BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478769
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4 |... 2416 0.0
AT3G13700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1408 0.0
AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acc... 604 8e-172
> AT3G13710.1 | Symbols: PRA1.F4 | prenylated RAB acceptor 1.F4
| chr3:4490628-4493831 REVERSE LENGTH=2294
Length=2294
Score = 2416 bits (1308), Expect = 0.0
Identities = 1687/1862 (91%), Gaps = 57/1862 (3%)
Strand=Plus/Plus
Query 145 AAAACTATAAATCAGGACAGTTTTACATTATTTCTATCTAGTCCTCTGACTAAATAATGA 204
||||| ||||||||| |||||||||||||||||| ||| |||| ||| | | | |||||
Sbjct 218 AAAACAATAAATCAGAACAGTTTTACATTATTTCAATCAAGTCATCTTATTCACTAATGG 277
Query 205 CGAACAACAACGCGATT--C-CGACG--TCGT-CATCTCCGGCAGTGAATCACGAGTCTA 258
|||||||| ||| |||| | || || || | |||||||||||||||||||||||||||
Sbjct 278 CGAACAACGACGAGATTACCACGTCGTCTCATGCATCTCCGGCAGTGAATCACGAGTCTA 337
Query 259 TCTCACGCGCCAAGCAACATATCAAAGACGGACTAGCCACGCGCCGCCCCTGGAGAGTGA 318
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 338 TCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCGCTCCTGGAGGGTGA 397
Query 319 TGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATGCTTTCACAAGAACCA 378
|||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| ||
Sbjct 398 TGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATGTTTTCTCAAGAATCA 457
Query 379 AGACGAATCTTGCTTACTTCCGGAGTAATTACGCAATCGTAGTCTTGAACGTCATCTTCT 438
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 458 AGACAAATCTTGCTTACTTCCGTAGTAATTACGCAATCGTAATCTTGAACGTCATATTCT 517
Query 439 TCAGCTTGATTTGGCATCCGACATCGCTCATCGTCTTCGCAGGCTTGGTTTTCCTATGGA 498
|||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||
Sbjct 518 TCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTTACCGGTTTGGTTTTCCTATGGA 577
Query 499 TCTTCCTTTACTTCCTCCGTGACGAGCCTCTCAAAGTGTTCCGATTTCAGATCGACGATC 558
|||||||||| || |||||||| | ||||||||| |||||| | ||||| ||||||||||
Sbjct 578 TCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTCAGGTTTCAAATCGACGATC 637
Query 559 GTGCGGTCCTGATTGGTTTATCGGTTATAACCATCGTTCTTCTCCTGTTGACCAACGCGA 618
|||||||| |||||||| ||||||| || ||||||||||| || || |||||||||||||
Sbjct 638 GTGCGGTCTTGATTGGTCTATCGGTGATTACCATCGTTCTACTTCTATTGACCAACGCGA 697
Query 619 CGTTTAATATTGTTGCGGCGTTGGTGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGG 678
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 698 CGTTTAATATTGTTGCGGCGTTGATGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGA 757
Query 679 TTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAGGCAGCGACGACTGAAACGTCAGGAC 738
||||||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||
Sbjct 758 TTAGGAAGACGGATGATCTTTTTTTGGATGAAGAAGCGGCGACGACTGAGACTTCAGGAC 817
Query 739 TGACGTCACACCCTTCGTCTTAAAACAATCGATCTCGAATTTTATGTATATTATATTGTT 798
|||||||||||||||||||||||||| || |||||| | ||||||||||||| |||||||
Sbjct 818 TGACGTCACACCCTTCGTCTTAAAACGATTGATCTCCATTTTTATGTATATTCTATTGTT 877
Query 799 TTTGATAATC-T-TGTGTAA-TA-A-TTTA-----T-A--GTGTAAGTTTGG-tt--tt- 841
