BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478786
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13840.1 | Symbols: | GRAS family transcription factor | ch... 2449 0.0
AT3G14025.1 | Symbols: | pseudogene of scarecrow transcription... 957 0.0
> AT3G13840.1 | Symbols: | GRAS family transcription factor |
chr3:4555305-4556837 REVERSE LENGTH=1533
Length=1533
Score = 2449 bits (1326), Expect = 0.0
Identities = 1468/1537 (96%), Gaps = 8/1537 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTTGGAAGAAACAGAACCACCAAACCAGACTCTAGATCATGTCCTAAGCTGGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGTTGGAAGAAACAGAACCACCAAACCAGACTCTAGATCATGTCCTAAGCTGGCTT 60
Query 61 GAGGATTCTGTGTCCTTATCCCCATTACCAGGATTTGATGATTCTTATTTGCTCCACGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGATTCTGTGTCCTTATCCCCATTACCAGGATTTGATGATTCTTATTTGCTCCACGAG 120
Query 121 TTTGATGGGACTCAAACGTGGGAATGGGATCAGACTCAAGATCCGGAACATGGTTTTATT 180
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTTGATGGGTCTCAAACGTGGGAATGGGATCAGACTCAAGATCCGGAGCATGGTTTTATT 180
Query 181 CAAAGCTATAGTCAAGATCTTAGTGCA---TATGTGGGTTTTGAAGCAACTAACCTGGAA 237
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 181 CAAAGCTATAGTCAAGATCTTAGTGCAGCATATGTTGGTTGTGAAGCAACTAACCTGGAA 240
Query 238 GTGGTAACAGAAGCTCCATCCATTGATTTGGATCCTCCACCTGAACTTCAGCAACAAAAT 297
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 241 GTGGTAACAGAAGCTCCATCCATTGATTTGGATCTTCCACCTGAAATTCAGCAACCAAAC 300
Query 298 GATCAGTCCAGGAAAAGGAGCCGCGACGGGGTTATCGAGGCACAACAGGTGAAAAAATCG 357
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 301 GATCAGTCCAGGAAAAGGAGCCACGACGGGTTTCTCGAGGCACAACAGGTGAAAAAATCG 360
Query 358 GCAAGGAGCAAGAGAAAAGCAATCAAGTCTAGTGAGAAGAGCAGCAAAGATGGTAACAAG 417
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GCAAGGAGCAAGAGAAAAGCAATCAAGTCTAGTGAGAAGAGCTCCAAAGATGGTAACAAG 420
Query 418 GAAGGTAGATGGGCAGAGAAATTGCTTAACCCTTGTGCCTTGGCCATTACGGCAAGTAAC 477
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGGGAGATGGGCAGAGAAGTTGCTTAACCCTTGTGCCTTGGCCATTACGGCAAGTAAC 480
Query 478 TCATCAAGGGTTCAACATTACCTTTGTGTTCTCTCTGAACTGGCCTCTTCTTCTGGCGAT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TCATCAAGGGTTCAACATTACCTTTGTGTTCTCTCTGAACTGGCCTCTTCTTCTGGTGAT 540
Query 538 GCTAATCGTCGGCTTGCAGCTTTTGGTCTTCGGGCTTTGCAACATCATCTTTCCTCATCA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTAATCGTCGGCTTGCAGCTTTTGGTCTTCGGGCTTTGCAACATCATCTTTCCTCATC- 599
Query 598 TCCTCTGTGTCATCATCTTTTTGGCCTGTTTTTACTTTTGCTTCAGCAGAAGTGAAGATG 657
| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 -C-TCTGTGTCATCATCCTTTTGGCCTGTTTTTACTTTTGCTTCAGCGGAAGTGAAGATG 657
Query 658 TTTCAAAAGACTCTGCTTAAGTTCTACGAGGTAAGCCCTTGGTTTGCTTTGCCTAATAAC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 TTTCAAAAGACTCTGCTTAAGTTCTACGAGGTAAGCCCTTGGTTTGCTTTGCCTAACAAC 717
Query 718 ATGGCAAACTCAGCTATCCTGCAGATTCTAGCACAGGATCCCATATATAAAAAGGATCTT 777
