BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478749
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family prote... 1531 0.0
AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family prote... 575 3e-163
AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family prote... 560 1e-158
> AT3G13580.3 | Symbols: | Ribosomal protein L30/L7 family protein
| chr3:4433171-4435305 FORWARD LENGTH=1569
Length=1569
Score = 1531 bits (829), Expect = 0.0
Identities = 897/929 (97%), Gaps = 7/929 (1%)
Strand=Plus/Plus
Query 255 TTTACAGAAATGACTGAAGCAGAGTCCAAGACTGTTGTCCCTGAGTCAGTGTTGAAGAAG 314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 630 TTTACAGAAATGACTGAAGCAGAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAG 689
Query 315 AGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGAGGCTGCTAAAAAG 374
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 690 AGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGAGGCTGCCAAAAAG 749
Query 375 CAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTAAGCAATACTCCAAGGAGTAC 434
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 750 CAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTAAACAGTACTCCAAGGAGTAC 809
Query 435 CAGGAGAAAGAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CAGGAGAAAGAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTT 869
Query 495 TATGTTGACCCAGAAGCTAAACTGCTTTTCATCATCCGTATCCGTGGTATCAATGCCATT 554
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 870 TATGTTGACCCAGAAGCTAAACTGCTTTTCATTATCCGTATCCGTGGTATCAATGCCATT 929
Query 555 GACCCGAAGACAAAGAAGATTTTGCAGCTTTTGCGTCTAAGACAGATTTTCAATGGTGTG 614
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 930 GACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGATTTTCAATGGTGTG 989
Query 615 TTCTTAAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTGACC 674
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 990 TTCTTGAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACC 1049
Query 675 TATGGATACCCGAACTTAAAAAGTGTGAAGGAATTGATTTACAAACGAGGTTTTGGAAAG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TATGGATACCCGAACTTAAAAAGTGTGAAGGAATTGATTTACAAACGAGGTTTTGGAAAG 1109
Query 735 CTTAACCACCAGAGGATTGCCTTGACAGACAATTCCATTGTAGACCAGGGACTAGGGAAG 794
|||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct 1110 CTTAACCACCAGAGGACTGCCTTAACAGACAATTCTATTGTAGATCAGGGGCTAGGAAAG 1169
Query 795 CATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTC 1229
Query 855 AAGGAAGCCAACAACTTTTTGTGGCCATTCCAGTTGAAGGCGCCATTGGGAGGGATGAAG 914
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1230 AAGGAAGCCAATAACTTTTTGTGGCCATTCCAGTTGAAGGCTCCATTGGGAGGGATGAAG 1289
Query 915 AAGAAGAGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAAC 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AAGAAGAGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAAC 1349
Query 975 GAGCTCGTTAGGAGAATGAACTGAAGCGTAAGCGTTTTTGCTCTGAAACTCCCTGGGAAA 1034
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1350 GAGCTCGTTAGGAGAATGAACTGAAGCGTAAGCGTTATTGCTCTGAAACTCCCTAGGAAA 1409
Query 1035 CGTTTTGCTATAGGTGGAAAAGTTCTGTTCGCTTGCTTGTGTTGCCATTGAGGCGAAGGA 1094
