BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478766
Length=2187
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13682.1 | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509... 2159 0.0
> AT3G13682.1 | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509
REVERSE LENGTH=2241
Length=2241
Score = 2159 bits (1169), Expect = 0.0
Identities = 1261/1306 (97%), Gaps = 4/1306 (0%)
Strand=Plus/Plus
Query 871 GGTG-AACTAAAGATTCAGAGGAAAGAAAACTTTTTGACTGGCATCTTGCTAACTTGGAA 929
|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 904 GGTGTAGCTAAAGATTCAGAGGAAAGAAAACTTTTTGACTGGCACCTTGCTAACTTGGAA 963
Query 930 TATGCTAACGCTGGGTGTCTTTCGAATCTTTCCAGCTGCTTACTGGGATCAGGATGATCC 989
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 964 TATGCTAACGCTGGGTGTCTTTCGAATCTTT-CAGCTGCTTACTGGGATCAGGATGATCC 1022
Query 990 TTACGAAATGGGTGGGGATCATTGTTTTCTTGCTGGTGGAAACTGGAGACTGATAAATGC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTACGAAATGGGTGGGGATCATTGTTTTCTTGCTGGTGGAAACTGGAGACTGATAAATGC 1082
Query 1050 ATTAGCTGAAGGGGTACCCATAATCTATGGGAAAAGCGTTGACACTATCAAGTATGGAGA 1109
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ATTAGCTGAAGGGCTACCCATAATCTATGGGAAAAGCGTTGACACTATCAAGTATGGAGA 1142
Query 1110 CGGAGGAGTTGAAGTCATTTCTGGTAGCCAGATATTTCAAGCTGACATGATTCTTTGCAC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CGGAGGAGTTGAAGTCATTTCTGGTAGCCAGATATTTCAAGCTGACATGATTCTTTGCAC 1202
Query 1170 CGTGCCGCTCGGGGTCTTGAAGAAGAGATCTATCAAGTTTGAGCCAGAGTTACCTAGAAG 1229
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1203 TGTGCCGCTTGGGGTCTTGAAGAAGAGATCTATCAAGTTTGAGCCGGAGTTACCTAGAAG 1262
Query 1230 AAAACAAGCAGCAATTGACAGGTTGGGGTTTGGCCTTCTGAACAAAGTTGCCATGCTTTT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 AAAACAAGCAGCAATTGACAGGTTGGGGTTTGGCCTTCTGAACAAAGTTGCCATGCTTTT 1322
Query 1290 CCCGTCTGTCTTTTGGGGTGATGAGTTAGACACGTTTGGATGCCTCAACGAGAGCAGCAT 1349
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1323 CCCATCTGTCTTTTGGGGTGATGAGTTAGACACGTTTGGATGCCTCAACGAGAGTAGCAT 1382
Query 1350 CAACCGAGGAGAGTTCTTTCTGTTCTACGCCTACCATACAGTCTCTGGTGGCCCTGCCTT 1409
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1383 CAACCGAGGAGAGTTTTTTCTATTCTATGCCTACCATACAGTCTCTGGTGGCCCTGCCTT 1442
Query 1410 GGTTGCCTTAGTTGCTGGAGAAGCTGCTCAACGATTTGAGTGCACAGAACCATCTGTTTT 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGTTGCCTTAGTTGCTGGAGAAGCTGCTCAACGATTTGAGTGCACAGAACCATCTGTTTT 1502
Query 1470 ACTTCACCGTGTTTTGAAAAAACTCAGAGGCATATATGGTCCTAAAGGTGTTATTGTGCC 1529
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1503 ACTTCACCGTGTTTTAAAAAAACTCAGAGGCATATATGGTCCTAAAGGTGTTGTTGTGCC 1562