|||||| ||| | ||||||| || | |||| | | |||||||||||| || ||
Sbjct 878 TTTGATCATCTTATGTGTAATTATAGTTTATGGTGTAACCGTGTAAGTTTGGTTTGATTC 937
Query 842 t-t-t-tG------AGTTTTGAAGTTTGAACAAGCTTAATAATGAATGTTAAAGTCTTCG 892
| | | || ||||||||||| ||||||| | | |||| ||||| ||||||||||
Sbjct 938 TCTCTCTGTTTTTAAGTTTTGAAGTATGAACAAAC-T--TAAT-AATGTCAAAGTCTTCG 993
Query 893 C--CttttttttGGCGGGCTGCTTACTTTTATAACTTTTTGTCGACTTATTGGGCCATTC 950
| ||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 994 CTTCTTGTTTTTGGCGGGCTGCTTACTTTTATCACTTTTTGGCGCCTTATTGGGCCATTC 1053
Query 951 ATTAAGGCCCAATA-AACTCAGCCCATAAAATTCGAAAAGG-A-A-A---GT--GTTTAA 1001
|||||||||||||| | |||||||||||||||| |||||| | | | | |||||
Sbjct 1054 ATTAAGGCCCAATAGTA-TCAGCCCATAAAATTCAAAAAGGAACATATTTTTACATTTAA 1112
Query 1002 ACAGTGCG--TCACACTACCATTTACACGTCAGCTCTCTTCGCCGGCGTC-TATTGCAAC 1058
|||||| | ||||||| |||||||||||||||||||||||||||||| | || | ||||
Sbjct 1113 ACAGTGTGTCTCACACTTCCATTTACACGTCAGCTCTCTTCGCCGGCG-CTTAATACAAC 1171
Query 1059 CGTCAACCTCGCCGCCGGCCAGAGaaaaaaaTGGCGTATCACCAACCGTACGATCCTTTC 1118
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1172 CGTCAACCTCGCCGCCGGCTAGAG--GAAAATGGCGTATCACCAACCGTACGATCCTTTC 1229
Query 1119 TACGTCTATCAACCTCATTATCATCCACATCATCTTCCGCCGCAGCTGCCACAGTTCGCC 1178
||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | |||||
Sbjct 1230 TACGTCTATCAACTTCATTCTCATCCTCATCATCTTCCGCCGCAGCTGCCACTGCTCGCC 1289
Query 1179 GACGAACCTGGGGCGATAAACACTCTCTTTGTCTCTGGTTTGCCTAACGATGTTAAAGCT 1238
||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||
Sbjct 1290 GACGAACCTGGGGCGATTAACACTCTCTTTGTCTCTGGCTTGCCTAATGACGTTAAGGCT 1349
Query 1239 CGTGAGATCCACAATCTCTTCCGTCGCCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1350 CGTGAGATCCACAATCTCTTCCGTCGTCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1409
Query 1299 ACTGGACGCGGCGACCAGGTTGTGGCATTTGCAACATTCACGAGTCATAGATTCG-CTAT 1357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1410 ACTGGACGCGGTGACCAGGTTGTGGCATTTGCAACATTCACGAGTCATAGATTCGCCT-T 1468
Query 1358 GGCTGCAATGAATGAGCTAAATGGTGTGAAATTTGATCCTCAAACAGGATCAACTCTACA 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1469 GGCTGCAATGAATGAGCTAAATGGTGTGAAATTTGATCCTCAAACAGGATCAAATCTACA 1528
Query 1418 TATAGAACTAGCTAGATCAAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGGCCTTATGT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1529 TATAGAACTAGCTAGATCAAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGACCTTATGT 1588
Query 1478 TGTGATTGATAACAGAAACAAAGAACTGTCTAAGTCTCAGGATGACCAGAGTGATGAAGG 1537
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1589 TGTGATTGATAACAGAAACAAGGAAATTTCTAAGTCTCAGGATGACCAGAGTGATGAAGG 1648
Query 1538 GGATAGCGATCCTGATGAGGCGCAGGAACCTCGAGATAGCGAGTCTCCAAAGGAAAACGA 1597
|||||||||||| ||||||| |||||||||| || ||||||| |||||||||||||||||
Sbjct 1649 GGATAGCGATCCAGATGAGGTGCAGGAACCTGGAAATAGCGATTCTCCAAAGGAAAACGA 1708
Query 1598 TAATGCCAAAAGCGAAGCGGATTCTGAGCCAGATAGTAAAGCAACATCCGCTAATGGGCA 1657
|| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1709 TACTACCAAAAGCGAAGCGGATTCTGAGCCAGATAGTAAAGCACCATCTGCTAATGGGCA 1768
Query 1658 CTTAGAGAAAGCATATGAAGGAGGTTCTGGTGCTCGAGCTTGTTCGACATTGTTTATAGC 1717
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1769 CTTAGAGAAAGCATCTGAAGGAGGTTCTGGTGCTCGAGCTTGTTCGACCTTGTTTATAGC 1828
Query 1718 TAATCTAGGGCCTAATTGTACAGAAGATGAACTTAAACAACTCCTCTCTAGATATTCTGG 1777
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1829 TAATCTAGGGCCTAATTGTACAGAAGATGAACTCAAACAACTCCTATCTAGATATCCTGG 1888
Query 1778 TTTCAACATCTTAAAGATGCGAGCTAGAGGCGGAATGCCGGTTGCGTTTGCTGATTTTGA 1837
|||| |||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1889 TTTCCACATTTTAAAAATCCGAGCTAGAGGCGGAATGCCGGTTGCATTTGCTGATTTTGA 1948
Query 1838 GGAAATCGAGCAAGCTACTGATGCCATGAATGAACTTCAAGGGCATCTCTTATCCTCTTC 1897
||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 1949 GGAAATCGAGCAAGCTACTGATGCCATGAATCATCTTCAAGGGAACCTCTTATCCTCTTC 2008
Query 1898 AGACCGAGGCGGCATGCATATAGAATATGCAAGATCAAAGATGAGGAAACAGTAAA-GAT 1956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2009 AGACCGAGGCGGCATGCATATAGAATATGCAAGATCAAAGATGAGGAAACAGTAAAAGAT 2068
Query 1957 TA 1958
||
Sbjct 2069 TA 2070
Score = 241 bits (130), Expect = 3e-62
Identities = 162/177 (92%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 1957 TAATGTACCACATGCCAATGGTATTCTCTTCTGAAAACGAA-ATATATAGAGATCATAAG 2015
|||||||||| |||||||||||| |||||| ||||||| || ||||||||||||||||||
Sbjct 2115 TAATGTACCATATGCCAATGGTAGTCTCTTATGAAAAC-AAGATATATAGAGATCATAAG 2173
Query 2016 CAAATGAAAGCTGTATTTCTTTATTTTAAATCCCCACTTACTATTTGTTGTCATGAAGAT 2075
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2174 CAAATGAAAGCTGTATTTCTT-ATTTTAAATCTTCACTTACTATTTGTTGTCATGAAGAT 2232
Query 2076 GGATC-TTCTATGCTGACACTGACTTAAGAAATACGTGTTAATATTTTTATTCAAGA 2131
| ||| |||||||||||||||||||||||| |||| | | ||||| |||||||||||
Sbjct 2233 GAATCCTTCTATGCTGACACTGACTTAAGAGATACATATGAATATATTTATTCAAGA 2289
Score = 80.5 bits (43), Expect = 6e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 93 ACATCATCCAATTTATTTTGTTTTATTCCATATGCAAATTCAAGAGACCTTC 144
||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 142 ACACCATCTAATTTATTTGGTTTTATTCCATATGCAAATTCAAGAGACCTTC 193
> AT3G13700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4491008-4493737 REVERSE LENGTH=1996
Length=1996
Score = 1408 bits (762), Expect = 0.0
Identities = 1077/1221 (88%), Gaps = 54/1221 (4%)
Strand=Plus/Plus
Query 145 AAAACTATAAATCAGGACAGTTTTACATTATTTCTATCTAGTCCTCTGACTAAATAATGA 204
||||| ||||||||| |||||||||||||||||| ||| |||| ||| | | | |||||
Sbjct 124 AAAACAATAAATCAGAACAGTTTTACATTATTTCAATCAAGTCATCTTATTCACTAATGG 183
Query 205 CGAACAACAACGCGATT--C-CGACG--TCGT-CATCTCCGGCAGTGAATCACGAGTCTA 258
|||||||| ||| |||| | || || || | |||||||||||||||||||||||||||
Sbjct 184 CGAACAACGACGAGATTACCACGTCGTCTCATGCATCTCCGGCAGTGAATCACGAGTCTA 243
Query 259 TCTCACGCGCCAAGCAACATATCAAAGACGGACTAGCCACGCGCCGCCCCTGGAGAGTGA 318
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 244 TCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCGCTCCTGGAGGGTGA 303
