BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478723 Length=1589 Score E Sequences producing significant alignments: (Bits) Value AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1999 0.0 > AT3G13420.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55535.1); Has 66 Blast hits to 66 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4364527-4366791 FORWARD LENGTH=1647 Length=1647 Score = 1999 bits (1082), Expect = 0.0 Identities = 1473/1646 (89%), Gaps = 89/1646 (5%) Strand=Plus/Plus Query 1 CTTCTGCAACGCGATCCCGCCAAAGAAACTC-TTA-----TCCCTCACGAAAATTCTCAA 54 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 1 CTTCTGCAACGCGATCCCGCCAAAGACACTCTTTACTTTCTCCCTCACGAAAATTCTCAA 60 Query 55 ATCGTCGTTCTCTCTCGCTTCACCGGTTTCGTTAGCCGGGAAATTGCAATTTAAG-ATCA 113 ||||||||||||||| | ||||||| ||||||| ||||| |||||||||||| || |||| Sbjct 61 ATCGTCGTTCTCTCTTGATTCACCGATTTCGTTCGCCGGAAAATTGCAATTT-AGCATCA 119 Query 114 GAATCGTCGAGCCATTTTGTCTAAGGAAGAG-ACATTGGAGTAACAAGTAACGAGGGCAG 172 |||||||||||||||||||| | | ||| || ||||| ||||||||||||||| | || Sbjct 120 GAATCGTCGAGCCATTTTGTATTATGAA-AGTCCATTGAAGTAACAAGTAACGA--G-AG 175 Query 173 CTAG-GAGGTTGAGATTTTACGATGCTTTGTGTTTCTTTACGAAATAGAATTCACAATTG 231 || | ||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| Sbjct 176 CT-GCGAGGTTGAGATTTTACGATGCTTTGTGTTTCGTTACGAAATCGAATACATAATTG 234 Query 232 GCTTCGCGACTACGTCAGGCTCCAATCTGTCGTCGTGATTCTTATCTACGCTCAGATAGG 291 ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 235 GCTTCGCGACTACGTTAGGCTCCAATCTGTCGTTTTGATTCTTATCTATGCTCAGATAGG 294 Query 292 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCTTGCTGATAAATTTGGC 351 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 295 GTGCGCGTTGATCGGTTCACTAGGGGCATTGTACAATGGAGTCGTGCTGATAAATTTGGC 354 Query 352 GATTGCGTTATTTGGGTTAGTGGCAATCGAGAGTAATAGCCAGAGTCTTGGCAGAACCTA 411 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 355 GATTGCGTTATTTGGGTTAGTAGCAATCGAGAGTAATAGCCAAAGTCTTGGCAGAACCTA 414 Query 412 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATACTCTTCTCCAA 471 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 415 TGCGGTTCTTCTTTTCTGCGCCATTCTTCTTGATGTCTCATGGTTCATTCTCTTCTCCAA 474 Query 472 CGAGATTTGGAACATTTCTTCTGAGATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 531 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 475 AGAGATTTGGAACATTTCATCTGATATGTATCAAGTCTTTTACATCTTCTCTGTGAAACT 534 Query 532 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 CACCCTGGCTATGGAAATTGCTGGGTTCGTTGTGAGGCTATCGTCCTCTCTGTTATGGTT 594 Query 592 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTTCGTTTCCCCGTCAACCTGATTC 651 ||||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||| Sbjct 595 TCAGATCTATAGGCTGGGAGCTTCTATTATAGACTCTCCATTTCCCCGTCAATCAGATTC 654 Query 652 AGATTTACGAAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 711 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 AGATTTACGGAATAGCTTCTTAGAACCTCCTCTTTTAGCTAGGCAACGTTCACGTGATCC 714 Query 712 AGAATTACGGAATAGCTTCTTACAGCCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 771 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 715 AGAATTACGAAATAGCTTCTTACAGGCTCCTGCTATAGCTAAGCAACGTTCACGTTCTGA 774 Query 772 