BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478721
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13400.1 | Symbols: sks13 | SKU5 similar 13 | chr3:4355138-... 3049 0.0
AT1G55560.1 | Symbols: sks14 | SKU5 similar 14 | chr1:20754321... 1624 0.0
AT3G13390.1 | Symbols: sks11 | SKU5 similar 11 | chr3:4351045-... 893 0.0
AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767... 826 0.0
> AT3G13400.1 | Symbols: sks13 | SKU5 similar 13 | chr3:4355138-4357428
FORWARD LENGTH=1898
Length=1898
Score = 3049 bits (1651), Expect = 0.0
Identities = 1737/1780 (98%), Gaps = 0/1780 (0%)
Strand=Plus/Plus
Query 1 aaaaaaataaaaaGAAGCAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 AAAAAAATAAAAAGAAGCAGAAAAGAGATAATGCAGGGTGGTAGGCTTTTGACGGTGTTG 149
Query 61 GTGTGCCTCGCCTCCACGGTGGCGATGGTGAACGCCGGTGACCCTTACTTCTACTACACG 120
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 150 GTGTGCCTCGCCTCCACGGTGGCGTTGGTGAGCGCCGGTGACCCTTACTTCTACTACACG 209
Query 121 TGGAACGTGACCTACGGAACCGTCGCGCCTCTGGGCATTCCTCAACAGGTGATTCTCATC 180
|||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 210 TGGAACGTAACCTACGGAACCGCCGCGCCTCTCGGAATTCCTCAACAGGTGATTCTCATC 269
Query 181 AACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTCCAACAACAATGTCGTCATCAAT 240
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 270 AACGGACAGTTCCCTGGTCCTAACCTAAACTCAACCTCCAACAACAATGTCGTCATCAAT 329
Query 241 GTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGTGGACTCCAGCACAGGAAG 389
Query 301 AACTCCTGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTC 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AACTCATGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGCAGGCACCAACTTC 449
Query 361 ACTTACCATTTCCAGCCTAAGGACCAGATTGGTAGCTACTTCTACTACCCATCCACCGCT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 450 ACTTACCATTTCCAGCCTAAGGACCAGATCGGTAGCTACTTCTACTACCCATCCACCGCT 509
Query 421 CTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCCGTCTCCTCATCCCA 569
Query 481 GTCCCTTACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACACCAAG 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 570 GTCCCATACGCTGACCCCGAAGACGACCGCACCATCCTCATCAACGACTGGTACGCCAAG 629
Query 541 AGCCACACCGCTCTCAAGAACTTCCTTGACAGTGGTCGCACTCTAGGATCCCCCGACGGT 600
||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 630 AGCCACACCGCCCTCAAGAACTTCCTTGACAGCGGACGTACTCTAGGATCCCCCGACGGT 689
Query 601 GTTCTCATCAACGGGAAATCCGGTAAAATCGGCGGAAACAACGCTCCTCTCTTCACAATG 660
||||||||||| |||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct 690 GTTCTCATCAATGGGAAATCTGGTAAACTAGGCGGAAACAACGCTCCTCTCTTCACCATG 749
Query 661 AAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTGGATTCAAATCCACTCTTAAC 809
Query 721 TTCAGGATCCAAGGCCACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAG 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TTCAGGATCCAAGGACACAAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAG 869
Query 781 AACGACTACGACTCTCTTGATGTCCATGTTGGACAGTGCTTCGCCGTGCTAGTGACCGCT 840
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 870 AACGACTACGACTCTCTTGATGTCCACGTTGGACAGTGCTTCGCCGTTCTAGTGACCGCT 929
