGGTAAGATGTTCAGTCAAACAGAGCCATCCAACCT 1653
Query 2075 CCATGCAGATGTTCCACTACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGACAG 2134
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1654 TCATACAGATGTTCCACCACCTCCGGGTGAGGAATGGATTCCACCACCGCCGTCTGAGAG 1713
Query 2135 TGAAGATGTTCCTCCGCCGCCACTAGACAGTTATAGCGAACCAATTCCCCCACCACCTGA 2194
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1714 TGAAGATGTTCCTCCACCGCCACCAGACAGTTATAGCGAACCAATTCCTCCACCACCTGA 1773
Query 2195 AAATGGCCATTTCCCTTCATCTTTGTCCAGTGATTCTCTTGGAGTTCCCTATACTGTACC 2254
||||||||| || ||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1774 CAATGGCCATGTCGCTTCATCTTTGTCCAGTGACTCTCTCGGAGTTCCCTATACCGTACC 1833
Query 2255 TCAATCTTATATGCAGCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 2314
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 TCAATCATATATGCATCAATCTGCTGATTATGCGACACAATACAACTTATCCTATCCAGA 1893
Query 2315 GTCCAATTATCAATATACCAATTCTGTTGCTCTAGATCCTAATACTCAGTTCTATGGCCA 2374
|||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 1894 GTCCAATTATCAATATACCAATGCTGTTACTCTAGCTCCTAATACTCAGTTCTATGGCCA 1953
Query 2375 TGTCGATGAATCTCAAGTTTCTCTTCCCCAGTCGACATTTTATTATGAAACTGTTCCTGG 2434
||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1954 TGTGGATGGATCTCAAGTTTCTCTTCCCCAATCCACATTTTATTATGAAACTGTTCCTGG 2013
Query 2435 TACAAGTGAAGTTGCTCCCACAGCAGCCAGTGCTGGTGAAGCTTATTATGATTTCAATGG 2494
||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 2014 TACAACTGAAGTTGTTCCTGCAGCAGCCAGTGCTGGTGAAGCTTATTACGATTTCAATGG 2073
Query 2495 TGCAGCTCCACTTTTTCCTATCATTAGCTCCACG-GAGTCATCGCTACATCACAGTGGAG 2553
|||||||||||| |||||| |||||||||| | |||||||| ||||||||||||||||
Sbjct 2074 TGCAGCTCCACTGTTTCCTGTCATTAGCTCGG-GTGAGTCATCTCTACATCACAGTGGAG 2132
Query 2554 TTGGTTCTGCTAATCACTACATCTCAAGCAATTCTTCTACAGTTGTAGTGCCTAGTTCGA 2613
||||||||||||||||| ||||| ||| ||| |||||||||| || ||||||||||||||
Sbjct 2133 TTGGTTCTGCTAATCACCACATCCCAAACAACTCTTCTACAGCTGCAGTGCCTAGTTCGA 2192
Query 2614 GAACCAATGACTTTGCTGAGATTGCATCTTCGGCAACTACTTCTCAATCCACAGATGTTA 2673
|| ||||||||| | ||||| ||| |||||| |||||| ||||| |||||||||||||||
Sbjct 2193 GATCCAATGACTCTACTGAGGTTGGATCTTCAGCAACTGCTTCTAAATCCACAGATGTTA 2252
Query 2674 CAGGTGAATCGTCTCTATTAGCAAAGGGTCAAACGAAAGTGAAACGG-CTAAAAAAGCGG 2732
|| ||| |||||||||||||||||| |||||||| |||||||||||| | |||||||
Sbjct 2253 CAAGTGGATCGTCTCTATTAGCAAAAGGTCAAACTAAAGTGAAACGGAC-AAAAAAGAAA 2311
Query 2733 ACAGTAGCTGCTACATCCACATTGAGGTCAAATAAAAAGGTTTCGAGTTTGGTTGACAAG 2792
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2312 ACAGTAGCTGCTACATCTACATTGAGGTCAAATAAAAAGGTTTCCAGTTTGGTTGACAAG 2371
Query 2793 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGTgaagaagaagaagatgattccggaatc 2852
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 2372 TGGAAAGCTGCGAAAGAGGAGCTAAACGATAGCGAAGAAGAAGAAGATGATTCCGAAATC 2431
Query 2853 ctagatagaaaaagaaaacgagaaattgaagaatggaaaTCTCGACAAATCGCAAGTGGA 2912
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2432 CTAGATAGAAAAAGAAAACGAGAAATCGAAGAATGGAAATCTCGACAAATCGCAAGTGGA 2491
Query 2913 GAGGCTAAAGACAACGCAAATTTCCAACCTCTCGGTGGTGACTGGCGTGAGAAAGTGAAG 2972
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2492 GAGGCTAAAGACAACGCAAATTTCCAACCCCTGGGTGGTGACTGGCGTGAGAAAGTGAAA 2551
Query 2973 CGGAAGAGAGAACGAGCCGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAGCCT 3032
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2552 CGGAAGAGAGAACGAGCTGAGAAGTCTCAGAAGAAAGACCCCGAAAAGCAGCAAAAACCT 2611
Query 3033 GATCTAACCAAACTCTCAGCAAATCTCCCATCGGGATGGCAGGCATATTGGGACGAATCT 3092
|||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 2612 GATCTAACAAAACTCTCAGCAAATCTCCCGTCGGAATGGCAGGCATATTGGGACGAATCT 2671
Query 3093 ACCAAAAAAGTTTACTATGGGAATACAAGTACATCTCAAACTAGTTGGACACGACCCACT 3152
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2672 ACCAAAAAAGTTTACTATGGGAATACGAGTACATCTCAAACCAGTTGGACACGACCCACT 2731
Query 3153 ACCTGAACCTCAATTACTTTCTCGAC-C-CAtttttttACTATTTCTTCTGTGATACATT 3210
||||||||||||||| |||||||| | | |||||||| || |||||||||||||||||||
Sbjct 2732 ACCTGAACCTCAATTGCTTTCTCGTCTCACATTTTTT-ACAATTTCTTCTGTGATACATT 2790
Query 3211 TGTTTTAGATTTCTTTCTTCTCTTATCTTTATGTAAATTTATTACAGAGCTAGTGTT 3267
||||||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 2791 TGTTTTAGATT-CT--CTAATCTTACCTTTATGTAAATTTATTACAGAGCTAGTGTT 2844
Score = 350 bits (189), Expect = 6e-95
Identities = 203/209 (97%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 1 GGTTAGAGTCTGAAGAGAGATTGTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 27 GGTTAGAGTCTGAAGAGAGA--GTAAGAAATCTGATGGGGAAGAGAAAAGAGCGTCGTTA 84
Query 61 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCTCCT- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 85 CGCCGCCATGAATAGCACCGGCCGTCGTGTCAAGCTTGATCTCTTTGCGGAACCCT-CTG 143
Query 120 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GAGATTTGGGTGGCTCAGATGTGCGTGATGGAGTTGAGCGGGAACAAACAGAGCTTAATG 203
Query 180 AGTTACCCAATTCACCTTCTTCTTCAGGT 208
|| ||||||||||||||||||||||||||
Sbjct 204 AGCTACCCAATTCACCTTCTTCTTCAGGT 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163443900294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5