Query 1530 TGACCCAATACAGACGGTTTGCACTATATGGGGAAGTGATCCTTTGTCATATGGGTCATA 1589
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1563 TGACCCAATACAGACGGTTTGCACTAGATGGGGAAGTGATCCTTTGTCATATGGGTCATA 1622
Query 1590 TTCTCATGTAAGGGTTGGTTCATCTGGCGTGGACTACGACATTCTTGCTGAAAGTGTTAG 1649
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1623 TTCTCATGTAAGGGTTGGTTCATCTGGTGTGGACTATGACATTCTTGCTGAAAGTGTTAG 1682
Query 1650 TAACCGTCTGTTCTTTGCTGGTGAGGCCACGACAAGGCAACATCCAGCCACAATGCACGG 1709
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 TAACCGTCTATTCTTCGCTGGTGAGGCCACGACAAGGCAACATCCAGCCACAATGCACGG 1742
Query 1710 TGCCTACTTAAGCGGTTTAAGAGAAGCCTCGCAGATTCTACATGTTGCGAATTATTTTCG 1769
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1743 TGCCTACTTAAGTGGTTTAAGAGAAGCCTCAAAGATTCTACATGTTGCGAATTATCTTCG 1802
Query 1770 CAGTAATCCAAAGAAACCTGTTCAAAGATACAGTGGAGTTAACATGAATGTTCTTGAAGA 1829
|||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1803 CAGTAATCTAAAGAAACCTGTTCAAAGATATAGTGGAGTTAACATAAACGTTCTTGAAGA 1862
Query 1830 TCTGTTCAAAAGACCCGACATTGCAACT-GGGAAGTTGTCATTTGTCTTCAACCCATTAA 1888
| ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 1863 TATGTTCAAAAGACCCGACATAGCAA-TAGGGAAGTTGTCATTTGTCTTCAACCCATTAA 1921
Query 1889 CCGAGGATCTGAAATCGTTTGGATTAGTCAGAGTTTGTTTTGACAACTTTGAAGACGATC 1948
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1922 CCGACGATCCGAAATCGTTTGGATTAGTCAGAGTTTGTTTTGACAACTTTGAAGAAGATC 1981
Query 1949 CAACGAATCGTCTTCAGCTTTACAGTATTCTTTCCAGGGAGCAAGCTAACAAGATCCAAG 2008
|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 1982 CAACCAATCGTCTTCAGCTTTACACTATTCTTTCCCGGGAGCAAGCTAACAAGATCAAAG 2041
Query 2009 AATTGGACGAAAGTAGTAATGAGAGCAAACTGTCGTGTCTGATGAATACTCTTGGATTAA 2068
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2042 AATTGGACGAAAATAGTAATGAGAGCAAACTATCGTGTCTGATGAATACTCTTGGATTAA 2101
Query 2069 AGCTAATGGGGGCCAACTCAGTACTAGACACAGGTGGTGCGTTGATCAGTGTCATAGCTA 2128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 AGCTAATGGGTGCCAACTCAGTACTAGACACAGGTGGTGCGTTGATCAGTGTCATAGCTA 2161
Query 2129 ACGCACGCAGAGGCAGAAGCAGGACCCATGTTGTTGCAGGGCAATG 2174
||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 2162 ACGCACGCAGAGGCAGAAGCAGGTCCCACGTGGTTGCAGGGCAATG 2207
Score = 1441 bits (780), Expect = 0.0
Identities = 845/877 (96%), Gaps = 2/877 (0%)
Strand=Plus/Plus
Query 1 ATGGATGCTCCGGCGTTAGATGGAACGGCTCCGAGGAGGAACAGGAGGAAAGTAAGTAGG 60
||| || ||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAATTCTCCGGCGTCGGATGAAACGGCTCCGAGGAGGAACAGGAGAAAAGTAAGTAGG 60
Query 61 AAGAACTACGATGAGAATGCGATGGATGATTTGATTGAGAAGCAATTTGGTGGAAATTCG 120
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 61 AAGAACTACGATGAGAATGCGATGGATGAATTGATTGAGAAGCAATTAGGTGGAAAGGCG 120