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1410 CGTTTTGCTATAGGTGGAAAACTTCTGTTCGCTTGCTTGTGTTGCCATTGAGGCGAAGTA 1469
Query 1095 AACATTAACGGTGAAAGACTTGAATTTTGATATTTTCTTAAGTTTGAAATTGTTAGAACA 1154
|||||| |||||||||||||| | |||||||| | |||||||||||||| ||||||
Sbjct 1470 AACATTTACGGTGAAAGACTT---T---GATATTTTAT-AAGTTTGAAATTGTAAGAACA 1522
Query 1155 CATCATTTATTTCCTTCCACATTACATCG 1183
|||||||||||||||||||||||||||||
Sbjct 1523 CATCATTTATTTCCTTCCACATTACATCG 1551
> AT2G01250.1 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:132697-134455 REVERSE LENGTH=1081
Length=1081
Score = 575 bits (311), Expect = 3e-163
Identities = 597/733 (81%), Gaps = 28/733 (4%)
Strand=Plus/Plus
Query 276 GAGTCCAAGACTGTTGTCCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGG 335
||||| ||| ||| || || ||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 113 GAGTCAAAGGTTGTAGTTCCAGAGTCGGTGTTGAAGAAGAGGAAGAGAGAGGAGGAATGG 172
Query 336 GCACTT-GCCAAGAAACAGGA-GCTTGAGGCTGCTAAAAAGCAGAATGCTGAGAAGAGGA 393
|| || | ||||| ||| | | |||| || || || ||| |||| || ||||| ||||
Sbjct 173 GC-TTTGGAGAAGAAGCAGAATG-TTGAAGCCGCCAAGAAGAAGAACGCCGAGAACAGGA 230
Query 394 AACTCATATTTAACCGGGCTAAGCAATACTCCAAGGAGTA--CCAGGAGAAAGA-AAGGG 450
| || || || || | || |||||||||||||||| || || ||||| || || ||
Sbjct 231 AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCC--GAGAAGGAGAA-GG 287
Query 451 AATTAATC-CAGCTGAAGCGTGAGG-CAAAATTGAAAGGAGGCTTT-TATGTTGACCCAG 507
| || ||| | | |||| || |||| ||| || || ||||| ||| ||||||||||| |
Sbjct 288 AGTTGATCTC-GTTGAAACGCGAGGCCAAGCTT-AAGGGAGG-TTTCTATGTTGACCCTG 344
Query 508 AAGCTAAACTGCTT-TTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCGAAGACA 566
||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 AAGCTAAGCT-CTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACT 403
Query 567 AAGAAGATTTTGCAGCTTTTGCGTCTAAGACAGATTTTCAATGGTGTGTTC-TTAAAGGT 625
||||||||| | ||||| |||||| | |||||||||||||||||||| ||| |||||| |
Sbjct 404 AAGAAGATTCTCCAGCTCTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAG-T 462
Query 626 CAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTGACCTATGGATACCC 685
||||||||| || || |||||||||||||||||||| |||||||| || || |||| |||
Sbjct 463 CAACAAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATTCCC 522
Query 686 GAACTTAAAAAGTGTGAAGGAATTGATTTACAA-ACGAGGTTTTGGAAAGCTTAACCACC 744
||||| || ||||| ||||||||||| ||||| | |||||| ||||||||||||||||
Sbjct 523 TAACTTGAAGAGTGTCAAGGAATTGATCTACAAGA-GAGGTTACGGAAAGCTTAACCACC 581
Query 745 AGAGGATTGCCTTGACAGACAATTCCATTGTAGACCAGGGACTAGGGAAGCATGGCATCA 804
||||||| || ||||| ||||| || |||||||| |||| || || |||||||| ||||
Sbjct 582 AGAGGATAGCTTTGACTGACAACTCTATTGTAGAGCAGGCTCTTGGAAAGCATGGTATCA 641
Query 805 TCTGCGTTGAGGATCTGATCCATGAGAT-CATGACGGTTGGGCCACATTTCAAGGAAGCC 863
| ||| ||||||| ||||||| ||||| | | || || || || |||||||||||||||
Sbjct 642 TTTGCACTGAGGATTTGATCCACGAGATTC-TAACAGTAGGACCTCATTTCAAGGAAGCC 700
Query 864 AACAACTTT-TTGTGGCCATTCCAG-TTGAAGGCGCCATTGGGAGGGATGAAGAAGAAGA 921
|||||||| || |||||||||||| || ||||| ||| | || || | ||||||||||
Sbjct 701 AACAACTTCCTT-TGGCCATTCCAGCTT-AAGGCACCACTAGGTGGCCTCAAGAAGAAGA 758
Query 922 GGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCG 981
