BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478708
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13229.1 | Symbols: | Plant protein of unknown function (DU... 1561 0.0
> AT3G13229.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr3:4268444-4269691 REVERSE LENGTH=1248
Length=1248
Score = 1561 bits (845), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 19/1080 (2%)
Strand=Plus/Plus
Query 1 AGTTCGTTTCACCAAACAAATTCAGGTCGGCAAGATTTTCTCTTGAGAAACAA-TCAAGA 59
|||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||
Sbjct 90 AGTTCGTTTCACCAAACAAATTAAGGTCATCAA-ATTTTCTCTTGAG-AACAATTC-AGA 146
Query 60 GTTCTTAAATCTCCAAATGACAATTATATACCTGAGGCCAAGCCTTTGGGTTTTGTTCAT 119
||||||||||||||| |||||||| | | |||||||||||||||| ||||||||||||||
Sbjct 147 GTTCTTAAATCTCCAGATGACAATCAAAAACCTGAGGCCAAGCCTGTGGGTTTTGTTCAT 206
Query 120 GCCTCATTTATACCTATAAAGATTTTAAGACAC-A-ACAACTTACGAGAAATGTTTAATC 177
|||| || | ||| |||||||||| |||| || | ||||| ||||||||||||||||||
Sbjct 207 ACCTCGTTCAGACCGATAAAGATTTCAAGAAACAACACAACGTACGAGAAATGTTTAATC 266
Query 178 AATCCAGCTCTGTCTCGTTACTCTACGTAGTTGAAATCGCCAAAACTA-CACAAAACGTA 236
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 267 AATCCAGCTCTGTCTCGTTAATCTACGTAGTTGAAATCGCCAAAAC-ACCACAAAACGTA 325
Query 237 GACGTCACTTGGTCCAAAACCATGTCATCACATTCCTTGACCATCAAAATCGAGAATC-T 295
|||||||||||||| ||||||| || |||||||| || ||||||||||||||||| | |
Sbjct 326 GACGTCACTTGGTCTAAAACCACCTCCTCACATTCTTTAACCATCAAAATCGAGAA-CGT 384
Query 296 CAAAGACGAGCAACATAATCATCATCAACCGGTGAAGATAGATCTTTCAGGTTCTTCGTT 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAAAGACGAGCAACAGAATCATCATCAACCGGTGAAGATAGATCTTTCAGGTTCTTCGTT 444
Query 356 TTGGGCCAAAAAGGGTCTCAAGAGCTTAGAAGCTAACGGGGCTAGGGTTGACGTATACTG 415
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 445 TTGGGCCAAAAAGGGTCTCAAGAGCTTAGAAGCTAACGGAACTAGAGTCGACGTATACTG 504
Query 416 GGATTTTCGTCAGGCCAAATTCTCAAACTTCCCTGAACCTTCCTCTGGCTTCTACGTCTC 475
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 505 GGATTTTCGTCAAGCCAAATTCTCGAACTTCCCTGAACCTTCCTCTGGCTTCTACGTCTC 564
Query 476 TCTCGTATCCCAAAACGCAACCATTTTAACGATGGGGGATTTAAAGAACGAAGCTTTGAA 535
|||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 565 TCTCGTATCCCAAAACGCAACCGTTTTAACGATCGGGGATTTAAGGAACGAAGCTTTAAA 624
Query 536 GAGGACAAAGAAGAACCCTTCAGCCACAGAAGCTGCCTTGGTCTCCAAGCAAGAACACGT 595
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 625 GAGGACGAAGAAGAACCCTTCAGCTACAGAAGCTGCCTTGGTCTCCAAGCAAGAACACGT 684
Query 596 CCACGGAAAACGTGTTTTCTACACGCGGACGGCGTTTGGTGGTGGAGAGTCGCGTCGGGA 655
|||||| ||||| |||||||||||||||||||||||||| ||||| |||||| | |||||
Sbjct 685 CCACGGGAAACGCGTTTTCTACACGCGGACGGCGTTTGGCGGTGGGGAGTCGAGGCGGGA 744
Query 656 GAACGAGGTGGTGATCGAGACATCTCTGTCGGGTCCTAGCGATCCAGAGATGTGGATCAC 715
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GAATGAGGTGGTGATCGAAACATCTCTGTCGGGTCCTAGCGATCCAGAGATGTGGATCAC 804
Query 716 GGTGGACGGTGTGCCGGCGATTAGGATCATGAATTTGAATTGGAGATTTAGAGGGAATGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GGTGGACGGTGTGCCGGCGATTAGGATCATGAATTTGAATTGGAGATTTAGAGGGAATGA 864
Query 776 GGTTTTGACTGTGAGTGATGGTGTTTCTTTGGAGATCTTTTGGGACGTTCATGATTGGCT 835
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GGTTGTGACTGTGAGTGATGGTGTTTCTTTGGAGATCTTTTGGGACGTTCATGATTGGCT 924
Query 836 GTTTGAAACATCCGGTTCGTCTAGTGGGTTGTTTGTTTTCAAGCCTAAAGCTGGATTCGA 895
||||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 925 GTTTGAACCCTCTGGTTCGTCTAGTGGGTTGTTTGTTTTCAAGCCTAAAGCTGGATTTGA 984
Query 896 ATCTAAAAGTCTTAGCTTTAATGGTGGCTATGGTGATGGTGAAGGTGAGGATCATGATGT 955
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ATCTAAATGTCTTAGTTTTAATGGTGGCTATGGTGATGGTGAAGGTGAGGATCATGATGT 1044
Query 956 GGAAGATGACGATTCGTCGCCCAAGTATTGTCATGTTCTATATGCTGTCAAAGAACTAGA 1015
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1045 GGAAGATGACGATTCGTCGCCCAAGTATTGTCATGTCCTATATGCCGTCAAAGAACTAGA 1104
Query 1016 ATTTCCATGTGGACCATGTCAAAAAATTTAGTTTCGTCAGCTAGTTAATTGTTTAGCATA 1075
|||||||||| | | |||||||| ||||| ||||| ||||||||| |||||||||
Sbjct 1105 ATTTCCATGT---C-A----AAAAAATT-AGTTTTGTCAGGTAGTTAATTATTTAGCATA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5