Query 319 TGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATGCTTTCACAAGAACCA 378
|||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| ||
Sbjct 304 TGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATGTTTTCTCAAGAATCA 363
Query 379 AGACGAATCTTGCTTACTTCCGGAGTAATTACGCAATCGTAGTCTTGAACGTCATCTTCT 438
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 364 AGACAAATCTTGCTTACTTCCGTAGTAATTACGCAATCGTAATCTTGAACGTCATATTCT 423
Query 439 TCAGCTTGATTTGGCATCCGACATCGCTCATCGTCTTCGCAGGCTTGGTTTTCCTATGGA 498
|||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||
Sbjct 424 TCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTTACCGGTTTGGTTTTCCTATGGA 483
Query 499 TCTTCCTTTACTTCCTCCGTGACGAGCCTCTCAAAGTGTTCCGATTTCAGATCGACGATC 558
|||||||||| || |||||||| | ||||||||| |||||| | ||||| ||||||||||
Sbjct 484 TCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTCAGGTTTCAAATCGACGATC 543
Query 559 GTGCGGTCCTGATTGGTTTATCGGTTATAACCATCGTTCTTCTCCTGTTGACCAACGCGA 618
|||||||| |||||||| ||||||| || ||||||||||| || || |||||||||||||
Sbjct 544 GTGCGGTCTTGATTGGTCTATCGGTGATTACCATCGTTCTACTTCTATTGACCAACGCGA 603
Query 619 CGTTTAATATTGTTGCGGCGTTGGTGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGG 678
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 604 CGTTTAATATTGTTGCGGCGTTGATGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGA 663
Query 679 TTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAGGCAGCGACGACTGAAACGTCAGGAC 738
||||||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||
Sbjct 664 TTAGGAAGACGGATGATCTTTTTTTGGATGAAGAAGCGGCGACGACTGAGACTTCAGGAC 723
Query 739 TGACGTCACACCCTTCGTCTTAAAACAATCGATCTCGAATTTTATGTATATTATATTGTT 798
|||||||||||||||||||||||||| || |||||| | ||||||||||||| |||||||
Sbjct 724 TGACGTCACACCCTTCGTCTTAAAACGATTGATCTCCATTTTTATGTATATTCTATTGTT 783
Query 799 TTTGATAATCTT--GTGTAAT-A-A-TTTAT-----A---GTGTAAGTTTGGttt--tt- 842
|||||| ||||| ||||||| | | ||||| | ||||||||||||||| ||
Sbjct 784 TTTGATCATCTTATGTGTAATTATAGTTTATGGTGTAACCGTGTAAGTTTGGTTTGATTC 843
Query 843 t-t-t--G-----A-GTTTTGAAGTTTGAACAAGCTTAATAATGAATGTTAAAGTCTTCG 892
| | | | | |||||||||| ||||||| |||||||||| | ||||||||||
Sbjct 844 TCTCTCTGTTTTTAAGTTTTGAAGTATGAACAAACTTAATAATG--TC--AAAGTCTTCG 899
Query 893 CCt-tt-tttttGGCGGGCTGCTTACTTTTATAACTTTTTGTCGACTTATTGGGCCATTC 950
| | || ||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 900 CTTCTTGTTTTTGGCGGGCTGCTTACTTTTATCACTTTTTGGCGCCTTATTGGGCCATTC 959
Query 951 ATTAAGGCCCAATAA-ACTCAGCCCATAAAATTCGAAAAGGAA-AG-TGTTTA-A---A- 1002
|||||||||||||| | |||||||||||||||| |||||||| | | |||| | |
Sbjct 960 ATTAAGGCCCAATAGTA-TCAGCCCATAAAATTCAAAAAGGAACATATTTTTACATTTAA 1018
Query 1003 -CAGTGCGTC--ACACTACCATTTACACGTCAGCTCTCTTCGCCGGCGTCT-ATTGCAAC 1058
||||| ||| ||||| |||||||||||||||||||||||||||||| || | | ||||
Sbjct 1019 ACAGTGTGTCTCACACTTCCATTTACACGTCAGCTCTCTTCGCCGGCG-CTTAATACAAC 1077
Query 1059 CGTCAACCTCGCCGCCGGCCAGAGaaaaaaaTGGCGTATCACCAACCGTACGATCCTTTC 1118
||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 1078 CGTCAACCTCGCCGCCGGCTAGAGGAAAA--TGGCGTATCACCAACCGTACGATCCTTTC 1135
