BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478737

Length=314
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13500.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   359    1e-98


> AT3G13500.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G55365.1); 
Has 2761 Blast hits to 655 proteins in 118 species: Archae 
- 5; Bacteria - 503; Metazoa - 856; Fungi - 159; Plants - 239; 
Viruses - 11; Other Eukaryotes - 988 (source: NCBI BLink). 
| chr3:4399974-4400306 FORWARD LENGTH=333
Length=333

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 294/336 (88%), Gaps = 32/336 (10%)
 Strand=Plus/Plus

Query  1    ATGGCGACGGTGGCGAACGTATCCACCGACAAGTGGCAGCGGATGAGGAGGGTTCCGTCG  60
            |||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGACGGTGGCGAAATTTTCCACCGACAAGTGGCAGCGGATGAGGAGGGTTCCGTCG  60

Query  61   TCGGAGAT-ATTGAATACCCAACAGCTTATGGAGGTGGCTTGTTGCCTCCCTCTTAGTCA  119
            |||||| | || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCGGAGTTGAT-GAATACGCAACAGCTTATGGAGGTGGCTTGTTGCCTCCCTCTTAGTCA  119

Query  120  TCTCTTCATCTGTCTTTGGGAGTTTCTGTGTTTCTCCATATCCgattatgattctgatga  179
            |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  120  TCTCTTTATCTGTCTTTGGGAGTTTCTGTGTTTCTCCGTATCCGATTATGATTCTGATGA  179

Query  180  tgattatgat---g---atgatgatg-t--tgatgatgacg---atg-TG-C--T-TG--  220
            ||||||||||   |   ||||||||| |  ||||||||| |   ||| || |  | ||  
Sbjct  180  TGATTATGATTATGTTGATGATGATGATGATGATGATGATGTTGATGATGACGATGTGGT  239

Query  221  --CTTTTGATCATAATAGTAACGGCGATTATGATGATCATGGGTCTTCTTCATCATCTAA  278
              ||||||||||||||||||||||||||| |||||||||||||||||||||  | | |  
Sbjct  240  TGCTTTTGATCATAATAGTAACGGCGATTTTGATGATCATGGGTCTTCTTC--C-T-T--  293

Query  279  CTTGGATTTTGATGACTATTACCATTACCCGGACTC  314
               ||||||||||||||||||||||||| |||||||
Sbjct  294  ---GGATTTTGATGACTATTACCATTACTCGGACTC  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14577647210


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5