Query 841 GACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTG 989
Query 901 AGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACGAGATCCCC 960
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 990 AGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAGCGATATCCCC 1049
Query 961 AAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTA 1109
Query 1021 ACCGCCAGTGCCGCTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATC 1080
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1110 ACCGCCAGTGCTGCTAGACCTAACCCCCAGGGATCTTACCATTACGGAAAGATCAACATC 1169
Query 1081 ACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGG 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 ACCCGTACCATCAAGCTCGCCAACACCAAGAATTTGGTGAATGGAAAGGTCAGGTTTGGA 1229
Query 1141 TTCAACGGTGTGTCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGT 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TTCAACGGTGTATCACACGTTGACACCGAGACTCCCTTGAAGCTCGCTGAGTACTTCGGC 1289
Query 1201 ATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ATGTCCGAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACCAGCAGCCAAGATCACA 1349
Query 1261 ACACTAACAGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCATC 1320
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1350 ACACTAACCGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCGTC 1409
Query 1321 TTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCGCT 1380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1410 TTCGAGAACCACGAGAAAAGCATGCAATCCTTCCATTTGGACGGTTACTCCTTCTTCGCT 1469
Query 1381 GTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAACTTGCTCGAT 1440
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1470 GTCGCTTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAACAACTACAACTTGCTCGAT 1529
Query 1441 GCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCTCTTGACA 1500
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1530 GCCGTTAGCAGACACACCGTGCAGGTATACCCCAAATCCTGGTCAGCCATTCTCTTGACA 1589
Query 1501 TTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TTCGACAATGCCGGTATGTGGAACATCAGATCAGAGAACTGGGAGAGAAGATACTTGGGC 1649
Query 1561 CAGCAATTGTACGTCAGTGTTCTGTCACCTGAAAAATCACTAAGAGACGAGTACAACATC 1620
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1650 CAGCAATTGTACGTCAGTGTTCTGTCCCCTGAAAAATCACTAAGAGACGAGTACAACATC 1709
Query 1621 CCACTCAACACTAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACT 1680
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 CCACTCAACACCAACCTTTGCGGCATCGTCAAGGGCTTGCCATTACCTACACCCTACACT 1769
Query 1681 ATTTAAACTCACTTCGACAAAGTTTTTTCTATTTATATGTAAAATTCTACTTTCCAAGTG 1740
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1770 ATTTAAACTCACTTCGACAAAGTTTTTTCAATTTATATGTAAAATTCTACTTTCCAAGTG 1829
Query 1741 AGTGTACTACGTGATTAATTAACCCTTTCCTAATTTCATT 1780
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1830 AGTGTATTACGTGATTAATTAACCCTTTCCTAATTTCATT 1869
> AT1G55560.1 | Symbols: sks14 | SKU5 similar 14 | chr1:20754321-20756656
REVERSE LENGTH=1932
Length=1932
Score = 1624 bits (879), Expect = 0.0
