BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478723
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1999 0.0
> AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G55535.1);
Has 66 Blast hits to 66 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4364527-4366791
FORWARD LENGTH=1647
Length=1647
Score = 1999 bits (1082), Expect = 0.0
Identities = 1473/1646 (89%), Gaps = 89/1646 (5%)
Strand=Plus/Plus
Query 1 CTTCTGCAACGCGATCCCGCCAAAGAAACTC-TTA-----TCCCTCACGAAAATTCTCAA 54
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 1 CTTCTGCAACGCGATCCCGCCAAAGACACTCTTTACTTTCTCCCTCACGAAAATTCTCAA 60
Query 55 ATCGTCGTTCTCTCTCGCTTCACCGGTTTCGTTAGCCGGGAAATTGCAATTTAAG-ATCA 113
||||||||||||||| | ||||||| ||||||| ||||| |||||||||||| || ||||
Sbjct 61 ATCGTCGTTCTCTCTTGATTCACCGATTTCGTTCGCCGGAAAATTGCAATTT-AGCATCA 119
Query 114 GAATCGTCGAGCCATTTTGTCTAAGGAAGAG-ACATTGGAGTAACAAGTAACGAGGGCAG 172
|||||||||||||||||||| | | ||| || ||||| ||||||||||||||| | ||
Sbjct 120 GAATCGTCGAGCCATTTTGTATTATGAA-AGTCCATTGAAGTAACAAGTAACGA--G-AG 175
Query 173 CTAG-GAGGTTGAGATTTTACGATGCTTTGTGTTTCTTTACGAAATAGAATTCACAATTG 231
|| | ||||||||||||||||||||||||||||||| ||||||||| |||| || |||||
Sbjct 176 CT-GCGAGGTTGAGATTTTACGATGCTTTGTGTTTCGTTACGAAATCGAATACATAATTG 234
Query 232 GCTTCGCGACTACGTCAGGCTCCAATCTGTCGTCGTGATTCTTATCTACGCTCAGATAGG 291
||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 235 GCTTCGCGACTACGTTAGGCTCCAATCTGTCGTTTTGATTCTTATCTATGCTCAGATAGG 294
Query 292 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCTTGCTGATAAATTTGGC 351
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 295 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCGTGCTGATAAATTTGGC 354
Query 352 GATTGCGTTATTTGGGTTAGTGGCAATCGAGAGTAATAGCCAGAGTCTTGGCAGAACCTA 411
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 355 GATTGCGTTATTTGGGTTAGTAGCAATCGAGAGTAATAGCCAAAGTCTTGGCAGAACCTA 414
Query 412 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATACTCTTCTCCAA 471
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 415 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATTCTCTTCTCCAA 474
Query 472 CGAGATTTGGAACATTTCTTCTGAGATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 531
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 475 AGAGATTTGGAACATTTCATCTGATATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 534
Query 532 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 594
Query 592 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTTCGTTTCCCCGTCAACCTGATTC 651
||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||
Sbjct 595 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTCCATTTCCCCGTCAATCAGATTC 654
Query 652 AGATTTACGAAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 711
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGATTTACGGAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 714
Query 712 AGAATTACGGAATAGCTTCTTACAGCCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 771
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 AGAATTACGAAATAGCTTCTTACAGGCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 774
