BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478762

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13674.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   817    0.0  


> AT3G13674.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; 
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G55205.1); 
Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4474777-4475908 
REVERSE LENGTH=548
Length=548

 Score =  817 bits (442),  Expect = 0.0
 Identities = 511/543 (94%), Gaps = 10/543 (2%)
 Strand=Plus/Plus

Query  1    TGCTTCTTCCTAGCAATGGCATCTTCAAGAGTGTTAGGCAGATTCTCGTCTCGATTAAAG  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  13   TGCTTCTTCCTGGCAATGGCATCTTCAAGAGTGTTAGGCAGATTCTCGTCTCGATTAAAG  72

Query  61   CCACTATGTCAAAATCTCAGCAACAAGAATGCCAATGTTTCATCACTCCCCTCTCCCATC  120
             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  73   TCTCTATGTCAAAATCTCAGCAACAAGAATGCCAATGTTTCATCACTCCCCTCTCCCATC  132

Query  121  AAATCTGCTTCACCTTCCTCAGCAACTACTCGTCGTCTCAATCGATCTTCAAGATTACCA  180
            |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  133  AAATCTGCATCACCTTCCTCAGCAACTAGTTGTCGTCTCAATCGATCTTCAAGATTACCA  192

Query  181  GTGGAATTGAGCTCGATGATACCTCTACACAGTGCTATAGCATCGTCCAGGCTAGTCTCA  240
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  193  GTGGAGTTGAGCTCGATGATACCTCTGCACAGTGCTATAGCATCGTCCAGGCTCGTCTCA  252

Query  241  AGTTTGTCCATTGAATCCAAAATCTGGGCATTAGTTCCTCAAGGTCTTTCATTGCCTTTA  300
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  253  AGTTTGTCCGTTGAATCCAAAATCTGGGGATTAGTTCCTCAAGGTCTTTCATTGCCTTTA  312

Query  301  TGACAGTATTGTTTTCTCATCTTACAACAAGTTTCCAGGAGGATAGAGACATTAAA-GAA  359
            ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  313  TGACAGTTTTCTTTTCTCATCTTACAACAAGTTTCCAGGAGGATAGAGACAT-AAACGAA  371

Query  360  CGCTTGGATTGTATCGTTCTTATAAGCTTTTATTCACATC--AAAGGTCATGTAGTTTAG  417
             ||| |||||||||||||||| | ||||||||||||||||  |||| || ||||||||||
Sbjct  372  -GCTCGGATTGTATCGTTCTTTTTAGCTTTTATTCACATCCGAAAG-TCCTGTAGTTTAG  429

Query  418  ATTCTGTTATCTTGCGCTTTTGAGTTAATCAGAAACTGAGTAATCAATGTAATGTTGCAG  477
            |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct  430  ATTCTGTTATCTTGCGGTTTTGAGTTAATCAGAAACAGAGTAATCAATGTAATGTTGCAG  489

Query  478  GCAAGATCTTTCATCTTTGGAAATTTCtttttttttttCTCATGCAATTTCTTTAGCTTA  537
            || ||||||||||||||||||||||| |||||||    ||||||||||||||||||||| 
Sbjct  490  GCTAGATCTTTCATCTTTGGAAATTTATTTTTTT----CTCATGCAATTTCTTTAGCTTG  545

Query  538  ACC  540
            |||
Sbjct  546  ACC  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5