BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478777
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47780.1 | Symbols: GAUT4 | galacturonosyltransferase 4 | ch... 2942 0.0
> AT5G47780.1 | Symbols: GAUT4 | galacturonosyltransferase 4 |
chr5:19347919-19350669 FORWARD LENGTH=2075
Length=2075
Score = 2942 bits (1593), Expect = 0.0
Identities = 1847/1962 (94%), Gaps = 47/1962 (2%)
Strand=Plus/Plus
Query 1 TGACGACGACGATGATGGTGAAGCTTCGGAATCTTGTTCTTTTCTTGATGCTCCTCACCG 60
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 62 TGACGACGACGATGATGGTGAAGCTTCGCAATCTTGTTCTTTTCTTCATGCTCCTCACCG 121
Query 61 TCGCAGCTCCTATCCTTCTCTACACCGATCCCGCCGCTTCCTTCAAGACCCACTTTTCTA 120
||| |||| |||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 122 TCGTTGCTCATATCCTTCTCTACACCGATCCCGCTGCCTCCTTCAAGACCCCCTTTTCTA 181
Query 121 AACGCGATTTCCTCGAGGACGTAACCGCCTTGACTTTGAATTCCGATGGGAATCGTTTGA 180
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 182 AACGCGATTTCCTCGAGGACGTAACCGCCTTGACTTTCAATTCCGATGAGAATCGTTTGA 241
Query 181 ATCTGCTTCCTCGGGAATCTCCGGCTGTGCTCAgaggagga------ggag--g---a-- 227
|||| ||||||||||||||||| |||||||||||||||||| || | | |
Sbjct 242 ATCTTCTTCCTCGGGAATCTCCCGCTGTGCTCAGAGGAGGACTCGTCGGTGCTGTCTATT 301
Query 228 -gga-AAGAATTCACGGCGGCTAGACCAATTGTCTGCTCGAGTTCTTTCCGCCACCGACG 285
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCGATAAGAATTCACGGCGGCTAGACCAATTGTCTGCTCGAGTTCTTTCCGCCACCGACG 361
Query 286 ATGATACTCACTCTCATACTGACATTTCCAT----CAA---A--C---A---AG--TC-- 326
||||||||||||| ||||||||||||||||| ||| | | | || ||
Sbjct 362 ATGATACTCACTCACATACTGACATTTCCATCAAACAAGTCACTCATGATGCAGCCTCAG 421
Query 327 ACT--C--A-TAATAGGGAAAAGATGCATGTTCAATTGACCCAACAAACCTCTGAAAAAG 381
||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 422 ACTCGCATATTAATAGGGAAAATATGCATGTTCAATTGACCCAACAAACCTCTGAAAAAG 481
Query 382 TTGATGAGC-A--AGAGCCTAATGCTTTTGGAGCTAAGAAAGATACAGGAAACTTGTTGA 438
||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 482 TTGATGAGCAACCAGAGCCTAATGCTTTTGGAGCTAAGAAAGATACTGGAAACGTGTTGA 541
Query 439 TGCCTGATGCTCAACTGAGGCACCTTAAAGATCAGCTTATTAGGGCTAAGGTTTATCTTT 498
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 542 TGCCTGATGCTCAAGTGAGGCATCTTAAAGATCAGCTTATTAGGGCAAAGGTTTATCTTT 601
Query 499 CACTTCCATCTGCAAAGGCCAATGCACATTTTGTGAGAGAGCTTCGACTCCGTATTAAAG 558
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 CCCTTCCATCTGCAAAGGCCAATGCTCATTTTGTGAGAGAGCTTCGACTCCGTATTAAAG 661
Query 559 AAGTTCAACGGGCACTTGCAGATGCCTCCAAGGATTCGGATCTGCCAAAGACTGCTACGG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 662 AAGTTCAACGGGCACTTGCAGATGCCTCCAAGGATTCGGATCTGCCAAAGACTGCTATAG 721
Query 619 AAAAGCTTAAAGCAATGGAGCAAACTTTGGCCAAAGGCAAGCAGATCCAAGATGACTGTT 678
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 722 AAAAGCTAAAAGCAATGGAGCAAACACTGGCCAAAGGCAAGCAGATCCAAGATGACTGTT 781
Query 679 CCATTGTGGTCAAGAAGCTACGTGCAATGCTCCACTCCGCAGAGGAGCAGCTACGGGTCC 738
| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 782 CTACAGTGGTCAAGAAGCTACGTGCTATGCTCCACTCCGCAGATGAGCAGCTACGGGTCC 841
Query 739 ATAAGAAGCAAACCATGTTCTTGACTCAATTGACTGCTAAGACCATTCCTAAAGGACTTC 798
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ATAAGAAGCAAACCATGTTTTTGACTCAATTGACTGCTAAGACCATTCCTAAAGGACTTC 901
Query 799 ACTGCCTCCCTCTGCGCCTCACTACAGATTATTATGCTTTAAATTCATCTCAACAACAAT 858
||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 902 ACTGCCTTCCTCTGCGCCTCACTACAGACTATTATGCTTTAAATTCATCTGAACAACAAT 961
Query 859 TCCCAAATCAGGAGAAACTAGAAGATAATCAGCTCTATCACTATGCCCTTTTCTCTGATA 918
| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 962 TTCCAAATCAGGAGAAACTAGAAGATACTCAGCTGTATCACTATGCCCTTTTCTCTGATA 1021
Query 919 ATGTTTTGGCTACGTCAGTTGTTGTTAACTCTACCATAACCAATGCAAAGCATCCCTCAA 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 ATGTTTTGGCTACGTCAGTTGTTGTTAACTCTACCATAACCAATGCAAAGCATCCCTTAA 1081
Query 979 AGCATGTCTTCCACATCGTCACTGACAGACTCAATTATGCTGCAATGAGGATGTGGTTCC 1038
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1082 AGCATGTCTTCCACATCGTCACAGACAGACTCAATTATGCGGCAATGAGGATGTGGTTCC 1141
Query 1039 TGGACAATCCACCTGACAAAGCCACCATCCAGGTTCAGAATGTTGAAGAATTTACATGGC 1098
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TGGACAATCCACCTGGCAAAGCCACCATCCAGGTTCAGAATGTTGAAGAATTTACATGGC 1201
Query 1099 TGAATTCAAGCTACAGTCCCGTTCTCAAACAGCTTAGTTCTAGATCGATGATAGATTATT 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TGAATTCAAGCTACAGTCCCGTTCTCAAACAGCTTAGTTCTAGATCGATGATAGATTATT 1261
Query 1159 ACTTCAGGGCCCACCATACAAATTCAGACACAAACTTGAAGTTCCGGAATCCAAAATACT 1218
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1262 ACTTCAGAGCCCACCATACAAATTCAGACACCAACTTGAAGTTCCGGAATCCAAAATACT 1321
Query 1219 TATCAATCCTTAATCATCTTCGTTTTTACTTGCCTGAGATCTTTCCGAAGCTCAGCAAAG 1278
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1322 TATCGATCCTTAATCATCTTCGTTTTTACTTGCCTGAGATCTTTCCCAAGCTCAGCAAAG 1381
Query 1279 TGCTCTTCTTGGATGATGATATAGTTGTGCAGAAGGACCTTTCTGGTCTTTGGTCAGTTG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGCTCTTCTTGGATGATGATATAGTTGTGCAGAAGGACCTTTCTGGTCTTTGGTCAGTTG 1441
Query 1339 ATCTGAAAGGTAATGTCAACGGTGCTGTAGAGACTTGTGGGGAAAGCTTTCATCGCTTTG 1398
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1442 ATCTGAAAGGTAATGTTAACGGTGCTGTAGAGACGTGTGGGGAAAGCTTTCATCGCTTTG 1501
Query 1399 ACCGTTATCTGAACTTCTCAAATCCACTCATCTCCAAGAACTTTGACCCTCGAGCTTGTG 1458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1502 ACCGTTATCTGAACTTCTCAAATCCACTCATTTCCAAGAACTTTGACCCTCGAGCTTGTG 1561
Query 1459 GTTGGGCATATGGTATGAATGTCTTTGATCTGGATGAATGGAAGAGGCAAAACATCACAG 1518
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GTTGGGCGTATGGTATGAATGTCTTTGATCTGGATGAATGGAAGAGGCAAAACATCACAG 1621
Query 1519 AGGTTTATCATCGATGGCAGGATCTGAATCAAGACCGAGAATTGTGGAAGCTAGGGACGT 1578
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AAGTTTATCATCGATGGCAGGATCTGAATCAAGACCGAGAATTGTGGAAGCTAGGGACGT 1681
Query 1579 TACCGCCTGGTCTCATCACATTCTGGAGACGAACATATCCGCTAGACCGGAAATGGCACA 1638
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1682 TGCCGCCTGGTCTAATCACATTTTGGAGACGAACATATCCGCTAGACCGGAAATGGCACA 1741
Query 1639 TACTAGGCCTTGGATACAACCCGAGTGTGAACCAGAGGGATATTGAGAGGGCAGCCGTGA 1698
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1742 TACTAGGGCTTGGATACAACCCGAGTGTGAACCAAAGGGATATTGAGAGGGCAGCCGTGA 1801
Query 1699 TACACTATAATGGTAACCTCAAACCATGGCTAGAGATTGGGATTCCAAGATACCGAAGCT 1758
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1802 TACACTATAATGGCAACCTCAAACCATGGCTAGAGATTGGGATTCCAAGATACAGAGGCT 1861
Query 1759 TCTGGTCAAAGCATGTAGACTATGAGCAGGTTTATCTCAGAGAATGCAACATCAATCCTT 1818
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1862 TCTGGTCAAAGCATGTAGACTATGAGCACGTTTATCTCAGAGAATGCAACATCAATCCTT 1921
Query 1819 AGAATTAGAGTCTGTTGTGAGAGCAATGTTAGACGTTTCCACTCTAATCTGAGGAGCTGA 1878
||||||||||||||||||||| ||||| ||| |||||| | | ||||||| ||| |||
Sbjct 1922 AGAATTAGAGTCTGTTGTGAGGGCAATATTATACGTTT--A-T--AATCTGACGAGATGA 1976
Query 1879 TCATTACATGAAATTGTATATGACACGGTAAAAGGAGTTCCA 1920
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 1977 TCATTACATGAAATTGTATATGTCACGGTAAAAGGAGTTCCA 2018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5