BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478727
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1 |... 1725 0.0
AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | ... 608 4e-173
> AT3G13445.1 | Symbols: TBP1, TFIID-1 | TATA binding protein 1
| chr3:4379793-4382224 FORWARD LENGTH=1223
Length=1223
Score = 1725 bits (934), Expect = 0.0
Identities = 1145/1240 (92%), Gaps = 41/1240 (3%)
Strand=Plus/Plus
Query 1 CCCAAATCCGAGACGCAAGTCGGTGACCT-C-CT-TCTCACAGATCTAAAAACCAGAAAC 57
||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||| |
Sbjct 1 CCCAAATCCGAAACGCAAGTCGATGACCTCCTCTCTCTCACAGATCTAAAAACCAGAAGC 60
Query 58 GAGAG-AACAAATTCACTCTCTCCCTTATATAAGCACCGATTTATAAATCTTTTTCCCTC 116
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGAAACAAATTCACTCTC-CCCTTATATAAGCACCGATTTATAAATCTTTTTCCCTC 119
Query 117 TCCGATTCTCAATTCTTTGTATAAAAAGCTTCTCCTTTTCTCAATTCTTCGGCTTCCTTT 176
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TTCGATTCTCAATTCTTTGTATAAAAGGCTTCTCCTTTTCTCAATTCTTCGGCTTCCTTT 179
Query 177 CG-CCAAATTCTTCCCGCGAATCTTCCCTAATCGTCTTAAAGCTACGAAACCCTAGATTT 235
|| ||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 180 CGCCCAAACTCTTCCCTCGAATCTTTCCTTCTCGTCTTAAAGCTACGAAACCCTAGATTT 239
Query 236 CGGATTTCCTCGCTATCCAAAGAATAATGGCTGATCAAGGATTGGAAGGGAGTACTCCAG 295
|||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 240 CGGATTTCTTCGCTATCCAAAGAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAG 299
Query 296 TGGACCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCCACGG 355
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCCACGG 359
Query 356 TGAACCTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAAT 415
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAACTTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAAT 419
Query 416 ATAATCCCAAGCGTTTTGCTGCTGTTATTATGAGGATCAGAGAACCGAAGACTACAGCAT 475
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 420 ATAATCCCAAGCGTTTTGCTGCGGTGATAATGAGGATCAGAGAACCGAAGACTACAGCAT 479
Query 476 TGATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCGAAGAGTGAGTACTTTTCGAAGA 535
| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||
Sbjct 480 TAATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCTAAGAGCGAGGACTTTTCGAAGA 539
Query 536 TGGCTGCCCGAAAGTATGCTAGGATTGTGCAGAAATTGGGATTCTCTGCAAAATTCAAGG 595
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 TGGCTGCTAGAAAGTATGCTAGGATTGTGCAGAAATTGGGATTCCCTGCAAAATTCAAGG 599
Query 596 ATTTCAAGATTCAGAATATCGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAG 655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAG 659
Query 656 GTCTTGCTTACTCTCACGCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCCAGGGCTGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCTTGCTTACTCTCACGCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCCAGGGCTGA 719
Query 716 TTTATAGGATGAAAGTGCCTAAAATCGTCCTTCTAATCTTTGTCTCTGGGAAGATCGTTA 775
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 720 TTTATAGGATGAAAGTCCCAAAAATCGTCCTTCTAATCTTTGTCTCTGGGAAGATCGTAA 779
Query 776 TAACAGGAGCCAAGATGAGAGAGGAGACCTACAGAGCCTTTGAGAATATATACCCCGTGC 835
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 780 TAACAGGAGCCAAGATGAGAGATGAGACCTACAAAGCCTTTGAGAATATATACCCCGTGC 839
Query 836 TCACGGAATTCAGAAAGATACAGCAATAGGGTCAAGGATTTGTTCCCTGCAGAACTAGTT 895
|| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 840 TCTCGGAATTCAGAAAGATACAGCAATAGG-TCACGGATTTGTTCCCTGCAAAACTAGTT 898
Query 896 GTGCGGTCTTAGCCCCTTGGAGTTGCTAAAGCTTGCTGAGAATTTTGCCCTTGAACAAGG 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 GTGCGGTCTTAGCCCCTTGGAGTTGCTAAAGCTTGCTGAGAATTTTGCCCTTGAACAAAG 958
Query 956 GCTTTCACAGTAGCTAGACTCTCACCTTGTGTTTTGGTTCATAATATAACATTGTATATA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCTTTCACAGTAGCTAGACTCTCACCTTGTGTTTTGGTTCATAATATAACATTGTATATA 1018
Query 1016 CACAATGGAGATTCCAAAGACAATTCTTCGGTTCT-TTTTCT--CTTTT-C---C-AAGA 1067
|||||||||||||| |||||||||||||||||||| |||| | ||||| | | ||||
