BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478745
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13560.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2547 0.0
> AT3G13560.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr3:4425227-4428179 REVERSE LENGTH=2119
Length=2119
Score = 2547 bits (1379), Expect = 0.0
Identities = 1680/1819 (92%), Gaps = 46/1819 (3%)
Strand=Plus/Plus
Query 61 ttt-ttttCCATTTCCTTTCAATTTCG-TAAATAATTTTCGCCGAAAGAAAAG-aaaaaa 117
||| ||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||
Sbjct 93 TTTCTTTTCCATTTCCTTTCAATTTCGACAAATAATATTCGCCGAAAGACAAGAAAAAAA 152
Query 118 aGTCTTTACTTTTTGTG-ACCTCTT-TGTGGGTTCACTACACACACTAGTAACATCTCTG 175
||| ||||||||||| | |||||| ||||||||||| ||||||||||||||||||
Sbjct 153 AGTGTTTACTTTTTGGGTTCCTCTTCGGTGGGTTCACT----ACACTAGTAACATCTCTG 208
Query 176 AACCTGTGT-TCTG--TCTCAGCAGCAAAACCTCGAGGCTTCTTTTTC---C-TCCT-TG 227
||||||| | |||| |||||||||||||||||||||||||||||||| | | || |
Sbjct 209 AACCTGT-TCTCTGTCTCTCAGCAGCAAAACCTCGAGGCTTCTTTTTCTTTCATTCTCTC 267
Query 228 AATTTCTTCTC-CGTGATCTGAAATCTCGCCGACTGAATCTGGAACGACTCAATTTTTGT 286
||||||||||| | ||||||||| ||||||||| ||||||| | | || |
Sbjct 268 AATTTCTTCTCTC-TGATCTGAATTCTCGCCGAGTGAATCTAG-A--AC-C--------- 313
Query 287 GTAGGTTTTAGGTTTTCAAGCTCTCTG-TTCCAATGCTGCTTCCGAGATGGTTTGCAGAA 345
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 314 --AGGTTTAAGGTTTTCAAGCACTCTGTTTCCAATGCTGCTTCCGAGATGGTTTGCAGAA 371
Query 346 GCGGTCTTGCTCCTACTTTCATTTCTTGCGTTTTCAAATGCTGCATATATCGGTGTGAAC 405
||| | ||||||||||||||| ||||||| | |||||| ||||||| ||||||||| |||
Sbjct 372 GCGTTGTTGCTCCTACTTTCAATTCTTGCCTGTTCAAACGCTGCATTTATCGGTGTAAAC 431
Query 406 ATTGGAACTGATCTCACCAACATGCCATCGCCTTCAGACATCGTAACGCTTCTCCAATCG 465
||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||
Sbjct 432 ATTGGCACTGATCTCACCAACATGCCACCGCCTTCAGACATTGTAACACTTCTCAAATCA 491
Query 466 CAACAAATCACACACGTTCGTCTATATGATGCTAATAGCCACATGCTCAAAGCATTTGCC 525
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 492 CAACAAATCACACACGTCCGTCTCTATGATGCTAATAGCCATATGCTCAAAGCATTTGCC 551
Query 526 AACACTAGCATCGAAGTTATGGTTGGTGTAACTAATGACGAAATCCTCAAAATCGGACGG 585
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 552 AACACTAGCATCGAAGTTATGGTCGGTGTAACCAATGAAGAAATCCTCAAAATCGGACGG 611
Query 586 TTTCCTTCAGCTGCAGCCGCTTGGGTTAACAAGAACGTTGCTGCTTATATTCCTTCAACT 645
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 612 TTTCCTTCAGCTGCAGCTGCTTGGGTTAACAAAAACGTCGCTGCTTATATTCCTTCAACT 671
Query 646 AACATAACCGCCATTGCTGTTGGTAGCGAAGTTCTCACCACCATTCCTCACGTGGCGCCG 705
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 672 AATATAACCGCCATTGCTGTTGGTAGTGAGGTTCTCACCACGATTCCTCACGTGGCGCCG 731
Query 706 ATTCTCGCCTCGGCTCTTAACAACATTCACAAGGCTCTTGTGGCTTCTAATCTCAACTTT 765
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 ATTCTCGCCTCTGCTCTTAACAACATTCACAAGGCTCTTGTGGCTTCCAATCTCAACTTT 791
Query 766 AAGGTCAAAGTTTCCAGCCCTATGTCTATGGATATAATGCCTAAACCGTTTCCTCCATCT 825
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AAGGTCAAAGTCTCCAGCCCTATGTCTATGGATATAATGCCTAAACCGTTTCCTCCATCT 851
Query 826 ACATCGACCTTTAGCCCATCGTGGAATACCACGGTTTACCAGCTCCTCCAGTTTCTGAAG 885
||||| ||||||||||| |||||||| ||||||||||||||||| || |||||| |||||
Sbjct 852 ACATCTACCTTTAGCCCGTCGTGGAACACCACGGTTTACCAGCTTCTTCAGTTTTTGAAG 911
Query 886 AACACCGGTTCtttttttATGTTAAACGCGTATCCTTACTACGGTTACACAACCGCTAAT 945
