BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478747
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing f... 1615 0.0
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splici... 257 1e-67
> AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429298-4432159 REVERSE LENGTH=1235
Length=1235
Score = 1615 bits (874), Expect = 0.0
Identities = 990/1044 (95%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 1 GTCTAGACACAATGAGGGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTCTAGACACAATGAGAGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGA 229
Query 61 GGGGCCGGAGCCCTAGCCCCCGGGGTCGATATGGTGGGAGTCGTGACAGGGATCTCCCAA 120
||||||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||
Sbjct 230 GGGGCCGGAGCCCTAGCCCTCGGGGCCGGTTTGGTGGGAGTCGTGACAGTGATCTCCCAA 289
Query 121 CCAGTCTTTTGGTTCGCAACCTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCAT 180
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 290 CCAGTCTCTTGGTTCGCAACTTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCAT 349
Query 181 TTGAGCAGTTTGGTCCTGTCAAGGACATCTACCTTCCAAGGGATTACTATACTGGAGATC 240
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 350 TTGAGCAGTTTGGTCCCGTCAAGGACATCTACCTTCCTAGGGATTACTATACTGGAGATC 409
Query 241 CAAGGGGGTTTGGATTCATTCAGTATGTGGATCCTGCTGATGCTGCTGAGGCTAAACATC 300
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 410 CAAGGGGGTTTGGATTCATTCAGTTTATGGATCCTGCTGATGCTGCTGAGGCTAAACATC 469
Query 301 ACATGGATGGTTCTCATCTACTTGGTCGTGAGTTGACCGTCGTATTTGCAGAAGAAAACC 360
| |||||||||| || ||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 470 AAATGGATGGTTATCTTCTTCTTGGTCGTGAGTTGACTGTCGTATTTGCTGAAGAAAACC 529
Query 361 GGAAGAAGCCAACTGAAATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCAACG 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 530 GGAAGAAGCCAACTGAGATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCCAGG 589
Query 421 ACAGAAGACGTTCTCCTCCTCGGTACTCTCGTTCTCCTCCCCCTCGCCGTGGTCGTAGAT 480
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 590 ACAGAAGACGTTCTCCTCCTCGGTACTCTCGGTCTCCTCCTCCTCGCCGTGGTCGTAGAT 649
Query 481 CACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTG 709
Query 541 TCTCACCTCAGGATAGACGATACGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATA 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 710 TCTCACCTCAGGATAGACGATATGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATA 769
Query 601 ATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAA 829
Query 661 GAAGAAGCGTGAGCCCAAGAAGAAACAGGAGTTACACGCCTGAACAAGCCAGGAGCCAAA 720
||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||
Sbjct 830 GAAGAAGCGTGAGCCCAAGAAAAAACAGGAGCTACACGCCAGAACAAGCAAGGAGCCAAA 889
Query 721 GCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAG 949
Query 781 ACCGTTCTCCAAGCCAGTGATT-AC--T--CACCATGTATCTCTCTACTCTTCAGTTTTT 835
|||||||||||||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct 950 ACCGTTCTCCAAGCCAGTGATTTATGATTACACCATATATCTCTCTACTCTTCAGTTTTT 1009
Query 836 CAGTCTTGTTTTAAGTTCTGCTTTATCAGATATTTTGTTTGCCTCTAGATTGATATATCC 895
|||||||||| | ||| || ||||||||||||||||||||| |||||||||| |||
Sbjct 1010 CAGTCTTGTTCT--GTT-TG----ATCAGATATTTTGTTTGCCTC-AGATTGATATTTCC 1061
Query 896 -TACTTAGACAGATCTTTGTAGTGCTATTGGTATTTTGCTTTATGTTGGATCCATGGATG 954
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1062 CTACTTAGACAGATATTTGTAGTGCTATTGGTATTTTGCTTTATGTTTGATCCATGGATG 1121
Query 955 ATCTTGAGACAGGATATTGAAGTAGCATGTGTTATTTGTCATCTTATCTTTT-AGATCTC 1013
|||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1122 ATCTTGAGACAGTATTTTGAATTAGCATGTGTTATTTGTCATCTTATCTTTTTAGATCTC 1181
Query 1014 ATCTAACACTGTTATGTTGAAAAA 1037
|||||||| ||||||| |||||||
Sbjct 1182 ATCTAACATTGTTATGGTGAAAAA 1205
> AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
factor 33 | chr1:20630070-20632973 FORWARD LENGTH=1267
Length=1267
Score = 257 bits (139), Expect = 1e-67
Identities = 202/232 (87%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 6 GACACAATGAGGGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGAGGGGC 65
||| |||||||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 81 GACTCAATGAGGGGAAGGAGCTACACTCCGTCACCACCTAGGGGTTATGGGAGGAGGGGT 140
Query 66 CGGAGCCCTAGCCCCCGGGGTCGATATGGTGGGAGTCGTGA-CAGGGATCTCCCAACCAG 124
|| ||||| ||||| | || |||||| | | | ||||| | |||||| ||||| |||||
Sbjct 141 CGAAGCCCAAGCCCTAGAGGCCGATAT-G-GAG-GTCGT-AGCAGGGACCTCCCGACCAG 196
Query 125 TCTTTTGGTTCGCAACCTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCATTTGA 184
||||||||||||||| ||||| |||||||||||||||||||| ||||||| | | |||||
Sbjct 197 TCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGGAAGTCGTTTGA 256
Query 185 GCAGTTTGGTCCTGTCAAGGACATCTACCTTCCAAGGGATTACTATACTGGA 236
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 257 GCAGTTTGGTCCTGTCAAGGACATTTACCTGCCAAGGGATTATTATACCGGA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5