BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478757
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13660.1 | Symbols: | Disease resistance-responsive (dirige... 946 0.0
AT3G13662.1 | Symbols: | Disease resistance-responsive (dirige... 335 3e-91
> AT3G13660.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:4464908-4465586 FORWARD
LENGTH=679
Length=679
Score = 946 bits (512), Expect = 0.0
Identities = 560/583 (96%), Gaps = 4/583 (1%)
Strand=Plus/Plus
Query 1 AATAAAATAATTAAGTAATCAAACATGTCAAACCTCATCCTCATCCTCGCCGCTCAAATC 60
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 26 AATAAAATAATTAGGTAACCAAACATGCCAAACCTCATCCTCATCCTCGCCGCTCAAATC 85
Query 61 CTCCTCTTTACCGCCGTTGCTTCCGCTGGAGATTTTGCTAAAGAAATGAACCCAAAAAGG 120
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 86 CTCCTCTTTACCACCGTTGCCTCCGTTGGAGATTTTGCTAAAGAAATGAACCCGAAAAGG 145
Query 121 TTCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGCGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 TTCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGCGGT 205
Query 181 CAAAACCCTA-CT---GCCATCATGATTCAGAAGGCGGTTTCAAACTCCTCAACCTCCTT 236
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CAAAACCCTAGCTACTGCCATCATGATTCAGAAGGCGGTTTCAAACTCCTCAACCTCCTT 265
Query 237 CGGATCAATCACAATGATGGACAACGCACTAACATCTGATGTGCCCGTTAACTCGACTGT 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CGGATCAATCACAATGACGGACAACGCACTAACATCTGATGTGCCCGTTAACTCGACTGT 325
Query 297 GGTAGGCCAGGCCCAAGGTTTTTACGCCGGAGCGGCTCAACGTGAGTTGGGCTTCTTGAT 356
|||||||||| |||||||||||||||| |||||||| ||||||||| | |||||||||||
Sbjct 326 GGTAGGCCAGTCCCAAGGTTTTTACGCTGGAGCGGCCCAACGTGAGCTAGGCTTCTTGAT 385
Query 357 GGCGATGAATTTCGCTTTCAAGACAGGGAAGTACAACGGGAGTACGATCACAATTCTTGG 416
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 386 GGCGATGAATTTCGCTTTCAAAACAGGGAAGTACAATGGGAGTACGATCACAATTCTTGG 445
Query 417 CCGGAACACGGTATTCTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGAAGTGGAGTCTT 476
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 446 CCGGAACACGGTGTTCTCGAAGGTTAGGGAAATGACGGTGGTCGGAGGAAGTGGAATCTT 505
Query 477 CCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATCCAAAGACAGGAGA 536
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 CCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATCCTAAGACAGGAGA 565
Query 537 CGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGATAT 579
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGATAT 608
> AT3G13662.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr3:4467090-4468498 FORWARD
LENGTH=550
Length=550
Score = 335 bits (181), Expect = 3e-91
Identities = 414/520 (80%), Gaps = 41/520 (8%)
Strand=Plus/Plus
Query 31 AACCTCATCCTCATCCTCGCCGCTCAAATCCTCCTCTT-TACCGCCGTTGCTTCCGCT-G 88
||||||||||| ||| ||||||| ||||||||||| || || ||||||||||||| | |
Sbjct 7 AACCTCATCCTTATCTTCGCCGCACAAATCCTCCTTTTCTA-TGCCGTTGCTTCCG-TCG 64
Query 89 GAGAT--TTTGCTAAAGAA--ATGAAC-CCAAAAAGGTT---CC--ACAAGAAGGAGAAA 138
||||| ||| ||||| |||||| ||| | || || |||| |||||||||
Sbjct 65 GAGATGAATTG-GGAAGAACCATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAA 123
Query 139 CTCACCCATCTCCGAGTCTATTGGCACGACATCT-TAAGCGGTCA-AAACCCTA-CTGCC 195
||||| ||||||||||||||||||||| || ||| ||| |||| | |||||||| || ||
Sbjct 124 CTCACTCATCTCCGAGTCTATTGGCACAAC-TCTGTAAACGGT-AGAAACCCTAGCT-CC 180
Query 196 ATCATGATTCAGA-AGGCGGT-TTCAAACTCCTCAACCTCCTTCGGATCAATCACAATGA 253
| ||||| || | || |||| || |||| || ||| | |||||| ||||| ||||
Sbjct 181 GTGATGATCCA-ACAGCCGGTCTT-GAACT-CT--TCCTTATCCGGATCGATCACCATGA 235
Query 254 TGGAC-AACGCACTAACA-TCTGATGTGCC-CGTTAACT-CGACTGTGGTAGGCCAGGCC 309
||||| | | |||||||| || |||||||| | || | |||||||||| ||||| |||
Sbjct 236 TGGACGATC-CACTAACATTC-GATGTGCCAAG-GAA-TGCGACTGTGGTGGGCCAAGCC 291
Query 310 CAAGGTTTTTACGCCGGAGCGGCTCAACGTGAGTTGGGCTTCTTGATGGCGATGAA-TTT 368
||||| | |||| | |||||| ||| | ||| | ||||||||||||| |||||| |||
Sbjct 292 CAAGGGATGTACGTAGCAGCGGCCCAAGGAGAGATAGGCTTCTTGATGGTGATGAACTTT 351
Query 369 CGCTTTCAAGACAGGGAAGTACAACGGGAGTACGATCACAATTCTTGGCCGGAACACGGT 428
||||||| || ||||||||||| ||||||||||| || |||||||| |||||| |||
Sbjct 352 -GCTTTCACTACGGGGAAGTACAATGGGAGTACGATAACGATTCTTGGGCGGAACGTGGT 410
Query 429 -ATTCTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGAAGTGGAGTCTTCCGGTTAGCTA 487
| | |||||||||||||||||||||||||||||||| |||||| |||| || || ||||
Sbjct 411 GA-TGTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGTAGTGGAATCTTTCGATTTGCTA 469
Query 488 GAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATC-CAA 526
||||||||||||||||| | || |||| ||| |||| |||
Sbjct 470 GAGGTTATGTCGAGGCTCGCACCAAGTCGTTTGATCTCAA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5