Identities = 1398/1648 (85%), Gaps = 38/1648 (2%)
Strand=Plus/Plus
Query 49 TTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGATGGTGAACGCCGGTGACCCTTAC 108
|||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 145 TTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCGATCGTGAACGCCGGTGATCCTTAC 204
Query 109 TTCTACTACACGTGGAACGTGACCTACGGAACCGTCGCGCCTCTGGGCATTCCTCAACAG 168
|||| | | || ||||||||||| |||||||| | | | ||||| || |||||||| ||
Sbjct 205 TTCTTCCATACATGGAACGTGACTTACGGAACTGCCTCACCTCTCGGTGTTCCTCAAAAG 264
Query 169 GTGATTCTCATCAACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTCCAACAACAAT 228
||||||||||||||||| || |||||||| |||||||| ||||| ||||| ||||||||
Sbjct 265 GTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACCTTAACTCAACCTCTAACAACAAC 324
Query 229 GTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGT-GGACT 287
||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||| |
Sbjct 325 GTCGTCATCAATGTCTTCAACCACCTAGACGAACCTTTCCTCTTGACCTGGAGTGGGA-T 383
Query 288 CCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGC 347
||||| |||||||||| |||||||||||||||| |||| || |||||||| ||||||||
Sbjct 384 TCAGCATAGGAAGAACTGCTGGCAAGATGGTGTGGCTGGAACTTCATGCCCCATCCCAGC 443
Query 348 AGGCAC-CAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGGTAGCTACTTCTACT 406
|| || ||||| |||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 444 TGG-ACAGAACTTTACTTACCATTTCCAACCTAAGGACCAGATTGGTTCCTACTTCTATT 502
Query 407 ACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCC 466
||||| |||| ||||||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 503 ACCCAACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTGGTGGTCTCCGTGTCAACAGCC 562
Query 467 GTCTCCTCA-TCCCGGTCCCTTACGCTGACCCCGAAGACGACCGCACCATCC-TCATCAA 524
||||||| | |||| || ||||| ||||| || ||||| ||| ||| ||| || ||
Sbjct 563 GTCTCCTAATTCCC-GTTCCTTATGCTGATCCTGAAGATGACTACACTGTCCTTC-TCGG 620
Query 525 CGACTGGTACACCAAG--AGCCACACCGCTCTCAAGAACTTCCTTGACAGTGGTCGCACT 582
|||||||||| | || ||||||| |||||||||||||||||||||||||| |||||
Sbjct 621 TGACTGGTACA-C-AGCTGGCCACACTGCTCTCAAGAACTTCCTTGACAGTGGACGCACC 678
Query 583 CTAGGATCCCCCGACGGTGTTCTCATCAACGGGAAA-TCCGGTAAA-ATCGGCGGAAACA 640
|| |||| || |||||||| | ||||| ||||| || || ||| | || ||||| |
Sbjct 679 CTTGGATTGCCTAACGGTGTTTTGATCAA-TGGAAAGTCTGG-AAAGGTTGGAGGAAAGA 736
Query 641 ACGCTCCTCTCTTCACAATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTG 700
||| ||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 737 ACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACAGGCTCTGCAATGTTG 796
Query 701 GATTCAAATCCACTCTTAACTTCAGGATCCAAG-GCCACAAGATGAAGCTTGTTGAGATG 759
| ||||| || || |||||||||||||| | || ||||||||||||||| || ||||||
Sbjct 797 GGTTCAAGTCTACACTTAACTTCAGGATTC-AGAACCACAAGATGAAGCTCGTGGAGATG 855
Query 760 GAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCATGTTGGACAGTGC 819
||||| ||||| ||| | ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 856 GAAGGATCCCATGTTATTCAGAACGACTATGACTCTCTCGATGTCCATGTTGGCCAGTGC 915
Query 820 TTCGCCGTGCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACT 879