Sbjct 1019 CACAATGGAGATTCTAAAGACAATTCTTCGGTTCTATTTTTTTTCTTTTTCTTTCCAAGA 1078
Query 1068 TATGTCTTACATGTACGATTT-TGTAGTATCCTTAGAGCATGATTAACAATAGTATCTTA 1126
||||||||||||||| | || |||||| |||| | ||| || || | ||| |||
Sbjct 1079 TATGTCTTACATGTATG-TTGCTGTAGTGTCCTCA---CAT--TTC-CACT--TATGTTA 1129
Query 1127 AAAATAGTTC-TTAGAAT-A-TGT-TA-----AAAGTCTTGTTTAGCATAGATTAGCCAA 1177
|| ||| | ||| | | | ||| || ||||||||||||| |||||| | |
Sbjct 1130 CAAGTAGAACCTTA-ACTCAGTGTGTAGCCCTAAAGTCTTGTTTATCATAGA---G--A- 1182
Query 1178 TTAGCCAAGATTATGAACAAAGATGGAGAGTTTCAAGATC 1217
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 1183 TTGGCCAAGATTGTGAACAAAGATGGAGAGTTTCAAGATC 1222
> AT1G55520.1 | Symbols: TBP2, ATTBP2 | TATA binding protein 2
| chr1:20725726-20728091 REVERSE LENGTH=1206
Length=1206
Score = 608 bits (329), Expect = 4e-173
Identities = 663/818 (81%), Gaps = 47/818 (6%)
Strand=Plus/Plus
Query 72 ACTCTCTCC-CT-TATATAAGCACCGATTTATAAATCTTTTTCCCTCTC---CGA-TTCT 125
||||||||| | ||||||| | || ||||| |||||| |||||||||| | ||||
Sbjct 73 ACTCTCTCCTTTATATATAATC-CCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCT 131
Query 126 CAATTCTTTGTATAAAAAG-CTTCTCCTTTTCTCAATTC-TTCGGCTTCCTTTCGCCAAA 183
| ||||||||||||||| ||||||||||| |||| || ||| ||||||||||||
Sbjct 132 -TA-TCTTTGTATAAAAAGCCTTCTCCTTTT-TCAAATCATTCACCTTCCTTTCGCC--- 185
Query 184 TTCTTCCCGCGAA--TCTTCCCTAATCGTCTTAAAG-CTACGAAACCCTAGATTTCGGAT 240
|| ||| | ||| |||| || |||| | || | ||||||||||||||||||| |
Sbjct 186 TT-TTCGGGGGAATTTCTT-CC-AATC-TGTT-GGGTTTACGAAACCCTAGATTTCGAAA 240
Query 241 TTCC---TCGCT-A-T--CCAAAGAATAATGGCTGATCAAGGATTGGAAGGGAGTAC-TC 292
|||| | ||| | | | |||| | |||||||||||||||| ||||||||| | |
Sbjct 241 TTCCGGATTGCTAACTAGCGAAAG-AGAATGGCTGATCAAGGAACGGAAGGGAG-CCAGC 298
Query 293 CAGTGGACCTTAGC-AAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCC 351
|||| ||||||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CAGTTGACCTTA-CTAAACATCCTTCAGGGATTGTTCCTACTCTTCAAAATATTGTCTCA 357
Query 352 ACGGTGAACCTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCT 411
|| |||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 358 ACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCT 417
Query 412 GAATATAATCCCAAGCGTTTTGCTGCTGTTATTATGAGGATCAGAGAACCGAAGACTACA 471
|||||||| ||||||||||| |||||||| || |||||||||||||| || ||||| |||
Sbjct 418 GAATATAACCCCAAGCGTTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACCACA 477
Query 472 GCATTGATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCGAAGAGTGAGTA-CTTTTC 530
|| || || || || || ||||||||||| ||||| ||||| || ||||| | |||| |
Sbjct 478 GCGTTAATTTTTGCTTCTGGGAAAATGGTGTGTACCGGAGCTAAAAGTGAACATCTTT-C 536
Query 531 GAAGATGGCTGCCCGAAAGTATGCTAGGATTGTGCAGAAA--TTGGGATTCTCTGCAAAA 588
||| | ||||| ||||||||||| ||||||| || ||| |||| ||| |||||||
Sbjct 537 AAAGCTTGCTGCAAGAAAGTATGCTCGGATTGTTCA-AAAGCTTGGCTTTC-CTGCAAAG 594
Query 589 TTCAAGGATTTCAAGATTCAGAATATCGTAGGTTCTTGTGATGTCAAATTCCCTATAAGA 648
||||||||||| ||||| ||||| || ||||| || ||||||||||||||||| || ||
Sbjct 595 TTCAAGGATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGG 654
Query 649 CTTGAAGGTCTTGCTTACTCTCAC-GCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCC 707
|||||||||||||| |||||||| | ||||||||||||||| ||||| ||||| || ||
Sbjct 655 CTTGAAGGTCTTGCATACTCTCATAG-TGCTTTCTCAAGTTACGAGCCTGAGCTATTTCC 713
Query 708 AGGGCTGATTTATAGGATGAAAGTGCCTAAA-ATCGTCCTTCTAATCTTTGTCTCTGGGA 766
||| |||| |||||||||||| | || ||| || || || || || ||||| || || |
Sbjct 714 AGGATTGATATATAGGATGAAACTTCC-AAAGATTGTACTGCTTATTTTTGTGTCAGGAA 772
Query 767 AGATCGTTATAACAGGAGCCAAGATGAGAGAGGAGACCTACAGAGCCTTTGAGAATATAT 826
|||| |||||||| ||||||||||||||||| ||||| || | || ||||||||||| |
Sbjct 773 AGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACTTATACCGCATTTGAGAATATCT 832
Query 827 ACCCCGTGCTCACG-GAATTCAGAAAGATACAGCAATA 863
|||| || || | | |||||||| ||| | ||||||||
Sbjct 833 ACCCAGTTCTTA-GAGAATTCAGGAAGGTCCAGCAATA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5