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AACACTGGTTCCTTTTTCATGTTAAACGCGTATCCTTACTACGGTTACACAACCGCTAAT 971
Query 946 GGGATTTTCCCGCTAGATTACGCGTTGTTCAAGCAGCTTTCTCCGGTGAAGCAGATTGTT 1005
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 972 GGGATTTTCCCGCTTGATTACGCTTTGTTCAAGCAGCTTTCTCCGGTGAAGCAGATTGTT 1031
Query 1006 GATCCCAACACGCTTTTACATTACAACAGCATGTTTGATGCTATGGTTGATGCTGCTTAC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GATCCCAACACGCTTTTACATTACAACAGCATGTTTGATGCTATGGTTGATGCTGCTTAC 1091
Query 1066 TACTCCATGGAAGCTTTGAATTTCTCCAAGATTCCTGTTGTCGTCACGGAAACAGGCTGG 1125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1092 TACTCCATGGAAGCTTTGAATTTCTCCAAGATTCCTGTTGTAGTCACGGAAACAGGCTGG 1151
Query 1126 CCTTCGTCTGGTGGAGGCGATGAAGCGGCTGCAACAGTCGCTAACGCAGAGACATTCAAC 1185
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1152 CCTTCGTCTGGTGGAAGCGATGAAGCGGCTGCAACAGTCGCTAATGCGGAGACATTCAAC 1211
Query 1186 ACTAACTTGATCAAGAGAGTGTTGAACAACTCAGGTCCTCCTAGCCAACCAGACATACCG 1245
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1212 ACTAACTTGATCAAGAGAGTGCTGAACAACTCAGGTCCTCCTAGTCAACCAGACATACCG 1271
Query 1246 ATAAACACTTACATCTACGAGCTGTACAATGAAGACAAGCGGTCCGGACCAGTCTCTGAA 1305
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1272 ATAAACACTTACATCTACGAGCTGTACAATGAAGACAAGCGGTCAGGACCAGTCTCTGAA 1331
Query 1306 AGAAACTGGGGAATTTTGTTTCCAAATGGGACCTCGGTTTACCCTCTGAGCTTGAGTGGT 1365
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1332 AGAAACTGGGGGATTTTGTTTCCAAATGGGACCTCGGTTTACCCTCTGAGTTTGAGTGGT 1391
Query 1366 GGCTCTAACTCCGCAGCTCTAAACGATTCATCGATGTTCTGCGTGGCTAAAGCAGATGCT 1425
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1392 GGCTCTAGCTCCGCAGCTCTAAACGGTTCATCGATGTTCTGCGTGGCTAAAGCAGATGCT 1451
Query 1426 GACGATGATAAGTTGATTGACGGTTTGAATTGGGCGTGTGGTCAAGGCCGAGCTAACTGC 1485
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 GATGATGATAAGTTGGTTGACGGTTTGAATTGGGCGTGTGGTCAAGGCCGAGCTAACTGC 1511
Query 1486 GCTGCGATTCAACCTGGCCAACCTTGCTATCTCCCGAACGATGTAAAGAGCCATGCTTCT 1545
||||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1512 GCTGCCATTCAACCGGGCCAACCTTGCTACCTCCCTAACGATGTTAAGAGCCATGCTTCT 1571
Query 1546 TTTGCTTTCAATGACTATTACCAGAAGATGAAAAGTGCAGGTGGAACTTGTGACTTTGAT 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 TTTGCTTTCAATGACTATTACCAGAAGATGAAAAGTGCAGGTGGAACTTGTGACTTTGAT 1631
Query 1606 GGTACGGCCATCACTACGACTAGAGATCCTAGCTATAGAACATGTGCATATACGGGAAGC 1665
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GGTACGGCTATCACTACGACTAGAGATCCTAGCTATAGAACATGTGCATATACGGGAAGC 1691
Query 1666 TTAAACGCAAACTCAACGGGAGGGAA-CTTTCCTCCGAATGCGTTAGGACCCGTAAGTCC 1724
|||||||||||| | || | |||| |||||||||| ||||||||||||||| ||||||
Sbjct 1692 TTAAACGCAAACGCTACTA-ATGGAAACTTTCCTCCGGATGCGTTAGGACCCGCAAGTCC 1750
Query 1725 ATTGGGAGGAAATGCAAACGCACTTATCATCTCTAGCTACCATATTCCCTTATTGGCACC 1784
|||||||||||| |||||||||| |||||||| |||||||||| ||||| ||||||||||
Sbjct 1751 ATTGGGAGGAAACGCAAACGCACGTATCATCTTTAGCTACCATCTTCCCATATTGGCACC 1810
Query 1785 GTTGGCTCTCACGCTGTTACAGCTGTTACTTCAGCACTGACCGCCTTTTGT------TT- 1837
||| |||||||| || |||| ||||| |||||||| |||||||||||||| ||
Sbjct 1811 GTTAGCTCTCACTCTACTACAACTGTTGCTTCAGCA-TGACCGCCTTTTGTAGAACGTTT 1869
Query 1838 GCCAAAACGCGGTTTTGTA 1856
||||||| |||||||||||
Sbjct 1870 GCCAAAAAGCGGTTTTGTA 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5