| || || ||||||||||| || ||||| |||||||| |||||||||||||| |||||
Sbjct 759 GAAATCACTACGTGGAAGGTGGTGATGCCGGAAACCGTGAGAACTTCATCAATGAGCTTA 818
Query 982 TTAGGAGAATGAA 994
| ||||| |||||
Sbjct 819 TCAGGAGGATGAA 831
> AT2G44120.2 | Symbols: | Ribosomal protein L30/L7 family protein
| chr2:18249042-18250708 REVERSE LENGTH=1220
Length=1220
Score = 560 bits (303), Expect = 1e-158
Identities = 581/714 (81%), Gaps = 24/714 (3%)
Strand=Plus/Plus
Query 297 GAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTT-GCCAAGAAACA-GG 354
||||| ||| | ||||||| |||||| | || ||||||||| || ||||||||| | |
Sbjct 334 GAGTCTGTGCTAAAGAAGATCAAGAGGCAAGAGGAATGGGCA-TTGGCCAAGAAAGATGA 392
Query 355 AGCTTG-AGGCTGCTAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCT 413
||| || | |||||||| ||| ||| || |||| | || || || || || | |||
Sbjct 393 AGC-TGTA-GCTGCTAAGAAGAAGAGTGTTGAGGCCCGCAAGCTTATCTTCAAGAGAGCT 450
Query 414 AAGCAATACT-CCAAGGAGTAC-CAGGAGAAAGA-AAGGGAATTAATCCAG-CTGAAGCG 469
|||| || | |||| || ||| | ||||| || || || || |||| | |||||||
Sbjct 451 GAGCAGTA-TGCCAAAGAATACGC-TGAGAAGGATAA-CGAGTTGATCC-GATTGAAGCG 506
Query 470 TGAGGCAAAATTGAAAGGAGGCTTT-TATGTTGACCCAGAAGCTAAACTGCT-TTTCATC 527
||||| || ||||||||||| ||| || |||||||| || ||||| |||| ||| |||
Sbjct 507 GGAGGCTAAGTTGAAAGGAGG-TTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTT-ATC 564
Query 528 ATCCGTATCCGTGGTATCAATGCCATTGACCCGAAGACAAAGAAGATTTTGCAGCTTTTG 587
|| ||||||||||||||||||||||||||||| || || ||||||||| ||||||| ||
Sbjct 565 ATTCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAGATTCTGCAGCTCCTG 624
Query 588 CGTCTAAGACAGATTTTCAATGGTGTGTT-CTTAAAGGTCAACAAGGCAACCATTAA-CA 645
||| | |||||||| |||||||||||||| ||||| ||| ||||||||||| | ||| ||
Sbjct 625 CGTTTGAGACAGATCTTCAATGGTGTGTTTCTTAA-GGTGAACAAGGCAAC-AGTAAACA 682
Query 646 TGCTTCGCCGTGTTGAACCCTATGTGACCTATGGATACCCGAACTTAAAAAGTGTGAAGG 705
|||| ||||| |||||||| || ||||| || |||||||| ||||| || || || ||||
Sbjct 683 TGCTGCGCCGAGTTGAACCATACGTGACTTACGGATACCCAAACTTGAAGAGCGTTAAGG 742
Query 706 AATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGATTGC-CTTGACAGAC 764
|| |||| |||||| |||||| ||||||||| |||||||||||||| || ||| || |||
Sbjct 743 AACTGATCTACAAAAGAGGTTATGGAAAGCTGAACCACCAGAGGATAGCACTT-ACTGAC 801
Query 765 AATTCCATTGTAGACCAGGGACTAGGGAAGCATGGCATCATCTGCGTTGAGGATCTGATC 824
|| |||||||| || |||| || || |||||||| |||||||||||||||||||| |||
Sbjct 802 AACTCCATTGTGGATCAGGCTCTCGGAAAGCATGGGATCATCTGCGTTGAGGATCTCATC 861
Query 825 CATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAACAACTTTTTGTGGCCATTC 884
|| ||||||||||| ||||| || || |||||||||||||||||||| |||||||||||
Sbjct 862 CACGAGATCATGACTGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTGTGGCCATTC 921
Query 885 CAGTTGAAGGCGCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGGA 944
|| |||||||| ||| | || || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 922 CAATTGAAGGCACCACTCGGTGGCCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGGT 981
Query 945 GATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA 998
|||||||||||| | ||||| |||||||||||||| || ||||||||||| |||
Sbjct 982 GATGCTGGAAACAGGGAGAATTTCATCAACGAGCTTGTCAGGAGAATGAATTGA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5