TGAAATCTTGGAAGATTCTATTGACCAACCGGCCTCCTACACTCCTCTGTTTGATGGCGG 831 |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| Sbjct 775 CGAAATCTTGGAAGATTCTATTGACGAACCTGCCTCCTACACTCCTCTGTTAGATGGCGG 834 Query 832 CCAAAGCAATATCACTTCGCCCAATGCAAAACAGGTCTTTTTATGTTCTACCTATTCTTC 891 || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 835 CCTAAGCAATATCACTTTGCCCAATGCAACACAGGTCTTTTTAT-TTCTACCTATTCTTC 893 Query 892 TCTTAAGTTGTTTATGTGCTCATTGTAGTTGAGGTTTT-ATACTTG-TTTGTCTATGTTT 949 ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||||||| || Sbjct 894 TCTTAAGTTGTTTGTGTACTCATTGTAGTTGAGGTTTTTATACTTGGTTTGTCTATGGTT 953 Query 950 TCTTCCAATTGGCTTTCCAGATGCTTGGTTTTCTTAGGACCTCTCTTTTGAAACTGTAGT 1009 | | |||||||| ||||||||||||| ||||| |||||| ||||||||||||||| | Sbjct 954 T-TACCAATTGGGTTTCCAGATGCTTC-TTTTC---GGACCTTTCTTTTGAAACTGTA-T 1007 Query 1010 TGATGCAAGATAATGAGAATTGGAT-GAACTATCTAGA-CAAAACAACTATGCTTCTTAG 1067 | ||| ||| |||||||||||| |||||||||||| || |||| |||||| |||| Sbjct 1008 -G---CAATATAGTGAGAATTGGATTGAACTATCTAGATCACC-CAACCATGCTTTTTAG 1062 Query 1068 CTCTTTGCCACTCTAGGTTAGATGCAACATGTTTCTCA--AA-AA-CAAA--C-A--T-- 1116 ||||||||||||||||||||| || ||| ||||||||| || || |||| | | | Sbjct 1063 CTCTTTGCCACTCTAGGTTAGGTGAAACTTGTTTCTCACTAACAAACAAAGGCCACATAG 1122 Query 1117 -----------CATCATAGTATGCTGCCTCTCTTGTTTCA-TCACTCCTCTAAAACTTAC 1164 |||||||||||||||| | |||||| ||| | ||||||||||||||||| Sbjct 1123 TATTGATATTACATCATAGTATGCTGCTTTTCTTGTCTCAGT-ACTCCTCTAAAACTTAC 1181 Query 1165 ACAGCCATAGCAAGGTGG-TTTTCATCCTTTTGTAGGTGATTAAGCATCATTCAGCTGGA 1223 |||| ||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 1182 ACAGACATAGCAAG-TGGGTTTTCAACCTTTTGTAGGTGATTAAGCACCATTCAGCTGGA 1240 Query 1224 GACATTTACAAAGGATCCCCATTGTCTGCTGCAGAAGCCTCTCGGAATAAGTCTCCTCTA 1283 ||||||||||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 1241 GACATTTACAAAGGATCCCAATCATCTGCTGCAGAAGCCTCTCGAAAGAAGTCTCCTCTA 1300 Query 1284 TCCAGATCCTTGGAAGCACTTGATTCTAGTCTCTGTTGATAACTTGATATACAACATCTA 1343 ||||||||||| ||||||||| ||||||||||||||||||| || | || |||| Sbjct 1301 TCCAGATCCTTAGAAGCACTTCATTCTAGTCTCTGTTGATA----GA-A--CA---TCTA 1350 Query 1344 ATGATTGGGGCCGTAATTCTG--TCACTTTTGCAGGAAGATAGCTTTTGACTCGAGCAAC 1401 ||||||| || ||| ||| |||||||||||||||||||||||||| | |||||||| Sbjct 1351 ATGATTGTGGACGT--TTCCAACTCACTTTTGCAGGAAGATAGCTTTTGTCACGAGCAAC 1408 Query 1402 TTCATTCAACAATTCTAAGGCGATTCTTTGTTTTCAATTTGAAGA-TCCAGATCCTAGAT 1460 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| Sbjct 1409 TTCATTCAACAATTCTAAGGCCATTCTTTGTTTTCAATTTGAAGAATCCAGATCCGAGAT 1468 Query 1461 TTACATAGTGGATGACAAGAAAGAACCATGCCT----C-TCATT--TT--ACTCGAAACT 1511 ||||||||||||| ||||| |||||| |||||| | ||||| || ||||| |||| Sbjct 1469 TTACATAGTGGATAACAAGCAAGAACAATGCCTTTATCATCATTCATTTTACTCGGAACT 1528 Query 1512 GTATAGA---G-----ATTGGGACTAGGAATGTACATTAGCATTCTTTTCTGTACATGAA 1563 ||||||| | ||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1529 GTATAGAATTGGGGTTATTTGGACTACGAATGTACATTAGCATTCTTTTCTGTACATGAA 1588 Query 1564 AAATAGGTGAATTGGAGGGTTAGTAT 1589 |||||||||||| ||||||||||||| Sbjct 1589 AAATAGGTGAATCGGAGGGTTAGTAT 1614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78463451835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5