BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478718
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13350.1 | Symbols: | HMG (high mobility group) box protein... 1912 0.0
> AT3G13350.1 | Symbols: | HMG (high mobility group) box protein
with ARID/BRIGHT DNA-binding domain | chr3:4335475-4337986
REVERSE LENGTH=1388
Length=1388
Score = 1912 bits (1035), Expect = 0.0
Identities = 1207/1286 (94%), Gaps = 27/1286 (2%)
Strand=Plus/Plus
Query 3 GAAAAAT-AAAATCTTAAATACGGTCGTCTCAATTGCTCTTACCTTTACCAAGACGGCC- 60
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 110 GAAAAATAAAAATCTGAAATACGGTGGTCTCAATTGCTCTTACCTTTACCAAGACGGCCA 169
Query 61 --A-AAAGAAAAGATGTCGACCGATATTT---CACCCTACTCTCAAACTCACGTGGAGCC 114
| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 170 TAAGAAAAAAAAGATGTCGACCGATATTTCACCACCCTACTCTCAAACTCACGTGGAGCC 229
Query 115 CGTTAATGGTTATCCTTCAGACAACAAGCGATGCGACGATTCCTCTGCTCCTGCCAAATA 174
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 230 CGTTAATGGTTATCCTTCTGACAACAAGAGATGCGACGATTCCTCTGTTCCTGCCAAATA 289
Query 175 TGATGATCTTGTCCGTAACTCTTCTCTCTTCTGGGATAAGCTCCGAGCTGTT-CTCGGAC 233
|||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||
Sbjct 290 TGATGATCTTGTCCGTAACTCTGCTCTCTTCTGGGAAAAGCTCCGAGCT-TTCCTCGGAT 348
Query 234 TAACCAGCCAA-ACTTTGAAGGTTCCTACTGTGGGAGGGAACACTCTTGATCTGCATCGG 292
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 349 TAACCAG-CAAGACTTTGAAGGTTCCTACTGTGGGAGGAAACACTCTTGATCTGCATCGG 407
Query 293 CTTTTCATTGAGGTTACGTCTCGAGGTGGTATCGAAAGGGTGGTTAAGGATCGGAAATGG 352
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 408 CTTTTCATCGAGGTTACGTCTCGAGGTGGTATCGAAAGGGTGGTGAAGGATCGGAAATGG 467
Query 353 AAAGATGTGATTGGTGCATTCAGTTTTCCGACAACGATAACAAGTGCATCGTTTGTCTTG 412
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AAAGAAGTGATTGGTGCATTCAGTTTTCCGACAACGATAACAAGTGCATCGTTTGTCTTG 527
Query 413 AGGAAGTATTATCTCAAGTTTCTTTTTCAGCTGGAACATGTGTATTACCTTGAAAAACCA 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 AGGAAGTATTATCTCAAGTTTCTTTTTCAGCTGGAACATGTGTATTACCTTGAAAAACCG 587
Query 473 GTGTCTTCGA-TCCAATCAACAGATGAAGCAATGAAGAGCCTTGCCAATGAATCTCCAAA 531
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 588 GTGTCTTC-ACTCCAATCAACAGATGAAGCATTGAAGAGCCTTGCCAATGAATCTCCAAA 646
Query 532 TCCTGAGGAAGGTATTGATGAACCACAAGTTGGGTATGAGGTTCAAGGATTCATTGACGG 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 647 CCCTGAGGAAGGTATTGATGAACCACAAGTTGGGTATGAGGTTCAAGGATTCATTGATGG 706
Query 592 GAAGTTTGATAACGGCTATCTGGTGACGATGAAATTGGGTTCTCAAGAGCTGAAAGGTGT 651
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 GAAGTTTGATAGCGGCTATCTGGTGACGATGAAATTGGGTTCTCAAGAGCTGAAAGGTGT 766
Query 652 GATTTACCACATTCCTCAAACGCCAAGTCAGTCCCAACAAACCATGGAAACAGCTTCAGC 711
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 767 CCTTTACCACATTCCTCAAACGCCAAGTCAGTCTCAACAAACCATGGAAACACCTTCAGC 826
Query 712 CACTGTACCATCATCACAACGCCGGCATAGGAAGAAATCAAAGTTGGCTGTCGTCGATAC 771
|| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 827 CATTGTACAATCATCACAACGCCGGCATAGGAAGAAATCAAAGTTGGCTGTAGTCGATAC 886
Query 772 TCAGAAGCCCAAATGCCACAGGAGTGGCTACAACTTCTTTTTTGCTGAGCAGTACGCTAG 831
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 887 TCAAAAACCCAAATGCCACAGGAGTGGCTACAACTTCTTTTTTGCTGAGCAGTACGCGAG 946
Query 832 GCTTAAACCTGAGTACCATGGACAAGAACGAAGCATCACCAAGAAAATAGGACACATGTG 891
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 947 GCTTAAACCTGAGTACCATGGACAAGAACGATCCATCACTAAGAAAATAGGACACATGTG 1006
Query 892 GAGCAACCTCACTGAATCTGAGAAACAGGTTTATCAAGACAAAGGAGTTAAGGATGTGGA 951
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GAGCAATCTCACTGAATCTGAGAAACAGGTTTATCAAGACAAAGGAGTTAAGGATGTGGA 1066
Query 952 GAGATACAGAATTGAGATGTTGGAATATAAGTCTTCACATGAGTCAGGAGCTGCTGCTTC 1011
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1067 GAGATACAGAATTGAGATGTTGGAATATAAGTCTTCACATGAATCAGGAGCTACTGCTTC 1126
Query 1012 TACAGTGGCTCAGTAGCTTTTCTCCCTTTTGTTGTCTTATGTGTTTGTTGTAACATTGT- 1070
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 1127 TACAGTGGCTCAGTAGCTTTTCTCCCTTTTGTTGTCTTACGTGTCTGTTGTAACATTTTT 1186
Query 1071 CTTTTTCTCTATAAAACTTGttttttttttCTTTCTTT-TAGTAGTGATTTCTATGAGTT 1129
| ||||||||||| |||||||||| ||||||||||| | ||| || ||||||| ||||
Sbjct 1187 CCTTTTCTCTATAGAACTTGTTTTCTTTTTCTTTCTAAAT-GTAATGTTTTCTATCAGTT 1245
Query 1130 GCAGAATTTGCCATG-TTTATTATGGCTTTAGAGCTAGTGAGGAGGTTACTAACTGCGAA 1188
| || ||||| || | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1246 GGAGGATTTGTCA-GCTTTATTATGGCTTTAGAGCTAGTGAGGAGGTTACTAACTGTGAA 1304
Query 1189 CTAGTGTCTCTCTTGTTGTTTCCTTTTTAGCAAGTGCCATTTT-GTAGT-A----CGGGC 1242
|||||||||||||||||||||| |||| || |||||||||||| ||||| | | |||
Sbjct 1305 CTAGTGTCTCTCTTGTTGTTTC-TTTT-AGTAAGTGCCATTTTTGTAGTGAATTACAGGC 1362
Query 1243 ATAGCCATATATCCAGATCTTTCTTC 1268
||| ||||||||||||||||||||||
Sbjct 1363 ATATCCATATATCCAGATCTTTCTTC 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5