|| | || || ||||| ||| |||||| || ||| | ||||||||||||||||| |||
Sbjct 916 TTTTCAGTTCTTGTGACTGCTAACCAAGCAGCTAAGGATTACTACATGGTTGCATCGACT 975
Query 880 AGGTTCCTCAAGAAGGAAG-TGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGT 938
|||||||||||||||| || ||||||| || |||||||| | || || |||||||||||
Sbjct 976 AGGTTCCTCAAGAAGG-AGTTGAGCACCGTGGGTGTGATCCGGTATGAGGGAAGCAACGT 1034
Query 939 TCAGGCTTCAAAC-GAGATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGT 997
||||||||| ||| ||| | ||||||||||| || || |||||||||||| | || ||||
Sbjct 1035 TCAGGCTTC-AACTGAGCTACCCAAGGCTCCTGTTGGATGGGCTTGGTCTTTGAACCAGT 1093
Query 998 TCAGATCCTTCAGATGGAA-CTTAACCGCCAGTGCCGCTAGACCTAACCCTCAAGGATCT 1056
|||| || ||||| ||||| ||| ||| | | || || || |||||||| ||||| ||
Sbjct 1094 TCAGGTCTTTCAGGTGGAACCTT-ACCTCTAACGCTGCAAGGCCTAACCCCCAAGGCTCA 1152
Query 1057 TACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAA-TTT 1115
||||||||||||||||||||||| ||||||| ||||||||| | |||| | || || | |
Sbjct 1153 TACCATTACGGAAAGATCAACATTACCCGTAGCATCAAGCTTGTCAACTCTAA-AAGTGT 1211
Query 1116 GG-TGAATGG-AAAGGTCAGGTTTGGGTTCAACGGTGTGTCACACGTTGACACCGAGACT 1173
|| || | || ||| ||| ||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1212 GGTTG-ACGGTAAA-GTCCGGTTTGGTTTCAATGGTGTATCACACGTTGACACCGAGACT 1269
Query 1174 CCCTTGAAGCTCGCTGAGTACTTCGGTATGTCCGAGAAGGTCTTCAAATACAACGTCATC 1233
|| |||||||| |||||||||||| ||||| |||||||| ||||| ||||| || |||
Sbjct 1270 CCTTTGAAGCTTGCTGAGTACTTCCAAATGTCAGAGAAGGTTTTCAAGTACAATGTGATC 1329
Query 1234 AAGGACGAACCAGCAGCCAAGATCACAACACTAACAGT-CGAGCCCAATGTCCTCAACAT 1292
|||||||| || |||||||| |||||| || | || || | | || ||||| ||||||||
Sbjct 1330 AAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTAC-AACCTAATGTTCTCAACAT 1388
Query 1293 CACTTTCCGTACCTTTGTCGAAG-TCATCTTCGAGAACCACGAGAAAAGCATGCAATC-T 1350
|||||||||||||||||| | || |||| ||||||||||||||||| | |||||| || |
Sbjct 1389 CACTTTCCGTACCTTTGTAG-AGATCATTTTCGAGAACCACGAGAAGACCATGCAGTCAT 1447
Query 1351 TTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCA 1410
|| |||||||| || ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1448 TT-CATTTGGATGGCTACTCCTTCTTCGCTGTCGCTTCTGAGCCAGGGAGGTGGACACCT 1506
Query 1411 GAGAAGAGAAAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAGGTGTAC 1470
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1507 GAAAAGAGAGAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAGTCTAC 1566
Query 1471 CCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGA 1530
||||| || |||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 1567 CCCAAGTCTTGGTCAGCTATCCTTTTGACATTCGACAACGCCGGTATGTGGAACATCAGG 1626
Query 1531 TCAGAGAACTGGGAGAG-AAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCACC 1589
|| ||||||| |||||| || |||| | ||| |||||||||| ||||||||||| |||||
Sbjct 1627 TCTGAGAACTTGGAGAGGAA-ATACCTAGGCGAGCAATTGTATGTCAGTGTTCTATCACC 1685
Query 1590 TGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACTAACCTTTGCGGCATCGT 1649
|| ||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 1686 GGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACAAACCTCTGTGGCATCGT 1745
