BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478788 Length=810 Score E Sequences producing significant alignments: (Bits) Value AT3G13850.1 | Symbols: LBD22 | LOB domain-containing protein 22... 1271 0.0 AT3G13855.1 | Symbols: U6-26 | U6-26; snRNA | chr3:4560655-4561... 99.0 6e-20 > AT3G13850.1 | Symbols: LBD22 | LOB domain-containing protein 22 | chr3:4559908-4561020 FORWARD LENGTH=1113 Length=1113 Score = 1271 bits (688), Expect = 0.0 Identities = 774/814 (95%), Gaps = 11/814 (1%) Strand=Plus/Plus Query 1 ATGCCCTCAGGCAAACCTTCTTCTGTATTCCCTTTACATCCCAAACCAACACCATTAAAA 60 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 3 ATGCCCTCAGGCAAACCTTCTTCTGTCTTCCCTTTACATCCCAAACCTACACCATTAAAA 62 Query 61 CCTTCTAGCAGCAGCACCAGCAACACCAATAGCAGCACAAACCAAGCCTGCGCCGCCTGC 120 ||||||||||||| || ||||| || ||| | |||||||||||||||||||||||||||| Sbjct 63 CCTTCTAGCAGCACCAGCAGCAGCAACAACAACAGCACAAACCAAGCCTGCGCCGCCTGC 122 Query 121 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTCGCTCCTTATTTCCCTCACGAC 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 123 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTTGCTCCTTATTTCCCTCACGAC 182 Query 181 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 242 Query 241 ATCAAATCCCTTACCCCTCCTGAGAAAGACGCAGCTATGCATACAATCATGTTTCAATCC 300 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 243 ATTAAATCCCTTACCCCTCCAGAGAAAGACGCAGCTATGCATACAATCATGTTTCAGTCC 302 Query 301 GATGCTCGTGCCAGTGATCCTGTTGATGGATGCTATGGCATCATAAGAAAGCTTCAATAC 360 ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 303 GATGCTCGTGCCAATGATCCCGTTGATGGATGCTATGGCATCATAAAAAAGCTTCAATAC 362 Query 361 CAGATCGAATACACCAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 420 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 CAGATCGAATACACAAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 422 Query 421 GACCGTGCTCATCA---TCATCATCAAGAACCGCAAATCCAGATGCAAGAACCAGAGGAT 477 |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| Sbjct 423 GACCGTGCTCATCAACATCATCATCAAGAACCGCATATCCAGATGCAAGAACAAGAGGAT 482 Query 478 CTCTCAAGTTTTTCGAGTTCTTGTGATATAAACAACAACAACTCGATTCCTTACAATTAC 537 ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 483 CTCTCGAGTTTTTCGAGTTCTTGTGATCTAAACAACAACAATTCGATTCCTTACAATTAC 542 Query 538 GCTCTGAATCACATTCAAGAACCAAATCAACAACAACAACAATATTGTTCTTCCGGTAAT 597 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 543 CCTCTGAATCACATTCAAGAACCAAATCAACAACAA------TATTGTTCTTCCGGTAAT 596 Query 598 AACTTCAATGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGACA 657 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 597 AACTTCAGTGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGATA 656 Query 658 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTTAAGCCTGTGGAAGAGGTT 717 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 657 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTAAAGCCTGTAGAAGAGGTT 716 Query 718 TCTAGCGAAAGACACGAGTTCGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 777 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 717 TCTAGCGAACGACACGAGTTTGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 776 Query 778 TTGCCT-CCAGCACAATTCATCATTTCTTCTTAG 810 |||||| || ||||||| |||||||||||||||| Sbjct 777 TTGCCTTCC-GCACAATACATCATTTCTTCTTAG 809 > AT3G13855.1 | Symbols: U6-26 | U6-26; snRNA | chr3:4560655-4561570 FORWARD LENGTH=916 Length=916 Score = 99.0 bits (53), Expect = 6e-20 Identities = 60/63 (95%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 749 AAGCTTTCGTTGAACAACGGAAACTCGACTTGCCT-CCAGCACAATTCATCATTTCTTCT 807 ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| Sbjct 1 AAGCTTTCGTTGAACAACGGAAACTCGACTTGCCTTCC-GCACAATACATCATTTCTTCT 59 Query 808 TAG 810 ||| Sbjct 60 TAG 62 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39433805395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5