BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478752
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13610.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1808 0.0
> AT3G13610.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:4449374-4450811
FORWARD LENGTH=1355
Length=1355
Score = 1808 bits (979), Expect = 0.0
Identities = 1133/1207 (94%), Gaps = 11/1207 (1%)
Strand=Plus/Plus
Query 1 ACAATACAATCAAAAT-CCAAAAGTCTCAATTTTTAAGCAAACAAACCaaaaaaaGATCC 59
|||| ||||||||||| || ||||||||||| |||||||||| ||| | ||||||| |||
Sbjct 1 ACAACACAATCAAAATCCCTAAAGTCTCAATCTTTAAGCAAATAAA-C-AAAAAAGCTCC 58
Query 60 AATC-TTTTTA-TCCAATGGCTCCAACACTCTCAACAACCCAATTCTCAAACCCAGCTGA 117
||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 59 TATCTTTTTTATTCCAATGGCTCCAACACTCTTGACAACCCAATTCTCAAATCCAGCTGA 118
Query 118 AGTAACCGACTTCGTAGTCCACAAAGGAAATGGTGTAAAGGGTTTATCAGAAACAGGAAT 177
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 119 AGTAACCGACTTTGTAGTCTACAAAGGAAATGGTGTTAAGGGTTTATCAGAAACAGGAAT 178
Query 178 CAAAGCTCTTCCAGATCAATACATCCAGCCATTTGAAGAACGACTCATCAACAAATTCGT 237
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 179 CAAAGCTCTTCCAGAACAATACATTCAGCCACTTGAAGAACGACTCATCAACAAATTCGT 238
Query 238 CAACGAAACAGACGAAGCCATTCCGGTGATCGATATGTCGAACCCTGACGAGAACAGAGT 297
|||||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||
Sbjct 239 CAACGAAACAGATGAAGCCATTCCAGTTATCGATATGTCGAACCCTGATGAGGACAGAGT 298
Query 298 CGCTGAAGCTGTCTGTGATGCTGCTGAGAAATGGGGTTTCTTTCAAGTGATCAACCATGG 357
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 299 CGCTGAAGCTGTTTGTGATGCTGCTGAGAAATGGGGGTTCTTTCAAGTGATCAATCATGG 358
Query 358 AGTCCCTTTGGAAGTTCTTGACGATGTTAAGGCGGCGACTCAC-AGATTCTTCAATCTCC 416
||| ||||||||||||||||| || || ||||| ||||||||| || |||||||||||||
Sbjct 359 AGTTCCTTTGGAAGTTCTTGATGACGTCAAGGCTGCGACTCACAAG-TTCTTCAATCTCC 417
Query 417 CTGTTGAAGAGAAGTGCAAATTCACTAAAGAGAATTCTCTGTCGACGACTGTTAGGTTTG 476
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 CTGTTGAAGAGAAGCGCAAGTTCACTAAAGAGAATTCGCTGTCGACGACTGTTAGGTTTG 477
Query 477 GGACGAGTTTTAGTCCTCTTGCAGAGCAAGCTCTCGAGTGGAAAGATTATCTCAGTCTCT 536
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 478 GGACGAGTTTTAGTCCTCTTGCAGAGCAAGCGCTTGAGTGGAAAGATTATCTCAGCCTCT 537
Query 537 TCTTTGTCTCTGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCTTTGTCTCTGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGT 597
Query 597 TAGAGTACATTGACAAGTCAAAGAAGATGGTGAGGAAGCTTCTAGAGTATTTGGGGAAGA 656
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 598 TAGAGTACATTAACAAGTCAAAGAAGATGGTGAGGAGGCTTCTAGAGTATTTGGGAAAGA 657
Query 657 ATCTCAACGTGAAGGAGCTAGACGAGACGAAAGAATCACTCTTTATGGGTTCGATTCGAG 716
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 ATCTCAATGTTAAAGAGCTTGACGAGACGAAAGAATCACTCTTTATGGGCTCGATTCGAG 717
Query 717 TCAACCTCAACTACTATCCGATTTGTCCTAACCCGGACCTAACCGTTGGTGTTGGTCGCC 776
||||||| |||||||| || || || ||||| ||||||||||| ||||||||||||||||
Sbjct 718 TCAACCTTAACTACTACCCCATCTGCCCTAATCCGGACCTAACAGTTGGTGTTGGTCGCC 777
Query 777 ACTCAGACGTCTCTTCTCTCACCATCCTCTTACAAGACCAGATCGGTGGTCTACACGTGC 836
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 778 ACTCAGACGTCTCTTCTCTCACCATTCTCTTACAAGACCAGATCGGTGGTCTACACGTGC 837
Query 837 GTTCTCTGGCATCAGGGAACTGGGTTCACGTGCCACCGGTTCCCGGGTCTTTTGTGATCA 896
|||||||||| ||||||||||||||||||||||| |||||| | || |||||||||||||
Sbjct 838 GTTCTCTGGCTTCAGGGAACTGGGTTCACGTGCCTCCGGTTGCTGGATCTTTTGTGATCA 897
Query 897 ACATCGGAGATGCGATGCAGATCTTGAGCAATGGTCGGTACAAGAGCGTGGAGCATCGTG 956
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 898 ACATCGGAGATGCGATGCAGATCATGAGCAATGGTCTGTACAAGAGCGTGGAGCATCGTG 957
Query 957 TCTTAGCCAACGGTAACAATAACAGAATCTCTGTTCCTATCTTTGTGAATCCAAAACCAG 1016
|||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 958 TCTTAGCCAATGGTTACAATAATAGAATCTCTGTTCCTATCTTTGTGAACCCAAAACCAG 1017
Query 1017 AGTCAGTGATTGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAG 1076
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGTCAGTTATTGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAG 1077
Query 1077 ACGTCCTGTACTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACGTCCTGTACTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAA 1137
Query 1137 CCGTCGATTACGCCAAGATCTGATCACAA-TCAACCTCAAGGAGTTCGAAttt-tttttt 1194
|||||||||||||||||||||||||| || | ||||||||||||||||| ||| ||||||
Sbjct 1138 CCGTCGATTACGCCAAGATCTGATCATAAAT-AACCTCAAGGAGTTCGA-TTTCTTTTTT 1195
Query 1195 ttttttt 1201
|||||||
Sbjct 1196 TTTTTTT 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5