BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478714
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13310.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1170 0.0
> AT3G13310.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:4310608-4311441 REVERSE LENGTH=834
Length=834
Score = 1170 bits (633), Expect = 0.0
Identities = 747/800 (93%), Gaps = 16/800 (2%)
Strand=Plus/Plus
Query 1 ATATAAGCCTTTCTCAATCCCTCTCTTTCCTTTGTGATTCATATCCTACTTC-TCAT--A 57
||||||| |||||||| ||| |||||||||||||||||||||||||| |||| || | |
Sbjct 1 ATATAAGTCTTTCTCACTCCTTCTCTTTCCTTTGTGATTCATATCCTTCTTCTTC-TCCA 59
Query 58 CGAA-CT-TCTCTCTCTCTGCTTCTCTAAATTTTAACACTTTCTTCCGAATTTGCCCCTC 115
||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 60 AGAACCTCTCTCTCTTTCTGCTTCTCTATATTTTAACACTTTCTTCCGAATTTGCCCCTC 119
Query 116 AAGTTTTATTTTAATTGCTTAAATGGCCGGAACCCTAGTTTACTCCGCCGGGAGATTCTC 175
||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 120 AAGTTTTATTTTAATTGCTAAAATGGCTGGAACCCTAGTTAACTCCGCCGGGAGATTCTC 179
Query 176 ACCGGGAAATTGTCTTCTTCCCCAACCGAAAACAGCCAGATTCTACAGCGGAACCGCGAG 235
||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 180 ACCGGGAAATTGTATTCTTCCTCAACAGAGAACAGCCAGATTCTACAGCGGAACCGCGAG 239
Query 236 ATTTCCCACAGGAGCTGCGTCGTTTAAGGCTTCGGCTCAGACGCTTAACGCCGAGCCAGC 295
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 ATTTCCCACCGGAGCTCCGTCGTTTAAGGCTTCAGCTCAGACGCTTAACGCCGAGCCAGC 299
Query 296 TGTAACGGAATCCGTTCGTCGGAGAGTTTCTAGCCTCTACGAATTACTGAAAGTGAATGA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTAACGGAATCCGTTCGTCGGAGAGTTTCTAGCCTCTACGAATTACTGAAAGTGAATGA 359
Query 356 TACGGCGTCGTTGACGGAGATCAAGACGGCCTACCGGAGCTTAGCTAAAGTATATCATCC 415
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AACGGCGTCCTTGACGGAGATCAAGACGGCGTACCGGAGCTTAGCTAAAGTATATCATCC 419
Query 416 AGATGCGTCGGAATCGGACGGTCGAGATTTCATGGAGATTCACAAAGCTTACGCGACACT 475
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 AGATGCGTCGGAATCGGACGGTCGAGATTTTATGGAGATTCACAAAGCTTACGCGACACT 479
Query 476 GGCGGATCCGACTACAAGAGCGATCTACGACTCGACGCTTAGAGCACCTCGGAGACGGGT 535
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 480 TGCGGATCCGACTACAAGAGCGATTTACGACTCGACGCTTAGAGTACCACGGAGACGGGT 539
Query 536 ACACGCTGGAGCGATGGGTCGGTCGGGTCGGGTTTACACGACGACCCGGAGATGGGAGAC 595
|||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 540 ACACGCCGGAGCGATGGGTCGGTCGGGGCGGGTTTACGCTACGACCCGGAGATGGGAGAC 599
Query 596 GGATCAGTGTTGGTAATTTTAGCACTTCCGATGATTTTGCAGCAGCGAAAGGGCActttt 655
|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 600 GGATCAGTGTTGGTGATTTTAGG-CTTCCTATGATTTTGCAGCAGCGAAAGGGCACTTTT 658
Query 656 tgacttattttttcccctttcattacttttttttttttCCT-GTCATAACTTTGGAAAAT 714
||||||| ||| ||||||| ||||| |||||||||||||| |||||| |||||||||||
Sbjct 659 TGACTTACTTT--CCCCTTTGATTACGTTTTTTTTTTTCCTTGTCATATCTTTGGAAAAT 716
Query 715 TAAGGGGAAATTAAAAGTTTAATCCGCTCtttttttgtt-ttgttt-ttttAACTTAAGA 772
|||||||||||||| |||||||||||||||||||| || || ||| ||||||||||||
Sbjct 717 TAAGGGGAAATTAA--GTTTAATCCGCTCTTTTTTT-TTGTT-TTTCTTTTAACTTAAGC 772
Query 773 AGTTAACAATGTATAAAGAA 792
||||||||||||||||||||
Sbjct 773 AGTTAACAATGTATAAAGAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5