BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478722
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2028 0.0
AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 313 3e-84
> AT3G13410.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G55546.1);
Has 49 Blast hits to 49 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
chr3:4361857-4364262 REVERSE LENGTH=1402
Length=1402
Score = 2028 bits (1098), Expect = 0.0
Identities = 1198/1247 (96%), Gaps = 4/1247 (0%)
Strand=Plus/Plus
Query 2 ATTGTTCCGACGACGAAGATGATGAAGATTCAAATTGGTGCGCTGGCGTTATTGGTGGCT 61
|||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||| |
Sbjct 127 ATTGTTTCGACGACGAAGATGAAGAAGATTCAAATTGGTGCGGTGGCGCTATTGGTGTTT 186
Query 62 CTATCTGTGGCCTCTCTCTGTGAAATTGGATTGGCTTCTCCAAACACCGTTCCTGCTTTC 121
||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct 187 CTATCTGTGGCCTCTCTCTTTGAAATCGGATTGGCTTCTCCGAACACAGTTCCTGCTTTC 246
Query 122 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGTTGTAAATTATCAG 181
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 247 CTCTGGTCTCCGCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGCTGTAAATTATCAG 306
Query 182 GTCATGTCTGCAAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 GTCATGTCTGCAAAGGATCTAGTTGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTT 366
Query 242 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGAAGA 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 CTGTGCTCAGAGAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGCAGA 426
Query 302 GAGTTACTGTCTTCTGATGTTTCTTCTAAAAGGAACTCGGATTCTGCCCTTGTTAACACA 361
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 427 GAGTTACTGTCTTCTGATGTTTCTTCAAAAAGGAACTCAGATCCTGCCCTTGTTAACACA 486
Query 362 TTGAGTAATCTGTTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCGCCA 421
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 487 TTGAATAATCTATTTACAGCTTCCAACTTCTCATTGGCATTCCCATATATTGCTGCTCCA 546
Query 422 GAGGAAGAAAGGATGGAGAATTTGTTGCTATCAGGACTTAAAGAAGCTTGCCCCAACAAT 481
|||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 547 GAGGAAGAAAGGATGGAGAATTTGTTACTTTCAGGGCTTAAAGAAGCTTGTCCCAACAAT 606
Query 482 GTTGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 541
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GTAGGAGTCAGCAATATCGTGTTCTCAGATTCGTGCTTTGTTGAGGATGGAACAATTCAG 666
Query 542 AAACTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 601
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAACTTTCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAACAAGGAAA 726
Query 602 GAAGGAGAAACTGATTTGGTTGTGCTTTGTTCCGAGGGTTCTGAATCAAAAAGTCAAGCT 661
|||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 727 GAAGGAGAAACTGACTTGGTTGTGCTCTGTTCCGAGGGTTCTGAATCGAATAGTCAAGCT 786
Query 662 GGACAGTCACACTCAGAGCGTGAAAGCATCTTGGAACTTGTTAGTTCTGTAGAACAATCC 721
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 787 GGACAGTCACATTCAGAGCGTGAAAGCTTCTTGGAACTTGTTAGTTCTGTAGAACAATCC 846
Query 722 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGCAGTAAATATACAGCTCTTTATGTTTCTGATCCTTATTGGTACACATCTTACAAAACT 906
Query 782 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGCACTCCTGAAGTTGCAACTGCC 841
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |
Sbjct 907 CTCCAAAGGTTTCTAGCTGAAACTGCTAAAGGAAACAGTACTCCTGAAATTGCTACTGGC 966
Query 842 TGTGATGAACTCTGCAAATTTAAGTCATCACTCTTGGAGGGTATACTAGTGGGAATCGTT 901
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 967 TGTGATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGGAATCGTT 1026
Query 902 TTTCTTCTCATCTTGATCAGTGGACTTTGTTGTATGGCGGGTATTGATACACCGACTAGA 961
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1027 TTTCTTCTCATCTTGATCAGTGGACTTTGCTGTATGGCGGGTATCGATACACCGACTAGA 1086
Query 962 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCCCACCTTTTGCT 1021
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1087 TTCGAGACTCCTCAAGATTCTTAAGCTGTTGACCTTAAGAGCCATCCCC-ACCTTTTGCT 1145
Query 1022 TTGTTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1081
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TTGCTTTTGACGAGTCTTTTCTTGTGCATAGTGCGCATTGTGGAAGGTACTTCAATGTCG 1205
Query 1082 ATTTGTTACATTATTACTTCAAAAACAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1141
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1206 ATTTGTTACATTATTACTTCAAAA-CAAAATCTGCATATGCCATAAAATCCCCTTGTATC 1264
Query 1142 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 ATTTATTCATCTTGTTTGTGAGTCTTTCTTAAACGTCATAAATTAATAATGGAGAACGAG 1324
Query 1202 TaaaaaaaTACAGAGA--TACACTGGAGAACGGATTACATTGTTTTT 1246
||||||| | ||| | ||||||||||||||||||||||| |||||
Sbjct 1325 TAAAAAACCAGAGATACATACACTGGAGAACGGATTACATTCTTTTT 1371
> AT1G55546.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13410.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:20743828-20745109 FORWARD LENGTH=396
Length=396
Score = 313 bits (169), Expect = 3e-84
Identities = 258/299 (86%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 74 TCTCTCTGT-GAAATTGGATTGGCTTCTCCAAACACCGTTCCTGCTTTCCTCTGGTCTCC 132
|||||| || || ||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct 100 TCTCTC-GTGGATTTTGGATTAGCTTCACCTTCCACAGTTCCTGCTTTCCTCTGGTCTCC 158
Query 133 GCATCTCCAGTCTGCTAATGGTGAATTGGATGAGGTTGTAAATTATCAGGTCATGTCTGC 192
||||||||||| ||||||||||||| ||||| | ||||||||| |||||||||||
Sbjct 159 GCATCTCCAGTATGCTAATGGTGAAACGGATG---T---AAATTATCAAGTCATGTCTGC 212
Query 193 AAAGGATCTAGTAGGTTCTGTTTTCACTCAAGGAGGTTGGTCAAACTTTCTGTGCTCAGA 252
|||||||||||||| ||||||||||||| |||||||||||| || ||||||||||| ||
Sbjct 213 AAAGGATCTAGTAGACTCTGTTTTCACTCTAGGAGGTTGGTCTAATTTTCTGTGCTCGGA 272
Query 253 GAAGAAGCTTGAGCAACCTGTTGATGTTGCACTTGTGTTCATAGGAAGAGAGTTACTGTC 312
||| || ||| |||||||||||||||||||||| |||||||| || ||||||||| ||||
Sbjct 273 GAAAAAACTTCAGCAACCTGTTGATGTTGCACTCGTGTTCATTGGCAGAGAGTTATTGTC 332
Query 313 TTCTGATGTTTCTTCTAAA--AGGAACTCGGATTCTGCCCTTGTTAACACATTGA-GTA 368
||| ||||||||||| ||| || ||||||||| ||| ||||||||||||||||| |||
Sbjct 333 TTCAGATGTTTCTTC-AAATCAG-AACTCGGATCCTGTCCTTGTTAACACATTGAAGTA 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5