Query 1650 CAAGGGCTTGCCATTACCTACACCCTAC 1677
||||||||||||||||||| ||| ||||
Sbjct 1746 CAAGGGCTTGCCATTACCTGCACACTAC 1773
> AT3G13390.1 | Symbols: sks11 | SKU5 similar 11 | chr3:4351045-4353393
REVERSE LENGTH=2125
Length=2125
Score = 893 bits (483), Expect = 0.0
Identities = 1226/1571 (78%), Gaps = 105/1571 (7%)
Strand=Plus/Plus
Query 103 CCTTACTTCTACTACACG--TGGAACGTGACCTACGGAACCGTCG-CGCCTCTGGGCATT 159
||||||||| | | |||| ||||||||||||||||||||||| | | ||||| || ||
Sbjct 180 CCTTACTTCCA-T-CACGTATGGAACGTGACCTACGGAACCGT-GTCTCCTCTCGGTGTT 236
Query 160 CCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGG-CCCTAACCTAAACTCGACCTC 218
|| ||||| || ||||||||||||||||| |||||||| ||| ||| | ||||| |||||
Sbjct 237 CCACAACAAGTCATTCTCATCAACGGACAATTCCCTGGTCCC-AACGTCAACTCAACCTC 295
Query 219 CAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTG 278
||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| | || ||
Sbjct 296 CAACAACAACGTCATCATTAATGTCTTCAACAACCTCGACGAACCTTTCCTCCTCACATG 355
Query 279 GAGT-GGACTCCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGACT--GGGACCTCA-- 333
|| | ||| |||| ||||||||||||| ||||||||| | | |||| ||| || |
Sbjct 356 GAATGGGA-TCCAACACAGGAAGAACTGTTGGCAAGAT-G-G-GACTCCAGGAACT-ATG 410
Query 334 TGCCCAATCCCA-G-CAGGCACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTG 391
|| || || || | | |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 411 TGTCCGAT--CATGCCCGGCACCAACTACACTTACCATTTCCAGCCTAAGGATCAGATCG 468
Query 392 GTAGCTACTTCTACTA-CCCATCCACCGCTCTCCACCGCTT-CGCCGGTGGTTTCGGTGG 449
| ||||| |||||||| |||| |||||| | ||||| || ||| ||||| ||||||||
Sbjct 469 GAAGCTATTTCTACTACCCCA-GCACCGCGATGCACCG-TTCCGCTGGTGGATTCGGTGG 526
Query 450 CCTCCGTGTCAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCCGAAGACGACCG 509
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 527 TCTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTATGCTGACCCAGAAGATGACTA 586
Query 510 CACCATCCTCATCAACGACTGGTACACCAAGAGCCACACCGCTCTC-AAGAACTTCCTTG 568
|||| || | ||| |||||||||||||||||||||||| | | ||||| |||||||
Sbjct 587 CACCGTCTTGATCGGTGACTGGTACACCAAGAGCCACACC-CAGTTGAAGAAATTCCTTG 645
Query 569 ACAGTGGTCGCACTCTAGGATCCC-CC-GACGGTGTTCTCATCAACGGGAAA-TCCGGTA 625
|||| ||||| ||||| || || || || ||| ||||||||||||| ||| ||||| |
Sbjct 646 ACAGCGGTCGTACTCTTGG--CCGTCCAGATGGTATTCTCATCAACGG-AAAGTCCGGGA 702
Query 626 AAATCGGCGGAAACAACGCTCCTCTCTTCACAATGAAGCCCGGAAAGACTTACAAG-TAC 684
|| || ||| | | || |||||||| || |||| || |||||||| |||| | |
Sbjct 703 AAGGCGATGGATCCGATGCACCTCTCTTTACCTTGAAACCTGGAAAGACCTACAGGGTT- 761
Query 685 AGGATCTGCAATGTTGGAT-TCAA-ATCCA-CTCTTAACTTCAGGATCCA-AGGCCACAA 740
|||||||| || || || | |||| | | | |||||||||| ||||| || | | ||||
Sbjct 762 AGGATCTGTAACGTGGG-TCTCAAGA-C-ATCTCTTAACTTTAGGATTCAGAATC-ACAA 817
Query 741 GATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGA 800
| |||||||||||||||||||||| || ||||||||||||||||| || |||||||| ||
Sbjct 818 GTTGAAGCTTGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGA 877
Query 801 TGTCCATGTTGGACAGTGCTT-CG---CCGTGCTAGTGACCGCTGACCAAGTGGCCAA-G 855
|| || ||||| ||||| || || || | || | |||||| | || | || || |
