BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478773
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13740.1 | Symbols: | Ribonuclease III family protein | chr... 1347 0.0
> AT3G13740.1 | Symbols: | Ribonuclease III family protein | chr3:4504270-4506236
FORWARD LENGTH=1083
Length=1083
Score = 1347 bits (729), Expect = 0.0
Identities = 881/950 (93%), Gaps = 28/950 (3%)
Strand=Plus/Plus
Query 1 AAAAATGGTGATTTTATCGGCGAGCTCCACCGTGAGAGCTGCCTTAGATACACAACCTAG 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 37 AAAAATGGTGATTTTATCGGCGAGCTCCACTGTGAGAGCTGCCTTAGATACACAACCTAG 96
Query 61 ACTTCCGTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAACCCCTAACAATAATTCATT 120
|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 97 ACTTCCCTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAATCCCTAACGGTAATTCATT 156
Query 121 CTTACCACCACCGTCACCTCCACCGTCTCCAGGAATCAGCATCTCCGTCGCTGATTTGCT 180
|||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 157 CTTACCGCCGCCGTCACCTGCACCGTCTCCAGGAATCAGCATCTCCGTCGCCGATTTGCT 216
Query 181 CAAGCGTCCCGCAAGTAAAGA-ATTAACTGTTGACGTTGATGATACGTATATGGGATATG 239
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 217 CAAGCGTCCTTCAAGTAAAGAGA-TAACTGTTGACGTTGATGATACTTATATGGGATATG 275
Query 240 AGACATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATGCTGCTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 276 AGACATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATCCTGCTT 335
Query 300 CTTTGGCCTTCATAGGCGATTCCATTTTTGAGCTATATGCTCGTAGGCATTTTCTTTTCC 359
|||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 336 CTTTAGCCTTTATAGGCGATTCCATTTATGAGCTATATGCTCGTAGGCATTTTCTTTTCC 395
Query 360 CTCCGCTCAGTATTGAAGATTATAACGATCGTGTTAGAGCAGTGGTGCGCTGTGAAGCAC 419
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 396 CTCCGCTTAGTATTGAAGATTATAACGATCGTGTTAGAGCTGTGGTGCGCTGTGAAGCTC 455
Query 420 AGTATGCTTTGCTGAAGAAACTTGTTGATGATGACTT-CTTAACAAAGGAGGAGAGGGAT 478
|||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||
Sbjct 456 AGTATGCTTTGCTGAATAAACTTGTTGATGATGACTTTCT-AACAAAGGAAGAGAGGGAT 514
Query 479 ATTCTTAGGTGGGGAAAGAATCTAGGTTCCGCTAGAACACGTACAAGAAGGCGTGCAGGA 538
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 515 ATTCTTAGGTGGGGAAAGAATCTAGGTTCTGCTAGAACACGTACAAGAAGGCGTGCAGGT 574
Query 539 AATGCGGTTTATAACAAGGCATCATCATTGGAGACACTAATTGGTTATCTGTATCTGACA 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 575 AATGCGGTTTATAACAAGGCATCATCATTGGAAACACTAATTGGTTATCTGTATCTGACA 634
Query 599 AACGGGAAAAGATTAGAGAAAATAATGCAGAAGCTAGGATTCTCAAGCGACTCTTCAACT 658
||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||
Sbjct 635 AACGGGAAAAGATTAGAAAAAATAATGGAGAAGCTAGGATTCTCAAGTGATTCTTCAACT 694
Query 659 GAGATCGTGATTGAAGAGGCCAAGCCC-AAACCATCAGAATC--C-AACCT-CTCAAACT 713
||||||||||||||||| |||| ||| |||||||||||||| | ||||| | ||||||
Sbjct 695 GAGATCGTGATTGAAGAAACCAA-CCCTAAACCATCAGAATCATCCAACCTGC-CAAACT 752
Query 714 TCATACTCAACGAGCAAGTGGTGTCATAATAGTTGTAG-AAAACGGTCTCTACTCTTATC 772
||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||
Sbjct 753 TCATACTCAACGAGCAAGTGGTGTCATTTTAGTTGTAGGAAAA-GGTCTTTACTC----- 806
Query 773 GGATCATGGAACAGCTGAAGAATCGAAGTT-TCCTTAGGA-GGCCGGTGTAGCAT---TA 827
||||||||||| |||||||||||| ||||| || ||| | ||||||||||||| ||
Sbjct 807 GGATCATGGAAAAGCTGAAGAATCAAAGTTGTC-TTAA-ATGGCCGGTGTAGCAAGCATA 864
Query 828 -CAGTGCTCACTTAACCGGAGAAGACGTTTTTT-GTATATGTACATACGTATGTATGAAT 885
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 865 ACAGTGCTCACTTAACCGGAGAAGACGTTTTTTCGTATATGTACATACGTATGTATGAAT 924
Query 886 GTGCAACTCCTACTGGTTGGTCAAATCAAAGTGCCCATTTTTGTCTTCTG 935
|| ||||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 925 GTCCAACTCCTACTGGATA-TCAAATCAAAATGCCCATTTTTGTCTTCTG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5