Query 772 TGAAATCTTGGAAGATTCTATTGACCAACCGGCCTCCTACACTCCTCTGTTTGATGGCGG 831
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 775 CGAAATCTTGGAAGATTCTATTGACGAACCTGCCTCCTACACTCCTCTGTTAGATGGCGG 834
Query 832 CCAAAGCAATATCACTTCGCCCAATGCAAAACAGGTCTTTTTATGTTCTACCTATTCTTC 891
|| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 835 CCTAAGCAATATCACTTTGCCCAATGCAACACAGGTCTTTTTAT-TTCTACCTATTCTTC 893
Query 892 TCTTAAGTTGTTTATGTGCTCATTGTAGTTGAGGTTTT-ATACTTG-TTTGTCTATGTTT 949
||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 894 TCTTAAGTTGTTTGTGTACTCATTGTAGTTGAGGTTTTTATACTTGGTTTGTCTATGGTT 953
Query 950 TCTTCCAATTGGCTTTCCAGATGCTTGGTTTTCTTAGGACCTCTCTTTTGAAACTGTAGT 1009
| | |||||||| ||||||||||||| ||||| |||||| ||||||||||||||| |
Sbjct 954 T-TACCAATTGGGTTTCCAGATGCTTC-TTTTC---GGACCTTTCTTTTGAAACTGTA-T 1007
Query 1010 TGATGCAAGATAATGAGAATTGGAT-GAACTATCTAGA-CAAAACAACTATGCTTCTTAG 1067
| ||| ||| |||||||||||| |||||||||||| || |||| |||||| ||||
Sbjct 1008 -G---CAATATAGTGAGAATTGGATTGAACTATCTAGATCACC-CAACCATGCTTTTTAG 1062
Query 1068 CTCTTTGCCACTCTAGGTTAGATGCAACATGTTTCTCA--AA-AA-CAAA--C-A--T-- 1116
||||||||||||||||||||| || ||| ||||||||| || || |||| | | |
Sbjct 1063 CTCTTTGCCACTCTAGGTTAGGTGAAACTTGTTTCTCACTAACAAACAAAGGCCACATAG 1122
Query 1117 -----------CATCATAGTATGCTGCCTCTCTTGTTTCA-TCACTCCTCTAAAACTTAC 1164
|||||||||||||||| | |||||| ||| | |||||||||||||||||
Sbjct 1123 TATTGATATTACATCATAGTATGCTGCTTTTCTTGTCTCAGT-ACTCCTCTAAAACTTAC 1181
Query 1165 ACAGCCATAGCAAGGTGG-TTTTCATCCTTTTGTAGGTGATTAAGCATCATTCAGCTGGA 1223
|||| ||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1182 ACAGACATAGCAAG-TGGGTTTTCAACCTTTTGTAGGTGATTAAGCACCATTCAGCTGGA 1240
Query 1224 GACATTTACAAAGGATCCCCATTGTCTGCTGCAGAAGCCTCTCGGAATAAGTCTCCTCTA 1283
||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 1241 GACATTTACAAAGGATCCCAATCATCTGCTGCAGAAGCCTCTCGAAAGAAGTCTCCTCTA 1300
Query 1284 TCCAGATCCTTGGAAGCACTTGATTCTAGTCTCTGTTGATAACTTGATATACAACATCTA 1343
||||||||||| ||||||||| ||||||||||||||||||| || | || ||||
Sbjct 1301 TCCAGATCCTTAGAAGCACTTCATTCTAGTCTCTGTTGATA----GA-A--CA---TCTA 1350
Query 1344 ATGATTGGGGCCGTAATTCTG--TCACTTTTGCAGGAAGATAGCTTTTGACTCGAGCAAC 1401
||||||| || ||| ||| |||||||||||||||||||||||||| | ||||||||
Sbjct 1351 ATGATTGTGGACGT--TTCCAACTCACTTTTGCAGGAAGATAGCTTTTGTCACGAGCAAC 1408
Query 1402 TTCATTCAACAATTCTAAGGCGATTCTTTGTTTTCAATTTGAAGA-TCCAGATCCTAGAT 1460
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1409 TTCATTCAACAATTCTAAGGCCATTCTTTGTTTTCAATTTGAAGAATCCAGATCCGAGAT 1468
Query 1461 TTACATAGTGGATGACAAGAAAGAACCATGCCT----C-TCATT--TT--ACTCGAAACT 1511
||||||||||||| ||||| |||||| |||||| | ||||| || ||||| ||||
Sbjct 1469 TTACATAGTGGATAACAAGCAAGAACAATGCCTTTATCATCATTCATTTTACTCGGAACT 1528
Query 1512 GTATAGA---G-----ATTGGGACTAGGAATGTACATTAGCATTCTTTTCTGTACATGAA 1563
||||||| | ||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1529 GTATAGAATTGGGGTTATTTGGACTACGAATGTACATTAGCATTCTTTTCTGTACATGAA 1588
Query 1564 AAATAGGTGAATTGGAGGGTTAGTAT 1589
|||||||||||| |||||||||||||
Sbjct 1589 AAATAGGTGAATCGGAGGGTTAGTAT 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78463451835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5