Sbjct 878 CGTTCACGTTGGTCAGTG-TTACGGAACCATCCT--T-ACCGCTAATCAGGAAGCTAAAG 933
Query 856 AACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGA-AGTGAGCACTGTTGGTGT 914
| |||||||||||||||||| |||||||| | ||| || | | | ||| |||| |
Sbjct 934 AT-TACTACATGGTTGCATCCTCTAGGTTCTTGAAGTCGGTTA-TAACCACCACTGGTCT 991
Query 915 GATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACG-AGAT-CCCCAAGGCTCCCGTC 972
| |||| || ||| |||| | || ||||| || || | |||| || ||| |||
Sbjct 992 TCTCCGCTATGAGGGAGGCAAAGGTCCCGCTTCTT-CGCAGCTACCCCCTGG-TCCAGTC 1049
Query 973 GGCTGGGCTTGGTCTCTC-AATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGC 1031
|||||||||||||| || || |||||| |||| ||||| |||||||| |||||||||||
Sbjct 1050 GGCTGGGCTTGGTC-CTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACCGCCAGTGC 1108
Query 1032 CGCTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCAT 1091
|| || ||||||||||| ||||||||||| |||||||||||||||||||| || |||||
Sbjct 1109 AGCCAGGCCTAACCCTCAGGGATCTTACCACTACGGAAAGATCAACATCACACGCACCAT 1168
Query 1092 CAAGCTCGCCAACAC-CAAG--AATTTGGT-GAATGGAAAGGTCAGGTTTGGGTTCAACG 1147
|||||| | ||||| |||| || ||| || ||||||| |||||| | || ||||
Sbjct 1169 CAAGCTTGTGAACACTCAAGGCAA---GGTCGA-TGGAAAGCTCAGGTACGCTTTGAACG 1224
Query 1148 GTGTGTCACACGTTGACACCGAGACTCCC-TTGAAGCTCGCTGAGTACTTCGGTAT-GTC 1205
| || || ||| |||| |||| || ||| |||||||| || |||||||| ||| | | |
Sbjct 1225 GAGTCTCGCACACTGACCCCGAAAC-CCCATTGAAGCTTGCGGAGTACTTTGGTGTTG-C 1282
Query 1206 CGAGAAGGTCTTCAAATACAACGTC-ATCAAGGACGAACC-AGC---AGC-CAAGATCAC 1259
||| ||||| ||||| ||| || || |||| || |||| | | || ||| ||||
Sbjct 1283 CGACAAGGTTTTCAAGTACGAC-TCCATCACTGAT-AACCCAACCCCAGAACAA-ATCA- 1338
Query 1260 A-A-CA-CTAACAGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGT 1316
| | || | || | ||| ||| ||||| || ||||||||| ||| ||||| |||| ||
Sbjct 1339 AGAGCATC-AAGA-TCGTGCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGT 1396
Query 1317 CATCTTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTT 1376
| || |||||||||||||| || | || || | || ||||||||||||||||||||
Sbjct 1397 GGTGTTTGAGAACCACGAGAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTT 1456
Query 1377 CGCTGTCGCT-TCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAACTTGC 1435
|| |||||| || |||||||| | ||||| |||||||||||||| ||||||||| |||
Sbjct 1457 TGCCGTCGCTGTC-GAGCCAGGGACTTGGACCCCAGAGAAGAGAAAAAACTACAACCTGC 1515
Query 1436 TCGATGCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCT-- 1493
| || || || ||||||||||| || || || ||||| |||| ||| |||| || ||
Sbjct 1516 TGGACGCAGTGAGCAGACACACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAAT-CTTG 1574
Query 1494 CTTGACATTCGACAA-TGCCGGTATGTGGAACAT-CAGATCAGAGAACTGGGAGAGAAGA 1551
|| ||||||||||| || || ||||||||| | | |||| || |||| |||||| |
Sbjct 1575 CTC-ACATTCGACAACTGT-GGAATGTGGAACGTTC-GATCTGAAAACTCCGAGAGACGC 1631
Query 1552 TACTTGGGCCAGCAA-TTGTACGTC-AGTGTTCT-GTCACCTGAAAAATCACTAAGAGAC 1608
||||| || ||||| || |||| | ||||| || |||||| || |||||||| |||||
Sbjct 1632 TACTTAGGACAGCAGCTT-TACG-CGAGTGT-CTTGTCACCAGAGAAATCACTGAGAGAT 1688
Query 1609 GAGTACAACAT 1619
|| ||||||||
Sbjct 1689 GAATACAACAT 1699
> AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767-20760076
FORWARD LENGTH=2088
Length=2088
Score = 826 bits (447), Expect = 0.0
Identities = 1212/1570 (77%), Gaps = 97/1570 (6%)
Strand=Plus/Plus
Query 100 GACCCTTACTTCTACTACACGTGGAACGTGACCTACGGAACCGTC-GCGCCTCTGGGCAT 158
|||||||||||| || || |||||||||||| |||||||||| | | ||||| ||| |
Sbjct 191 GACCCTTACTTCCACCACGTGTGGAACGTGACGTACGGAACCG-CATCTCCTCTCGGCGT 249
Query 159 TCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTC 218
||| ||||| || || ||||||||||| || |||||||| |||||| | |||||||| ||
Sbjct 250 TCCACAACAAGTCATCCTCATCAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTC 309
Query 219 CAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTG 278
|||||||| ||| || | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 310 TAACAACAACGTCATCGTTAATGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTG 369
Query 279 GAGT-GGACTCCAGCACAGGAAGAACTCCTGGCAAGATGGTGT-GACTGGGACC-TCATG 335
| | ||| |||||||||||||||||| |||||||||||| | |||| || | ||
Sbjct 370 G-GCCGGAATCCAGCACAGGAAGAACTGCTGGCAAGATGGAACAG-CTGGAACAATG-TG 426
Query 336 CCCAATCCCAGCAGG-CACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGGTA 394
|| ||||| | || || ||||| || |||||||||||||| ||||| || || ||||
Sbjct 427 TCCGATCCCTCCGGGTCAG-AACTTTACATACCATTTCCAGCCAAAGGATCAAATCGGTA 485
Query 395 GCTACTTCTACTACCC-ATCCACCGCTC-TCCACCGCTTC-GCCGGTGG-TTTCGGTGGC 450
|||||||||||||||| | |||| || | | || || | | || ||||| ||| ||||||
Sbjct 486 GCTACTTCTACTACCCGA-CCACAGC-CATGCATCG-TGCCGCTGGTGGCTTT-GGTGGC 541
Query 451 CTCCGTGTCAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCCGAAGACGACCGC 510
|| ||||| ||||||||||| | |||||||| |||||||||||||| ||||| ||| |
Sbjct 542 CTTCGTGTGAACAGCCGTCTATTGATCCCGGTTCCTTACGCTGACCCTGAAGATGACTAC 601
Query 511 ACCATCCTCATCAACGACTGGTACACCAAGAGCCACAC-C-GCTCTCAAGAACTTCCTTG 568
|| ||||| |||||||||||||||||||| ||||| || | |||| ||||| ||||| |
Sbjct 602 ACTATCCTTATCAACGACTGGTACACCAAAAGCCATACTCAGCTC--AAGAAGTTCCTCG 659
Query 569 ACAGTGGTCGCACTCTAGGATCCCCC-GACGGTGTTCTCATCAACGGGAAATCCGGTAAA 627
|||||||||| ||| | || || || || || ||||||||||||| |||||||| |||
Sbjct 660 ACAGTGGTCGTACTATTGG-TCGTCCTGATGGCATTCTCATCAACGGTAAATCCGGGAAA 718
Query 628 A-TC--GGCGGAAACAA-CGCTCCTCTCTTCACAATGAAGCCCGG-AAAGACTTACA-AG 681
| | ||| |||| | ||| | | ||||| ||||||| || ||| || |||| ||
Sbjct 719 ACTGATGGCTCTGACAAAC-CTC-T-T-TTCACTTTGAAGCCAGGGAAA-ACATACAGAG 773
Query 682 TACAGGATCTGCAATGTTGGAT-TCAAATCCA-CTCTTAACTTCAGGATCCA-AGGCCAC 738
| | | ||||| || || || | |||| | | |||||||||||||||| || | ||||
Sbjct 774 TTC-GTATCTGTAACGTGGG-TCTCAAGGC-ATCTCTTAACTTCAGGATTCAGAA-CCAC 829
Query 739 AAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTT 798
|| ||||||||||| |||||||||||||| || ||||| || |||||||| ||||| |||
Sbjct 830 AAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAACGACTATGACTCGCTT 889
Query 799 GATGTCCATGTTGGACAGTGCTTCGCCGTGCTAGTGACCGCTGACCAAGTGGCC-AA-GA 856
||||||||||| || ||||| || | || | || || || ||||||| || || ||
Sbjct 890 GATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGACCAAGAA-CCTAAAGA 948
