BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478742
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13550.1 | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-co... 1251 0.0
> AT3G13550.1 | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating
enzyme family protein | chr3:4423349-4424883 REVERSE
LENGTH=855
Length=855
Score = 1251 bits (677), Expect = 0.0
Identities = 760/800 (95%), Gaps = 6/800 (1%)
Strand=Plus/Plus
Query 1 AGAGAATCGGAAGAGGACAACGACGGGAGATGATGACACCTGGCGGAAGCGGAAGATTAA 60
|||| ||||||||| ||| ||||||||||||||||||||||||||||||||| || || |
Sbjct 58 AGAGTATCGGAAGACGACGACGACGGGAGATGATGACACCTGGCGGAAGCGGGAGGTTGA 117
Query 61 GGCCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GACCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 177
Query 121 AGACTTCAGTTTCTGCTTCTGGGAAGAGGATACAAAGAGAGATGGCGGAGCTTAACGTTG 180
|||||||||||||||| || |||||||||||||| || |||||||| ||||||||| |||
Sbjct 178 AGACTTCAGTTTCTGCGTCAGGGAAGAGGATACAGAGGGAGATGGCTGAGCTTAACATTG 237
Query 181 ATCCGCCTCCTGATTGCTCCGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 240
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATCCACCTCCTGATTGCTCAGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 297
Query 241 CCATCATTGGTCCTTCGGGAACTCCTTATGAAGGAGGAATCTTTTTTCTCGATATAATTT 300
||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 298 CCATCATTGGTCCTTCGGGAACTCCCTATGAAGGAGGGATCTTTTTCCTGGATATAATTT 357
Query 301 TCCCGTCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCCCATCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 417
Query 361 GCAATGTCGATACTGCGGGGGATTTAAGTGTGGACATTCTAAGAGATAGTTGGAGTCCAG 420
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 418 GCAATGTTGATACTGCGGGAGATTTAAGTGTGAACATTCTAAGAGATAGTTGGAGTCCAG 477
Query 421 CCCTTACAATCACAAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCCTTACAATCACTAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 537
Query 481 ATAGTCCAGCTTTACCAGTGATTGCACGGCTCTACTTGACAGATAGAGACAAGCATGACG 540
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 ATAGTCCAGCTTTACCGGTGATTGCACGGCTCTACTTGACAGATAGAGAAAAGCATGACG 597
Query 541 AGGTAGCCAAAGAATGGACTTTGCGATTTGCCAAGTGAGATTTTCGATACGAGGAAA-GA 599
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 598 AGGTAGCCAAAGAATGGACATTGCGATTTGCCAAGTGAGATCTTCAATACGAGGAAAAGA 657
Query 600 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 717
Query 660 CCATCAAAGTGGAACCACAATGTTAGATGGCCAAGAAAGAAAGTTGTTTGCTCAGATAAT 719
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 718 TCATAAAAGTGGAACCACAATGTTAGATGGCCAAGAAA-A---TTGTTTGCTCAGATAAT 773
Query 720 AGGAAACAGTGTGAGGTAGGACCAATCCTCAACAACTCCCAATTTATTGAAGGTTACACA 779
||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 774 AGGCAACAATGTGAGGTAGGACCAATCCTCAACAACTCC-AATTTATTGAAGGTTATACA 832
Query 780 ATTTAGTGTCAAATCTTTTC 799
||||||||||||||||||||
Sbjct 833 ATTTAGTGTCAAATCTTTTC 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5