BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478735
Length=2059
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, c... 3205 0.0
> AT3G13490.1 | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase,
class II | chr3:4395725-4399325 REVERSE LENGTH=2091
Length=2091
Score = 3205 bits (1735), Expect = 0.0
Identities = 1957/2062 (95%), Gaps = 24/2062 (1%)
Strand=Plus/Plus
Query 1 AGAGATGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAGCAACTACTCCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 20 AGAGATGGAGGCACTTAAGGTATGGAGTCTAACGGCGACGCCACTGAAACAATTACTCCG 79
Query 61 TCTAACTTCTTCTTCTACACGTCTCGCCACCACAATATATGGAAGAAGATCCTACCACTT 120
|||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 80 TCTATCCTCTTCTTCTACACGTCTCGCCACCACAATATATGGACGAAGATCCTACCACTT 139
Query 121 ATCACCGGCGCTTCGATGTGCCTCCGCAGcttcttcttcttcttcttcCAATGCCACGAC 180
|||||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 140 ATCACCTGCGCTACGATGTGCCTCCGCAG---CTTCTTCTTCTTCTTCCAGTGCCACGAC 196
Query 181 GGCTGAAACTTCCAAACCATCCGGCCGCAACCGCCGGTCCGCGTCATCTTCCAATTCCAC 240
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 197 GGCTGAAACTTCTAAACCCTCCGGCCGCAATCGCCGGTCTGCGTCATCTTCCAATTCCAC 256
Query 241 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGTCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 257 CTCTGATCGTGAAGCTATCCGCTCCATTCGCCTTAAAAAGGTTGAAGAATTGAGAGGCCA 316
Query 301 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAAACTCACAGTGCAAATCAGCTTCAAGA 360
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 317 AGGTCTTGAACCTTATGCTTATAAGTGGGAAAAATCCCACAGTGCAAATCAGCTTCAAGA 376
Query 361 GATTTATAGGCATCTAGCTAATGGTGAAGAATCAGACAATGAGAGTGATCGTGTTTCTAT 420
||| |||| |||| ||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 377 GATATATAAGCATTTAGCTAACGGTGAAGAATCAGACAATGAGATTGATTGTGTTTCTAT 436
Query 421 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGGAAACTTGCATTCTTGACTCTCAGGGA 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 437 AGCTGGTAGAGTCGTTGCTCGTAGAGCCTTTGGAAAACTTGCATTCTTGACTCTCAGGGA 496
Query 481 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAGAGGCTTTCAGATGATCAGTTTGA 540
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 497 TGACTCTGGAACTATTCAGCTTTACTGTGAGAAGGAAAGACTTTCAGATGATCAGTTTGA 556
Query 541 ACAGTTGAAGCAATTCATCGACATTGGTGATATTTTGGGTGCTCGTGGCTCAATGAAGAG 600
||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 557 ACAGTTGAAGCAATTTATCGACATTGGTGATATTTTGGGTGCTAGTGGCTCGATGAAGAG 616
Query 601 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GACTGAGAAAGGGGAGCTTTCTATATGTGTGAATTCTTTTTCAATTCTCACAAAGTCTCT 676
Query 661 CCTTCCACTGCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 720
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CCTTCCACTTCCAGACAAATATCATGGTCTAACTGATATTGATAAACGTTACCGCCAACG 736
Query 721 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGAGCAAAGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 737 GTATGTTGATATGATTGCTAATCCTGAAGTGGCTGATGTGTTCCGGAGAAGGGCAAAAAT 796
Query 781 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 CGTTTCAGAGATACGCAAGACAGTTGAGTCTTTTGGATATTTGGAGGTTGAAACTCCAGT 856
Query 841 TCTTCAGGGAGCAGCTGGTGGAGCCGAAGCAAGACCTTTTGTAACGTTTCATAATTCACT 900
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 857 TCTTCAGGGAGCAGCTGGTGGAGCTGAAGCAAGACCTTTTGTAACGTTTCATAACTCACT 916
Query 901 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTGGTTGG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 917 TGGGAGGGATCTCTACCTGAGGATTGCAACTGAGCTTCACTTGAAGAGAATGCTAGTTGG 976
Query 961 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAATGAAGGCCTTTCAACACG 1020
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 977 TGGGTTTGAGAAAGTGTATGAAATTGGTCGTATATTTAGAAACGAAGGCATTTCAACACG 1036
