BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478729
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13450.1 | Symbols: DIN4 | Transketolase family protein | ch... 1849 0.0
> AT3G13450.1 | Symbols: DIN4 | Transketolase family protein |
chr3:4382198-4384436 REVERSE LENGTH=1360
Length=1360
Score = 1849 bits (1001), Expect = 0.0
Identities = 1114/1167 (95%), Gaps = 14/1167 (1%)
Strand=Plus/Plus
Query 3 GGCAGCTCTTGTACGCAGATTGTGCCGGCGATCGTATATTCCGGTCTCTGGTCCTGGATA 62
||||||||||||||||||||| |||||| |||| | | ||||||||||||||| ||||||
Sbjct 147 GGCAGCTCTTGTACGCAGATTCTGCCGGGGATCATCTTTTCCGGTCTCTGGTCATGGATA 206
Query 63 TAGGATGCTATCGACGATTGAAAATGTATCTGAAAATGGTAAATCGATGAATCTGTACTC 122
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||
Sbjct 207 TAGGATGCTATCGACGGTTGAAAATGTATCTGAAAGTGGTAAATCGATGAATCTATACTC 266
Query 123 TGCTATTAATCAAGCTCTTCACATCGCTTTAGAGACCGATCCTCGGTCTTATGTGTTTGG 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 TGCTATTAATCAAGCTCTTCACATCGCTTTAGAGACCGATCCTCGGTCTTATGTTTTTGG 326
Query 183 GGAAGATGTTGGTTTTGGTGGTGTGTTCCGATGTACAACCGGATTAGCTGAACGTTTTGG 242
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 327 GGAAGATGTTGGATTTGGTGGTGTCTTCCGATGTACAACAGGATTAGCTGAACGTTTTGG 386
Query 243 GAAATCTCGAGTTTTCAACACTCCTCTCTGCGAGCAAGGCATTGTTGGCTTTGGCATTGG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GAAATCTCGAGTTTTCAACACTCCTCTCTGCGAGCAAGGCATTGTTGGCTTTGGCATTGG 446
Query 303 TTTAGCTGCTATGGGAAATCGAGTTATTGCGGAAATTCAGTTTGCGGATTATATCTTCCC 362
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 447 TTTAGCTGCAATGGGAAATCGAGTTATTGCGGAAATTCAGTTTGCGGATTATATTTTCCC 506
Query 363 TGCTTTTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATACCGAAGTGGAAACCAGTT 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GGCTTTTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATACCGAAGTGGAAACCAGTT 566
Query 423 TAACTGTGGAGGACTTACAATTAGGGCACCGTATGGAGCCGTTGGTCACGGTGGACATTA 482
||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 567 TAACTGTGGAGGACTCACTATTAGGGCACCGTACGGAGCAGTTGGTCACGGTGGACATTA 626
Query 483 CCACTCACAGTCCCCTGAAGCTTTCTTCTGTCATGTCCCTGGTATCAAAGTTGTTATTCC 542
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 627 CCACTCGCAGTCCCCTGAAGCTTTCTTTTGTCATGTCCCTGGTATCAAAGTTGTTATTCC 686
Query 543 TCGAAGTCCACGGGAAGCTAAGGGATTATTATTGTCATCCATCCGTGATCCGAATCCCGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TCGAAGTCCACGGGAAGCTAAGGGATTATTATTGTCATCCATCCGTGATCCGAATCCCGT 746
Query 603 TGTCTTTTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAGGATGTCCCTGAGGATGA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 747 TGTCTTTTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAGGATGTCCCTGAAGATGA 806
Query 663 CTATATGATACCTTTATCTGAGGCAGAGGTTATACGAGAAGGTTCTGACATAACACTTGT 722
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 807 CTATATGATACCTTTATCTGAGGCAGAGGTTATGCGAGAAGGTTCCGACATAACTCTTGT 866
Query 723 TGGATGGGGAGCACAGCTCACTATCATGGAACAAGCATGTCTTGATGCAGAAAACGAAGG 782
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 867 TGGATGGGGAGCACAGCTCACTATCATGGAACAAGCATGTCTTGACGCAGAAAACGAAGG 926
Query 783 CATATCGTGTGAATTGATAGATCTCAAGACTCTGATCCCTTGGGATAAGGAAATCGTTGA 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AATATCGTGTGAATTGATAGATCTCAAGACTCTGATCCCTTGGGATAAGGAAATCGTTGA 986
Query 843 GACCTCAGTGAGAAAGACTGGCAGACTTCTTATTAGCCATGAAGCTCCTGTTACAGGAGG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GACCTCAGTGAGAAAGACTGGCAGACTTCTTATTAGCCATGAAGCTCCTGTTACAGGAGG 1046
Query 903 CTTTGGGGCAGAGATCGCTGCAACTATAGTTGAGCGTTGCTTCTTAAGGTTAGAAGCACC 962
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1047 CTTTGGGGCCGAGATCGCTGCAACTATAGTTGAGCGTTGCTTCTTGAGGTTAGAAGCACC 1106
Query 963 TGTAAGCAGAGTTTGTGGCCTGGACACTCCTTTCCCTCTAGTGTTCGAACCTTTCTACAT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TGTAAGCAGAGTTTGTGGCCTGGACACTCCTTTCCCTCTAGTGTTCGAACCTTTCTACAT 1166
Query 1023 GCCAACCAAGAACAAGGCAAGTTTTATATTGGATGCAATCAAATCAACTGTGAATTACTA 1082
|||||||||||||||| | | || | ||||||||||| ||| ||||||||||||||
Sbjct 1167 GCCAACCAAGAACAAG--A--T---AT-T-GGATGCAATCAGATCCACTGTGAATTACTA 1217
Query 1083 GCCCTTCTTAGCATTGTACACATTCTCTGATTCTCAGTCTCCTATCTTCGAAATAGTGAT 1142
|||| |||||||||||||||||| ||||||| ||||||||||||||||||| | ||
Sbjct 1218 GCCCATCTTAGCATTGTACACAT-----GATTCTCTGTCTCCTATCTTCGAAATAATTAT 1272
Query 1143 TGATGTTAGTGGTTCATACATGTAATG 1169
||||| | |||||||| ||||||||||
Sbjct 1273 TGATGCTGGTGGTTCAGACATGTAATG 1299
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1165 TAATGTATGATCTTGAAACTCTCCATCTTTGTTC 1198
|||| |||||||||||||||||||||||||||||
Sbjct 1327 TAATCTATGATCTTGAAACTCTCCATCTTTGTTC 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5