BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478787

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13845.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   562    1e-159


> AT3G13845.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast 
hits to 22 proteins in 10 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:4557321-4558579 REVERSE 
LENGTH=505
Length=505

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 406/451 (90%), Gaps = 24/451 (5%)
 Strand=Plus/Plus

Query  1    TTCTGAGAAGGAGAGAAGTTGTCGCCGATAGCAAAGAGACGAAGAAGGGCATTGACGTAT  60
            |||||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||| ||
Sbjct  18   TTCTGAGAAGGAGAGAAGTTGTCGCCGATA-CCAAGAGAGGAACAAGCGCATTGACGGAT  76

Query  61   TAGACTGAAAAAATGTCGGTGAAACCCACAGTCGCTTTGAGAGGTATCTTAGTAGGTGGA  120
            |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  77   TAGAC-AAAAAAATGTCGGTGAAACCCACAGTTGCTTTGAGAGGTATCTTAGTAGGTGGA  135

Query  121  GTGGCTATATTTGCAAAAGTCGCGGCTGCAATGAAAGCAGCTGGTGGTGTTAAGCTTGGT  180
            ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  136  GTGGCGATATTTGCAAAAGTTGCGGCTGCAATGAAAGCAGCTGGAGGTGTTAAGCTTGGT  195

Query  181  GCAGCTGCTACAGCTATGACCGTGGCTGCAACCGCTGCTGTGAGTGGAGGATCTAAGCAA  240
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  196  GCAGCTGCTACAGCTATGACCGTGGCTGCAACCGCTGCTGTTAGTGGAGGTTCTAAGCAA  255

Query  241  GATCAAAAGCAAGATGCTTCCAAGGCACCACCACCTTCTAAATAAGTAGTATTATTCATG  300
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  256  GATCAAAAGCAAGATGCTTCCAAGGCACCACCACCTTCTAAATAAGAAGTATTGTTCATG  315

Query  301  TAATTCTTCCTT---G---C---T-----Ga-a-a-a-aaaaaa---CTCCATGAAAGAC  339
            ||||||||||||   |   |   |     || | | | ||||||   || ||| ||||||
Sbjct  316  TAATTCTTCCTTACTGAATCCAATAACAAGAGAGAGACAAAAAAAAACTTCATCAAAGAC  375

Query  340  CACTCTAGTTTTTCAAGGGTTCTATGGAGTTAAA-TGTAATGTTATTGAAAGTGTTAAAG  398
            || ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  376  CATTCTAGTTTTTCAAAGGTTCTATGGAGTTAAAATGTAATGTTGTTGAAAGTGTTAAAT  435

Query  399  CTGTAGTTTTCTTTTGTAATAACTTCTTTAT  429
            ||||||||||||||||||||||||||| |||
Sbjct  436  CTGTAGTTTTCTTTTGTAATAACTTCTCTAT  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5