Query 1119 TACGTCTATCAACCTCATTATCATCCACATCATCTTCCGCCGCAGCTGCCACAGTTCGCC 1178
||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | |||||
Sbjct 1136 TACGTCTATCAACTTCATTCTCATCCTCATCATCTTCCGCCGCAGCTGCCACTGCTCGCC 1195
Query 1179 GACGAACCTGGGGCGATAAACACTCTCTTTGTCTCTGGTTTGCCTAACGATGTTAAAGCT 1238
||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||
Sbjct 1196 GACGAACCTGGGGCGATTAACACTCTCTTTGTCTCTGGCTTGCCTAATGACGTTAAGGCT 1255
Query 1239 CGTGAGATCCACAATCTCTTCCGTCGCCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 CGTGAGATCCACAATCTCTTCCGTCGTCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1315
Query 1299 ACTGGACGCGGCGACCAGGTT 1319
||||||||||| |||||||||
Sbjct 1316 ACTGGACGCGGTGACCAGGTT 1336
Score = 952 bits (515), Expect = 0.0
Identities = 576/606 (95%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 1317 GTTGTGGCATTTGCAACATTCACGAGTCATAGATTCG-CTATGGCTGCAATGAATGAGCT 1375
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1388 GTTGTGGCATTTGCAACATTCACGAGTCATAGATTCGCCT-TGGCTGCAATGAATGAGCT 1446
Query 1376 AAATGGTGTGAAATTTGATCCTCAAACAGGATCAACTCTACATATAGAACTAGCTAGATC 1435
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1447 AAATGGTGTGAAATTTGATCCTCAAACAGGATCAAATCTACATATAGAACTAGCTAGATC 1506
Query 1436 AAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGGCCTTATGTTGTGATTGATAACAGAAA 1495
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1507 AAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGACCTTATGTTGTGATTGATAACAGAAA 1566
Query 1496 CAAAGAACTGTCTAAGTCTCAGGATGACCAGAGTGATGAAGGGGATAGCGATCCTGATGA 1555
||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1567 CAAGGAAATTTCTAAGTCTCAGGATGACCAGAGTGATGAAGGGGATAGCGATCCAGATGA 1626
Query 1556 GGCGCAGGAACCTCGAGATAGCGAGTCTCCAAAGGAAAACGATAATGCCAAAAGCGAAGC 1615
|| |||||||||| || ||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 1627 GGTGCAGGAACCTGGAAATAGCGATTCTCCAAAGGAAAACGATACTACCAAAAGCGAAGC 1686
Query 1616 GGATTCTGAGCCAGATAGTAAAGCAACATCCGCTAATGGGCACTTAGAGAAAGCATATGA 1675
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 1687 GGATTCTGAGCCAGATAGTAAAGCACCATCTGCTAATGGGCACTTAGAGAAAGCATCTGA 1746
Query 1676 AGGAGGTTCTGGTGCTCGAGCTTGTTCGACATTGTTTATAGCTAATCTAGGGCCTAATTG 1735
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1747 AGGAGGTTCTGGTGCTCGAGCTTGTTCGACCTTGTTTATAGCTAATCTAGGGCCTAATTG 1806
Query 1736 TACAGAAGATGAACTTAAACAACTCCTCTCTAGATATTCTGGTTTCAACATCTTAAAGAT 1795
||||||||||||||| ||||||||||| ||||||||| |||||||| |||| ||||| ||
Sbjct 1807 TACAGAAGATGAACTCAAACAACTCCTATCTAGATATCCTGGTTTCCACATTTTAAAAAT 1866
Query 1796 GCGAGCTAGAGGCGGAATGCCGGTTGCGTTTGCTGATTTTGAGGAAATCGAGCAAGCTAC 1855
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1867 CCGAGCTAGAGGCGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATCGAGCAAGCTAC 1926
Query 1856 TGATGCCATGAATGAACTTCAAGGGCATCTCTTATCCTCTTCAGACCGAGGCGGCATGCA 1915
||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1927 TGATGCCATGAATCATCTTCAAGGGAACCTCTTATCCTCTTCAGACCGAGGCGGCATGCA 1986
