BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478784
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 | ch... 2191 0.0
AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain ... 641 0.0
> AT3G13810.2 | Symbols: IDD11 | indeterminate(ID)-domain 11 |
chr3:4544364-4547513 FORWARD LENGTH=1898
Length=1898
Score = 2191 bits (1186), Expect = 0.0
Identities = 1343/1413 (95%), Gaps = 33/1413 (2%)
Strand=Plus/Plus
Query 671 ACCCAGAATCAGAAGTGATAGCTTTATCACCAAAAACACTAATGGCAACAAACAGATTCG 730
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 382 ACCCAGAATCAGAAGTGATAGCTCTATCACCAAAAACACTAATGGCAACAAACAGATTCG 441
Query 731 TGTGTGAGATCTGCAACAAAGGTTTCCAAAGAGACCAGAATCTACAGCTTCATAGAAGAG 790
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 442 TGTGTGAAATCTGCAACAAAGGTTTTCAAAGAGACCAGAATCTACAGCTTCATAGAAGAG 501
Query 791 GTCACAATCTGCCATGGAAGCTGAAACAAAGATCCAACAAAGAAGTGATAAGGAAGAAAG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GTCACAATCTGCCATGGAAGCTGAAACAAAGATCCAACAAAGAAGTGATAAGGAAGAAAG 561
Query 851 TGTATGTATGTCCAGAAGCAAGTTGTGTCCACCATGATCCATCTAGAGCTCTCGGTGACT 910
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 562 TGTATGTATGTCCAGAAGCAAGCTGTGTCCACCATGATCCATCTAGAGCTCTCGGTGACT 621
Query 911 TAACCGGAATCAAGAAGCATTTCTGTAGAAAACATGGAGAGAAGAAGTGGAAATGTGATA 970
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 622 TAACCGGAATCAAGAAGCATTTCTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATA 681
Query 971 AGTGTTCAAAGAAATATGCTGTTCAATCAGACTGCAAGGCTCATTCTAAGACTTGTGGCA 1030
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 AGTGTTCAAAGAAATATGCTGTTCAATCAGATTGCAAGGCTCATTCTAAGACTTGTGGCA 741
Query 1031 CCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCTAGGAGGGATAGTTTCATAACTC 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCTAGGAGGGATAGTTTCATAACTC 801
Query 1091 ATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCAAGGGAAGTAGTGATACCACAAA 1150
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 802 ATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCAAGAGAAGTAGTAATACCACAAA 861
Query 1151 ACCAGAATAAT---CAACCAAACCCTCTTTTGATTCATCAATCTTCTTCTCATCCTCATC 1207
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 862 ACCAGAATAATAATCAACCAAACCCTCTTTTGATTCATCAATCTGCTTCTCATCCTCATC 921
Query 1208 -CTCATCCTCATCAAACACAACCAAACATAAACGTCTCTTCTTCTTCATCCTCCTCCCAC 1266
| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 922 AC-CATC---ATCAAACACAACCAACCATAAACGTCTCTTCTTCTTCATCTTCCTCCCAC 977
Query 1267 AACCACAACATCATCAATAGCCTTCACTTCGAAACCAACAATGGTA---CTAATAATAGT 1323
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 978 AACCACAACATCATCAATAGCCTTCACTTCGACACCAACAATGGTAATACTAATAATAGT 1037
Query 1324 AACAGCAGCAACAACCATCTCCATACATTTCCCATGAAGAAAGAGCAACAAAGTAATGAC 1383
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1038 AACAACAGCAACAACCATCTCCATACATTTCCCATGAAGAAAGAGCAACAAAGCAATGAC 1097
Query 1384 CATATCATGAATTACCACCATAGTATC--CC-TCCTTGGCTTGCTCCTCAGCCACACG-A 1439