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 718 ATGGCAAACTCAGCTATCCTGCAGATTTTAGCACAGGATCCCAAAGATAAAAAGGATCTT 777
Query 778 CATATTCTTGATATTGGTGTTTCTCACGGTATGCAATGGCCCACTTTGTTGGAGGCTCTG 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CATATTATTGATATTGGTGTTTCTCACGGTATGCAATGGCCCACTTTGTTGGAGGCTCTG 837
Query 838 AGCTGCAGACCAGAAGGACCTCCTCCTTGTGTTCGAATAACCGTTGTATCTGATCTAACC 897
|||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 838 AGCTGCAGACTAGAAGGACCTCCTCCTCGTGTTCGAATAACCGTTATATCAGATCTAACC 897
Query 898 GCAGACATACCTTTCTCTGTTGGTCCACCAGCTTACAATTATGGTTCTCAACTCCTTGGC 957
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 898 GCAGACATACCTTTCTCTGTTGGTCCACCAGGTTACAATTATGGTTCTCAACTCCTAGGC 957
Query 958 TTTGCTCGGTCTCTCAAGATCAACCTTCAGATTAGTGTACTTGACAAGTTCCAGCTCATT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 958 TTTGCTCGGTCTCTCAAGATCAACCTTCAGATTAGTGTACTTGACAAGTTACAACTCATT 1017
Query 1018 GATACCTCACCTCACGAGACCTTAATAGTCTGTGTTCAGTTTAGGCTGCATCCCCTGAAG 1077
||||||||||||||||||| |||||| || |||| ||||||||||||||||| |||||||
Sbjct 1018 GATACCTCACCTCACGAGAACTTAATCGTGTGTGCTCAGTTTAGGCTGCATCACCTGAAG 1077
Query 1078 CATAGCATCCCTGATGAGAGAGGCGAGACTTTGAAAGCACTGAGAAGTTTGAGGCCAAAA 1137
||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1078 CATAGCATCAATGATGAGAGAGGCGAGACTTTGAAAGCAGTGAGAAGTTTAAGGCCAAAA 1137
Query 1138 GGAGTG-TTCCTTTGTGAGAACAATGGAGAATGCAGTACTAGTGTGGACTTTGCAGCAGG 1196
|||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1138 GGAGTGGTTC-TTTGTGAGAACAATGGAGAATGCAGTAGTAGTGCGGACTTTGCAGCAGG 1196
Query 1197 ATTCTCGAAGAAACTTGAGTATCTATGGAAGTTTCTGGATTCAACAAGCTCAGGATTTAA 1256
||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1197 ATTCTCGAAGAAACTGGAGTATGTATGGAAGTTTCTGGATTCAACAAGCTCGGGATTTAA 1256
Query 1257 AGAAGAGAATAGTGAAGAGAGAAAACTAATGGAAGGAGAGGCAACAAAGGTGTTGATGAA 1316
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAAGAGAATAGCGAAGAGAGAAAACTAATGGAAGGAGAGGCAACAAAGGTGTTGATGAA 1316
Query 1317 TACAGGAGAGATGAATGAAGGAAAAGATAAATGGTATGAAAGGATGAGAGAAGCTGGTTT 1376
| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1317 TGCAGGAGATATGAATGAAGGAAAAGAGAAATGGTATGAGAGGATGAGAGAAGCTGGTTT 1376
Query 1377 TGCCGCAGAAGCATTTGGAGAAGATGCAATTGATGGAGCCAAATCTTTACTGAGAAAGTA 1436
| | ||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1377 TTTTGTAGAAGCATTTGAAGAAGATGCAGTTGATGGAGCCAAATCCTTACTAAGAAAGTA 1436
Query 1437 TGACAACAACTGGGAAGTAAGAATGGAAGATGGAGATACCTATGCTGGATTAATGTGGAA 1496
||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 TGACAACAATTGGGAAATAAGAATGGAAGATGGAGATACCTTTGCTGGATTAATGTGGAA 1496
Query 1497 AGGAGAGGCAGTTTCCTTTTGTTCATTGTGGAAGTAG 1533
|||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGGAGAGGCAGTTTCCTTTTGTTCATTGTGGAAGTAG 1533
> AT3G14025.1 | Symbols: | pseudogene of scarecrow transcription
factor family protein | chr3:4644898-4645705 FORWARD LENGTH=808
Length=808
Score = 957 bits (518), Expect = 0.0
Identities = 715/811 (88%), Gaps = 9/811 (1%)
Strand=Plus/Plus