Query 121 AAGAAAAAGTACAGGACGAAGCAAGATTTGGAGAAAGAAACTGAGACTGAGGCTCTGATA 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 AAGAAAAAGTACAGGACGAAGCAAGATTTGGAGAAAGAGACTGAGACCGAGGCTCTGATA 180
Query 181 GCTTTGTCCGTAGGTTTCCCAATCGACGAATTGCTTGAAGAAGAGATTCGAGCTGGAGTT 240
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCTCTGTCCGTAGGTTTCCCAATCGACGAATTGCTTGAGGAAGAGATTCGAGCTGGAGTT 240
Query 241 GTAAGAGAATT-GTGCGGGAAAGAGCAGAACGATTACATTGTTGTTCGGAATCATATAGT 299
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAAGAGAATTAG-GCGGGAAAGAGCAGAACGATTACATTGTTGTTCGGAATCATATAGT 299
Query 300 AGCTAGGTGGAGGAGTAATGTTGGGATTTGGCTACTTAAAGATCAGATTAGAGAAACTGT 359
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 300 AGCTAGGTGGAGGGGTAATGTTGGAATTTGGCTACTCAAAGATCAGATTAGAGAAACTGT 359
Query 360 GAGTAGTGACTTTGAGCATTTGATTTCAGCTGCTTATGATTTTCTCTTGTTTAATGGATA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGTAGTGACTTTGAGCATTTGATTTCAGCTGCTTATGATTTTCTCTTGTTTAATGGATA 419
Query 420 CATCAATTTTGGGGTTTCTCCATTGTTTGCTCCTTATATTCCTGAAGAGGGTACGGAGGG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CATCAATTTTGGGGTTTCTCCATTGTTTGCTCCTTATATTCCTGAAGAGGGTACTGAGGG 479
Query 480 ATCAGTCATTGTTGTTGGTGCTGGTCTTGCTGGTTTGGCTGCTGCAAGACAGCTTTTGTC 539
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 480 ATCAGTCATTGTTGTTGGTGCTGGACTTGCTGGTTTGGCTGCTGCTAGACAGCTTTTGTC 539
Query 540 ATTTGGGTTTAAGGTTCTTGTTTTAGAAGGTAGGAGTCGTCCTGGTGGACGAGTGTACAC 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTTGGGTTCAAGGTTCTTGTTTTAGAAGGTAGGAGTCGTCCTGGTGGACGAGTGTACAC 599
Query 600 TCAGAAGATGGGAGGTAAGGATAGATTTGCAGCTGTTGAACTCGGTGGCAGTGTAATCAC 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TCAGAAGATGGGAGGTAAGGATAGATTTGCAGCTGTTGAACTCGGTGGTAGTGTAATCAC 659
Query 660 GGGTTTACATGCGAACCCACTTGGTGTTCTTGCGAGACAGCTTTCTATTCCTCTTCACAA 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GGGTTTACATGCGAACCCACTTGGAGTTCTTGCGAGACAGCTTTCTATTCCTCTTCACAA 719
Query 720 GGTTAGAGACAACTGTCCTTTGTATAATTCAGAGGGAGCACTTGTCGATAAGGTAGCTGA 779
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 720 GGTTAGAGACAACTGTCCTTTGTATAATTCAGAGGGAGTACTTGTCGATAAAGTAGCTGA 779
Query 780 CTCCAATGTTGAGTTTGGTTTCAATAAACTGCTTGACAAGGTCACCGAAGTGAGGGAGAT 839
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 780 CTCCAATGTTGAGTTTGGTTTCAACAAACTGCTTGACAAGGTCACAGAAGTAAGGGAGAT 839
Query 840 GATGGAAGGGGCAGCTAAGAAGATTTCTTTGGGTGAA 876
||||||||||||||||||||||||||||||||| |||
Sbjct 840 GATGGAAGGGGCAGCTAAGAAGATTTCTTTGGGAGAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108483377745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5