||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
Sbjct 1098 CATATCATGAATTACCACCATAGTATCATCCCTCCTTGGCTTGCTCCTCAGCCTCACGCA 1157
Query 1440 TCTCACATCTTCAAACCCTAACCCTAGTAATGGTGGAGGAGGAGGA--A-GTTTGTTCTC 1496
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1158 -CTCACATCTTCAAACCCTAACCCTAGTAATGGTGGAGGAGGAGGAGGAAGTTTGTTCTC 1216
Query 1497 TCTAGCTTCTCCGGCTATGTCAGCCACCGCATTGCTCCAGAAAGCAGCCCAAATGGGTTC 1556
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1217 TCTTGCTTCTCCGGCTATGTCAGCCACCGCATTGCTCCAGAAAGCAGCCCAAATGGGCTC 1276
Query 1557 TACAAAGACACCTCCTTTACCACCAACCACGGACTACGAAAGGTCAACTCATAATAACAA 1616
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1277 TACAAAGACACCTCCTTTACCACCAACCACGGCCTACGAGAGGTCAACTCATAATAACAA 1336
Query 1617 CCTCACGACCACAATGGCGGCGATGATGACGTCACCATCTGGATTTATCAGCTCCAACAA 1676
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1337 CCTCACAACGACAATGGCGGCGATGATGACGTCACCATCTGGATTCATCAGCTCCAACAA 1396
Query 1677 CAACAATCAAGTTTTGTTTCAAGACTACAACGCATCCGGGTTTGATCATCACGGCGGAGA 1736
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1397 CAACAATCATGTTTTGTTTCAAGACTACAACGCATCCGGGTTTGATAATCACGGCAGAGA 1456
Query 1737 AGAAGCATTCGACGATACATTCGGCGGGTTCTTGAGAACAAGCGAAGCTACAACCGCCGC 1796
||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||||
Sbjct 1457 AGAAGCATTCGACGATACATTTGGCGGGTTCTTGAGAACAAACGAAGTTACAGCCGCCGC 1516
Query 1797 AGGATCAGAGAAGAGTA--AAA-GCGGTGGTGGAGAAGGTTTGACGAGAGATTTCTTGGG 1853
||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1517 AGGATCAGAGAAGAGTACTAAAAGCGGTGGAGGAGAAGGTTTGACGAGAGATTTCTTGGG 1576
Query 1854 GCTAAGACCGTTAATGTCTCATAACGAGATTCTAAGTTTTGCTGGTCTTGGAAATTGCAT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1577 GCTAAGACCGTTAATGTCTCATAACGAGATTCTAAGTTTTGCTGGTCTTGGAAGTTGCAT 1636
Query 1914 CAATAGCTCTGCTTCAGATCAGCTTCATCCTAAGCCTTGGCAGGGTTAGTTAGttttttt 1973
|||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1637 AAATAGCTCTGCTTCTGATCAGCTTCATCCAAAGCCTTGGCAGGGTTAGTTAGGTTTTTT 1696
Query 1974 gctcataatatttaatatgtgtatatat-tt-atatatgtagttttgcatatctataATC 2031
||||||||||| |||||||||||||||| || |||||| ||||||||||| || | ||
Sbjct 1697 GCTCATAATATATAATATGTGTATATATATTTATATATCTAGTTTTGCAT--CT-T--TC 1751
Query 2032 TTTCTCTTGTTTTGTTCTTCGTTTTATAAATTT 2064
| || | |||||||||||||||||||||||||
Sbjct 1752 T--CT-T-GTTTTGTTCTTCGTTTTATAAATTT 1780
Score = 261 bits (141), Expect = 2e-68
Identities = 155/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 447 AGACATGTTACTTCACCAGCATCATCAACCACAACAAGACGAGAATATGTCGAATCTAAC 506
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 137 AGACATGTTACTTCACCAGCATCAGCAACCACAACAAGACGAGAATATGTCGAATCTAAC 196
Query 507 ATCAGCTTCTGGGGATCAAGCAAGTGTCTCTTCAGGAAACATAACCGAAGCAAGTGGTTC 566
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 197 ATCAGCTTCCGGGGATCAAGCAAGTGTCTCTTCAGGAAATATAACTGAAGCAAGTGGTTC 256
Query 567 TAATTACTTCCCTCATCATCAGCAACTTCAAGAACAGCAACA 608
|||||||||||||||||||||||||| |||||||| |||||
Sbjct 257 TAATTACTTCCCTCATCATCAGCAACAGCAAGAACAACAACA 298