Query 726 CTCAGCTATCCTGCAGATTCTAGCACAGGATCCCATATATAAAAAGGATCTTCATATTCT 785
||| |||||||| |||||| ||||||| ||||||||| | |||||||||||||||||| |
Sbjct 4 CTCTGCTATCCTTCAGATTTTAGCACAAGATCCCATAGAGAAAAAGGATCTTCATATTTT 63
Query 786 TGATATTGGTGTTTCTCACGGTATGCAATGGCCCACTTTGTTGGAGGCTCTGAGCTGCAG 845
|||||||||||| |||||||| |||||||||||||||||| ||||||||| ||| |
Sbjct 64 TGATATTGGTGTGTCTCACGGCATGCAATGGCCCACTTTGCTGGAGGCTCAAAGC--AAT 121
Query 846 ACCAGAAGGACCTCCTCCTTGTGTTCGAATAACCGT-TGTATCTGATCTAACCGCAGACA 904
|||| |||||||||||||| ||||||||||||| || | |||| ||||| |||| |||||
Sbjct 122 ACCACAAGGACCTCCTCCTCGTGTTCGAATAACTGTCT-TATCCGATCTCACCGAAGACA 180
Query 905 TACCTTTCTCTGTTGGTCCACCAGCTTACAATTATGGTTCTCAACTCCTTGGCTT-TGCT 963
||||||||||||||||||||||||| |||| ||||||| ||||| || |||| || ||||
Sbjct 181 TACCTTTCTCTGTTGGTCCACCAGCGTACATTTATGGTACTCAATTCATTGG-TTGTGCT 239
Query 964 CGGTCTCTCAAGATCAACCTTCAGATTAGTGTACTTGACAAGTTCCAGCTCATTGATACC 1023
| ||| ||||| || ||||| || || ||||| |||||||||||||| |||||| |||||
Sbjct 240 CAGTCCCTCAACATAAACCTCCAAATCAGTGTGCTTGACAAGTTCCAACTCATTCATACC 299
Query 1024 TCACCTCACGAGACCTTAATAGTCTGTGTTCAGTTTAGGCTGCATCCCCTGAAGCATAGC 1083
|| || | ||||| |||||| || |||||||| ||||||||||||| ||||||||||||
Sbjct 300 TCTCCGCGCGAGAACTTAATCGTGTGTGTTCATTTTAGGCTGCATCAGCTGAAGCATAGC 359
Query 1084 ATCCCTGATGAGAGAGGCGAGACTTTGAAAGCACTGAGAAGTTTGAGGCCAAAAGGAGT- 1142
|||| |||||||||| | ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 360 ATCCTTGATGAGAGAAGTGAGGCTTTGAAAGCACTGAGAAGTTTGGGGCCAAAAGGAGTG 419
Query 1143 GTTCCTTTGTGAGAACAATGGAGAATGCAGTACTAGTGTGGACTTTGCAGCAGGATTCTC 1202
||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 420 GTT-CTTTGTGAGAACAATGGAGAATGCAGTAGAAGTATTGACTTTGCAGCAGGATTCTC 478
Query 1203 GAAGAAACTTGAGTATCTATGGAAGTTTCTGGATTCAACAAGCTCAGGATTTAAAGAAGA 1262
||||||||| || |||||||||| |||| ||||||||| |||||||||||| ||||||||
Sbjct 479 GAAGAAACTGGACTATCTATGGATGTTT-TGGATTCAAAAAGCTCAGGATTCAAAGAAGA 537
Query 1263 GAATAGTGAAGAGAGAAAACTAATGGAAGGAGAGGCAACAAAGGTGTTGATGAATACAGG 1322
|||||||||||| || || | |||||||| |||||| ||||| ||||||| ||| |
Sbjct 538 GAATAGTGAAGAAAGGAAGCGAATGGAAGAAGAGGCGGCAAAGTTGTTGATAAATGGAAA 597
Query 1323 AGAGATGAATGAAGGAAAAGATAAATGGTATGAAAGGATGAGAGAAGCTGGTTTTGCCGC 1382
| | ||||||||||| ||||| ||||| ||||| ||||||||| |||||| |||||| ||
Sbjct 598 ATATATGAATGAAGGGAAAGAAAAATGTTATGAGAGGATGAGAAAAGCTGTTTTTGCTGC 657
Query 1383 AGAAGCATTTGGAGAAGATGCAATTGATGGAGCCAAATCTTTACTGAGAAAGTATGACAA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAGCATTTGGAGAAGATGCAATTGATGGAGCCAAATCTTTACTGAGAAAGTATGACAA 717
Query 1443 CAACTGGGAAGTAAGAATGGAAGATGGAGATACCTATGCTGGATTAATGTGGAAAGGAGA 1502
||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 718 CAATTGGGAAATAAGAATGGACGATGGAGATACCTTTGCTGGATTAATGTGGAAAGGAGA 777
Query 1503 GGCAGTTTCCTTTTGTTCATTGTGGAAGTAG 1533
||| |||||||||||||| |||||||||||
Sbjct 778 AGCAATTTCCTTTTGTTCAGTGTGGAAGTAG 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5