BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478739
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13520.1 | Symbols: AGP12, ATAGP12 | arabinogalactan protein... 773 0.0
> AT3G13520.1 | Symbols: AGP12, ATAGP12 | arabinogalactan protein
12 | chr3:4408925-4409440 FORWARD LENGTH=516
Length=516
Score = 773 bits (418), Expect = 0.0
Identities = 495/529 (94%), Gaps = 18/529 (3%)
Strand=Plus/Plus
Query 1 ATTTTATAGAGACGTCTCTGGAAACAACTTTCCCAAACTTTGGCTTATAAATACCATTTC 60
|||||||||||||||||||||||| ||| |||||||| |||||||||||||| | ||||
Sbjct 1 ATTTTATAGAGACGTCTCTGGAAAAAACATTCCCAAA-ATTGGCTTATAAATA-C-TTTC 57
Query 61 ATAACCACAAGGCCACAACAACTCATTATTCGCACCAAAGAGAAGAATAAAACCTCATCA 120
| |||||||||| | | ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 58 AAAACCACAAGG-C-C-ACAACTCATCATTCGCACCAAAGAGAAGAACAAAACATCATCA 114
Query 121 TATCTTCTATTGACTAG----ATTTCTTCTAAGTG-AAACAGAGGAGAAATGGAGTCAAT 175
||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 115 TATATTCTATTGACTAGATTAATTTCTTCTAAGTGCAAA-AGAGGAGAAATGGAGTCAAT 173
Query 176 GAACATGAAGCTCATGGTGGTGTTGATGGTGGCTATTGTGGCTTTCTCCGCCGTAGGAAA 235
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAAGATGAAGCTCATAGTGGTGTTGATGGTGGCTATTGTGGCTTTCTCCGCCGTAGGAAA 233
Query 236 CGTGGCTGCGCAGACAGAGGCTCCGGCTCCAAGTCCTACTTCCGATGCTGCCATGTTTGT 295
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 234 CGTGGCTGCGCAGACAGAGGCTCCGGCTCCAAGTCCTACTTCCGATGCTGCTATGTTTGT 293
Query 296 CCCGGCATTGTTTGCATCTGTTGCTGCTTTGGTATCAGGGTTTCTCTTCTAAACCAATCT 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 294 CCCGGCATTGTTTGCATCTGTTGCTGCTTTGGCATCAGGGTTTCTCTTCTAAACCAATCT 353
Query 356 CCACATTTCATTGAGTTAGGTTCTAAATTGTTTTCCCTTTTACTTTGGTTTATGTCTTAT 415
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 354 CCACATTTCATTGAGTTAGGTTCTAAATTGTTTTGCCTTTTACTTTCGTTTATGTCTTAT 413
Query 416 GGCATGAGCTATTTGTTATTTGTTTCTAATATTTGGACTACTATATTATAGTTCTGTGTG 475
|||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 414 GGCATGAGCTTTTTGTTATTTGTTTCTAATATTTGGACTACTATGT----GTT--GTGTG 467
Query 476 TATATGATTCATAATTAATACTATATTTATGGATTGATTTCTTTCTATC 524
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TATATGATTCATAATTAATACTATATTTATGGATTGATTTCTTTCTATC 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25066839353
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5