Query 1021 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCAGAGCAT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1037 TCACAATCCTGAATTCACGACCATCGAGATGTATGAAGCTTATTCGGACTACCATAGCAT 1096
Query 1081 GATGGACATGGCAGAATTAATCGTCACTCAATGTGCAATGGCAGTTAATGGGAAGCTAAC 1140
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1097 GATGGACATGGCAGAATTAATTGTCACTCAATGTTCAATGGCAGTTAATGGGAAGCTAAC 1156
Query 1141 ACTTGATTACCAGGGAACAGAAATCTGCCTCGAGCGGCCTTGGAGAAGAGAAACCATGCA 1200
| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1157 AATTGATTACCAGGGAACAGAGATCTGCCTTGAGCGGCCTTGGAGAAGAGAAACCATGCA 1216
Query 1201 TAATCTCGTTAAAGAGATAACAGGAATCAATTTTAGTGAGTTGGGGGAAGATCTCGGAAA 1260
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1217 TAATCTCGTTAAAGAGATAACAGGAATCAATTTCAGTGAGCTAGGGGAAGATCTCGGAAA 1276
Query 1261 TGCCAAAGACACAGTTCTGCTGGCACTCCGAG-ACGTGCTTGAGCCCAAGGACAAATCTG 1319
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 1277 TGCCAAAGACACAGTTCTGCTCGCACTCC-AGGACGTGCTTGAGCCCAAGGACAAATCTG 1335
Query 1320 GAATTGGAGCTTGCTCTTCCCTAGGCCATCTGCTTAATGAGGTTTTTGAAGTTTTTGTAG 1379
||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 1336 GAATTAGAGCTTGCTCTTCCCTAGGCCATCTTCTTAATGAGATTTTTGAAGTTGTTGTAG 1395
Query 1380 AGCCAAAGCTTGTGCAGCCTACATTTGTCTTGGACTACCCAGTCGAAATATCTCCTTTGG 1439
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1396 AGCCAAAGCTTGTGCAGCCCACATTTGTCTTGGACTACCCAATCGAGATATCTCCTTTGG 1455
Query 1440 CCAAGCCACATCGCAGCAATGCAGCTTTGACTGAAAGATTTGAGCTGTTTATCTGTGGCC 1499
|||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 1456 CCAAGCCACATCGCGGCAATGCCGGTTTGACTGAAAGATTTGAGCTGTTCATCTGTGGTC 1515
Query 1500 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACGCGGTTGG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1516 GTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCCGTGGACCAGAGGACACGGTTGG 1575
Query 1560 AAGAGCAAGTAAGGCAACATAACGCAAAGAGAGCAGAGGCTGCACCGGAATCTCCTGAAC 1619
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1576 AAGAGCAAGTAAGGCAGCATAACGCAAAGAGAGCAGAGGCTGTTCGGGAATCTCCTGAAC 1635
Query 1620 CAAACGCAAAGAAAgatgatgatgatgatgaGTCATACGAGGTGGCCCTTGACGAAGACT 1679
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1636 CAAACGCAAAGAAAGATGATGATGATGATGAGTCATACGAAGTGACCCTTGACGAAGACT 1695
Query 1680 TTCTCACTGCCCTGGAATATGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1739
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TTCTCACTGCCTTGGAATACGGAATGCCTCCGGCTTCGGGAATGGGGCTTGGAATTGACA 1755
Query 1740 GGCTGGTGATGCTGTTGACAAACTCCGCGAGTATAAGAGACGTGATTGCTTTTCCTGTTC 1799
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1756 GGCTGGTGATGCTGTTGACGAACTCCGCGAGTATAAGAGACGTCATTGCTTTTCCTGTTC 1815
Query 1800 TGAAAGTTCAGCAGTAACTCTTAATCATGCCGAAAGTGGTAATGCATGTTGTAGCTTCTA 1859
||||| |||||||||||| || || ||||| || |||||||||||||||||||||| ||
Sbjct 1816 TGAAACTTCAGCAGTAACACTGAAACATGC--AA-GTGGTAATGCATGTTGTAGCTTTTA 1872
Query 1860 TAGCATTCTTGTGTATCTTTCTTTATTGGTGATTTCTCCAGCAGGAAGTTGGAGTAGGA- 1918
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 1873 TAGCATTCTTGTGTATCTTT----ATTGGTGATTTCTCCAGCAGGAAGTTGGAGGAAGAA 1928
Query 1919 TGTGTAACAGACGT-AGTTAGACAGCAAAACAAGAAAAAATTATTTTATTCTTGATGAGT 1977
|||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1929 TGTGTAACAGACGTCA-TTAGATAGCAAAACAAGAAG---TTATTTTATTCTTGATGAGT 1984
Query 1978 GCCTAACACAGACAGAACCCACAAATAAAGTTGGATCATTCCATTTTATCCCATTCGGCA 2037
|||||| | | |||||| |||||| || ||||||||||||||||||||||||| ||||
Sbjct 1985 GCCTAA-A-A--CAGAACACACAAA-AAC-TTGGATCATTCCATTTTATCCCATTTGGCA 2038
Query 2038 TGTGGTAAACAGAAAGAAACAA 2059
|||||||||||| |||||||||
Sbjct 2039 TGTGGTAAACAGTAAGAAACAA 2060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102057707985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5