Query 857 ACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCA-CTGTTGG-TGT 914
||||||||| |||| ||||| |||||| | ||||| ||| || | || | |
Sbjct 949 T-TACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGA-CAACCACAGGAT-T 1005
Query 915 GATGAGCTACGAAGGAAGCAACGTTCA-G-G-CTTCAAACGAGATCCCCAAGGCTCCCGT 971
| | ||||||| ||| |||| | || | | |||| | || | || ||| |||||
Sbjct 1006 GCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTTCT--C-AGCTACCTGCGGCCCCCGT 1062
Query 972 CGGCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGC 1031
|| |||||||||||| | ||||||| | |||| ||||| |||||||| || ||||| ||
Sbjct 1063 TGGTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACAGCCAGCGC 1122
Query 1032 CGCTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCAT 1091
||||||||||||||| ||||| || ||||| |||||||| || || ||||| || |||||
Sbjct 1123 CGCTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACTCGCACCAT 1182
Query 1092 CAAGCTCGCCAACAC-CAAG-AATTTGGT-GAATGGAAAGGTCAGGTTTGGGTTCAACGG 1148
|||||||| ||||| || | || ||| || ||| ||| | |||| | ||| | |||
Sbjct 1183 CAAGCTCGTGAACACTCAGGGAAA--GGTCGA-TGGCAAGCTTAGGTACGCGTTGAGCGG 1239
Query 1149 TGTGTCACACGTTGACACC-GAGACTCC-CTTGAAGCTCGCTGAGTACTTCGGTATGTCC 1206
|| || ||| ||| || ||||| || || ||||| |||||||||||||| | | |
Sbjct 1240 GGTCTCCCACACCGAC-CCTGAGACACCTCTC-AAGCTTGCTGAGTACTTCGGCGT-TGC 1296
Query 1207 -GAGAAGGTCTTCAAATACAACGTCATCAAGGACGAACC-AGCAGCC--A--AGATCAC- 1259
|| ||||| ||||| ||| || |||| |||| |||| | | || | ||||||
Sbjct 1297 TGATAAGGTTTTCAAGTACGACACCATCTCGGAC-AACCCAA-ATCCTGATCAGATCAAG 1354
Query 1260 AACA-CTAACAGTCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCA 1318
|||| | || | |||| |||||||| || ||||||||| ||| ||||| | ||||||
Sbjct 1355 AACATC-AAGA-TCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCG 1412
Query 1319 TCTTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCG 1378
| |||||||||||||||| || | || |||| ||||||||||| || ||||||||||
Sbjct 1413 TGTTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCG 1472
Query 1379 CTGTCGC--TTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAAC-TTGC 1435
|||| || || |||||||| | |||||||||||||||||| |||||||||||| || |
Sbjct 1473 CTGTAGCGGTT--GAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTT-C 1529
Query 1436 TCGATGCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCT-- 1493
| ||||| || ||| ||||||| || ||||| |||||||| | ||| | || || ||
Sbjct 1530 TAGATGCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAAT-CTTG 1588
Query 1494 CTTGACATTCGACAA-TGCCGGTATGTGGAACATCAGATCAGAGAACTGG-GAGAGAAGA 1551
|| ||||||||||| || || ||||||||||| || || |||||| | || ||| |
Sbjct 1589 CTC-ACATTCGACAACTGT-GGAATGTGGAACATTAGGTCGGAGAAC-GCAGAAAGACGC 1645
Query 1552 TACTTGGGCCAGCAATTGTACGTCA-GTGTTCT-GTCACCTGAAAAATCACTAAGAGACG 1609
|||||||| |||||| |||||| || | || || |||||| |||||||| || | ||||
Sbjct 1646 TACTTGGGACAGCAACTGTACG-CAAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACG 1703
Query 1610 AGTACAACAT 1619
| ||||||||
Sbjct 1704 AATACAACAT 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88051755930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5