Query 1916 TATAGA 1921
||||||
Sbjct 1987 TATAGA 1992
Score = 80.5 bits (43), Expect = 6e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 93 ACATCATCCAATTTATTTTGTTTTATTCCATATGCAAATTCAAGAGACCTTC 144
||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 48 ACACCATCTAATTTATTTGGTTTTATTCCATATGCAAATTCAAGAGACCTTC 99
> AT3G13720.1 | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acceptor)
family protein | chr3:4495019-4495956 REVERSE LENGTH=938
Length=938
Score = 604 bits (327), Expect = 8e-172
Identities = 535/632 (85%), Gaps = 28/632 (4%)
Strand=Plus/Plus
Query 199 TAATGACGAACAACAACGCGATTCCGACGTCG-----T-CATCTCCGGCAGTGAATCACG 252
||||||||||| || ||||||||||||||| | |||||||| ||| || ||
Sbjct 187 TAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCATCTCCGTTGGTGGATGTCG 246
Query 253 AGTCTATCTCACGCGCCAAGCAACATATCAAAGACGGACTAGCCACGCGCCGCCCCTGGA 312
||||| |||||||||| || || | |||||||| ||| |||||||||||||| | ||||
Sbjct 247 AGTCTCTCTCACGCGCTAAACACCGTATCAAAGCCGGGCTAGCCACGCGCCGTGCTTGGA 306
Query 313 GAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATGCTTTCACAA 372
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 307 GAGTGATGTTCGATTTCCACTCCATGGGACTGCCTCACGGTGTCTCCGATGCGTTCACAA 366
Query 373 GAACCAAGACGAATCTTGCTTACTTCCGGAGT-AATTACGCAATCGTAGTCTTGAACGTC 431
||| |||||| ||||||||||||||||| | | || ||||||||||| ||||||| |||
Sbjct 367 GAATCAAGACCAATCTTGCTTACTTCCGTA-TGAACTACGCAATCGTTGTCTTGATCGTT 425
Query 432 ATCTTCTTCAGCTTGATTTGGCATCCGACATCGCTCATCGTCTTCGCAGGCTTGGT-TTT 490
||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| ||
Sbjct 426 ATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTCTTCACCGTCTTGGTCGTT 485
Query 491 CCTATGGATCTTCCTTTACTTCCTCCGTGACGAGCCTCTCAAAG-TGTTCCGATTTCAGA 549
| |||||||| || || || |||||||| |||||| || ||| ||||||| |||||||
Sbjct 486 -GTTTGGATCTTTCTGTATTTTCTCCGTGATGAGCCTATC-AAGCTGTTCCGGTTTCAGA 543
Query 550 TCGACGATCGTG-CGGTCCTGATTGGTTTATCGGT-TATAACCATCGTTCTT-CTCCTGT 606
|||| ||||| | ||||| |||||| ||||||||| | ||||| ||||| || |||||||
Sbjct 544 TCGATGATCG-GACGGTCTTGATTGTTTTATCGGTGT-TAACCGTCGTT-TTACTCCTGT 600
Query 607 TGACCAACGCGACGTTTAATATTGTTGCG-GCG-TTGGTGGCCGGAGCTGTGTTGGTTCT 664
||||||||||||||||||||||||||| | ||| || ||| ||||||||||||||||| |
Sbjct 601 TGACCAACGCGACGTTTAATATTGTTG-GAGCGCTT-GTGACCGGAGCTGTGTTGGTTTT 658
Query 665 GATCCATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAGGCAGCGACGAC 724
||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 659 GATCCATTCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGCGGCGACGAC 718
Query 725 TGAAACGTCAGGACTGACGTCACACCCTTCGTCTTAAAACAAT-CGATCTCGAATTTTAT 783
||| || || || ||||||||| |||| ||| |||||| | | | |||||||| ||| |
Sbjct 719 TGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATCGTTTC-ATCTCGAAATTTGT 777
Query 784 GTATATTATATTGTTTTTG-ATA--ATCTTGT 812
|||| || | | |||||| ||| |||||||
Sbjct 778 GTATCTTTTCTA-TTTTTGTATATTATCTTGT 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105672147225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5