BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478724
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13430.1 | Symbols: | RING/U-box superfamily protein | chr3... 1009 0.0
> AT3G13430.1 | Symbols: | RING/U-box superfamily protein | chr3:4367281-4368820
FORWARD LENGTH=1241
Length=1241
Score = 1009 bits (546), Expect = 0.0
Identities = 606/636 (95%), Gaps = 0/636 (0%)
Strand=Plus/Plus
Query 463 GATGATGGTGATCAGAACAATGATGGAGAAATTGATATTACTCGGCAACTTGAAGAGATT 522
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 442 GATGATGGTGATCAGAACAATGATGGAGAAATTGATATAACTCATCAACTTGAAGAGATT 501
Query 523 AGGAGGATAAGGACTAGACATTCAACTGCCATTGTTAATCTGCTTCAAGGGATTCGAGCT 582
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 502 AGGAGGATAAGGACTAGACATTCAACTGCTATTGTTAATCTGCTTCAGGGGATTCGAGCT 561
Query 583 GGGTTATTGATCGAATCCGAGACCAATGATGATAATCCCGATAACAGCGAGCTTGTCGTC 642
|| ||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||
Sbjct 562 GGATTATTGATCGAATCCGAGAACAACGAGGATAATCCCGATAATAGCGAGCTTGTCGTC 621
Query 643 TTGATCAACTCCTTTAACCAAAGGATCAGGGTTCATCAAGATTCTGTCGACACGGCTTCT 702
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 622 TTGATCAACTCATTTAACCAAAGGATCAGGGTTCATCAAGATTCTGTAGACACCACTTCT 681
Query 703 GTTCCTCCTGGATCTTTGGGTGACTATTTCATTGGACCTGGATTCGAGACGTTGCTTCAG 762
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GTTCCTTCTGGATCTTTGGGTGACTATTTCATTGGACCTGGATTCGAGACGTTGCTTCAG 741
Query 763 CGTTTGGCTGAGAATGATCTGAACAACCGGTATGGGACACCTCCAGCTACAAAAGAAGCG 822
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 742 CGTTTGGCTGAGAATGATCTGAACAACAGGTATGGGACACCTCCAGCTACAAAAGAAGCG 801
Query 823 GTTGAGGCCTTGGCCATGGTGAAAATCAAAGAGAGTTTGTTGCAATGTAGTGTGTGTTTG 882
|||||||| ||||| |||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 802 GTTGAGGCATTGGCGATGGTGAAAATCGAAGATAGTTTGTTGCAGTGTAGTGTGTGTTTG 861
Query 883 GATGATTTTGAGATTGGAATGGAGGCTAAAGAGATGCCGTGTAAGCATAAGTTTCATAGT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GATGATTTTGAGATTGGAATGGAGGCTAAAGAGATGCCGTGTAAGCATAAGTTTCATAGT 921
Query 943 GACTGCTTGTTGCCATGGCTTGAGCTTCATAGCTCATGCCCTGTTTGCAGATATCTGCTT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GACTGCTTGTTGCCATGGCTTGAGCTTCATAGCTCATGCCCTGTTTGCAGATATCTGCTT 981
Query 1003 CCTACAGCAGATGATGATGAGCCAAAGAAGGATGCAGAAACATTGAGAAACGATGATAAC 1062
||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 982 CCTACAGGAGATGATGATGAGCCAAAGACTGATGCAGAAACATCGAGAAACGATGATAAC 1041
Query 1063 AATGGCGATATCAGTGATGCTTCTATGGCGAGCAAT 1098
|||| ||||||||| ||||||||||||| || |||
Sbjct 1042 AATGAAGATATCAGTAATGCTTCTATGGCTAGTAAT 1077
Score = 291 bits (157), Expect = 1e-77
Identities = 236/271 (87%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 190 AGAGAGAGAGTTAGAACAAGGAAGGATTGAGCTATGGAAATGGAAGATGCAACAGAGACT 249
|||||||||||| ||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 142 AGAGAGAGAGTTTGAACAAGGAAGGATTGAAC--T----ATGGAAGATGCATCAGAGACT 195
Query 250 AGGTACTGGTGTCACATGTGCTCTCGATCGGTGGTTCCATTGATTCAAGACCAAATCATC 309
|| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 196 AGCTACTGGTGTCACATGTGCTCCCGATCGGTGATTCCATTGATTCAAGACGAAATCATC 255
Query 310 AATTGCAATTTCTGTCAAAGTGGATTCGTTGAACAAATGGATAATGATGATCAAGATTCG 369
|| |||||||||||||||||||| || |||||| ||||||||||| | || || |
Sbjct 256 AAATGCAATTTCTGTCAAAGTGGTTTTGTTGAAGAAATGGATAAT-A--AT---GA-T-- 306
Query 370 GATCATCAGGCTGCTGATTCTCTCTGGGCTCCTATCTTGATGGAGATGATGAACAATCA- 428
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 307 GACCATCAGGCTGCTGATTCTCTCTGGACTCCTATCTTGATGGAGATGATGAACAA-CAA 365
Query 429 TGACCAACAACATTCAACGAATCAGGAAGAC 459
| || | |||||||| || ||||||||||||
Sbjct 366 TCACGACCAACATTCTACCAATCAGGAAGAC 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5