> AT1G55110.1 | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain
7 | chr1:20560284-20563171 REVERSE LENGTH=1580
Length=1580
Score = 641 bits (347), Expect = 0.0
Identities = 589/702 (84%), Gaps = 31/702 (4%)
Strand=Plus/Plus
Query 434 TGATGATGAACAAAGACATGTTACTTCACCAGCATCATCAACCACAACA-AGACGAGAAT 492
|||||||||||| |||||| ||| |||| || || || || | |||| | || |||||
Sbjct 92 TGATGATGAACAGAGACATATTATTTCATCAACAACAACAGCAACAA-ATGGAAGAGAAC 150
Query 493 ATGTCGAATCTAACATCAGCTTCTGGGGATCAAGCAAGTGTCTCTTCAGGAAACATAACC 552
||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 151 ATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGAACT 210
Query 553 GAAGCAAGTGGTTCTAATTACTTCCCTCATCATCAGCAACTTCAAGAACAGCAACAGCAG 612
||| | ||||| ||| | || | | | |||||| | || | | || ||||| |
Sbjct 211 GAAACTAGTGGCTCT-A--ACAT---T-A--ATCAGC-A--TC-ATCA-AG-AACAG-TG 254
Query 613 TTCTTTGTTCCAGATTCGCAGCCTCAAAAGAAGAGGAGAAACCAACCAGGGAATCCAGAC 672
| ||||||||| | | | | ||| |||| || |||||| |||||||| |||||||||
Sbjct 255 -T-TTTGTTCCACAAT--C-GTCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGAC 309
Query 673 CCAGAATCAGAAGTGATAGCTTTATCACCAAAAACACTAATGGCAACAAACAGATTCGTG 732
|||||| |||||||||| || ||||||||||| ||||||||||| |||||||||||| |
Sbjct 310 CCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACAAACAGATTCATA 369
Query 733 TGTGAGATCTGCAACAAAGGTTTCCAAAGAGACCAGAATC-TACAGCTTCA-TAGAAGAG 790
|||||| |||||||||||||||| ||||||||||| || | | || ||||| || ||||
Sbjct 370 TGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAACTTCACAAG-AGAG 427
Query 791 GTCACAATCTGCCATGGAAGCTGAAACAAAGATCCAACAAAGAAGTGATAAGGAAGAAAG 850
| || ||||| || |||||||| ||||||||||| |||||||| ||| | ||||||||||
Sbjct 428 GACATAATCTACCGTGGAAGCTTAAACAAAGATCAAACAAAGATGTGGTTAGGAAGAAAG 487
Query 851 TGTATGTATGTCCAGAAG-CAAGTTGTGTCCACCATGATCCATCTAGAGCTCTCGGTGAC 909
| ||||| ||||||| || || | |||||||| || ||||||| |||||||| ||||||
Sbjct 488 TTTATGTTTGTCCAG-AGCCAGGCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGAC 546
Query 910 TTAACCGGAATCAAGAAGCATTTCTGT-AGAAAACATGGAGAGAAGAAGTGGAAATGTGA 968
||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||
Sbjct 547 TTAACCGGAATCAAGAAGCATTTCT-TCAGAAAACATGGCGAGAAGAAATGGAAATGTGA 605
Query 969 TAAGTGTTCAAAGAAATATGCTGTTCAATCAGACTGCAAGGCTCATTCTAAGACTTGTGG 1028
|||||||| ||||||||||| || |||||||| || ||||||||| |||||||||||||
Sbjct 606 AAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGG 665
Query 1029 CACCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCTAGGAGGGATAGTTTCATAAC 1088
||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 666 CACTAAAGAATACAAATGCGACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAAC 725
Query 1089 TCATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCAAG 1130
||||||||||||||| || ||||| || ||||||| ||||||
Sbjct 726 TCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAG 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102308710710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5