BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478788
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13850.1 | Symbols: LBD22 | LOB domain-containing protein 22... 1271 0.0
AT3G13855.1 | Symbols: U6-26 | U6-26; snRNA | chr3:4560655-4561... 99.0 6e-20
> AT3G13850.1 | Symbols: LBD22 | LOB domain-containing protein
22 | chr3:4559908-4561020 FORWARD LENGTH=1113
Length=1113
Score = 1271 bits (688), Expect = 0.0
Identities = 774/814 (95%), Gaps = 11/814 (1%)
Strand=Plus/Plus
Query 1 ATGCCCTCAGGCAAACCTTCTTCTGTATTCCCTTTACATCCCAAACCAACACCATTAAAA 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 3 ATGCCCTCAGGCAAACCTTCTTCTGTCTTCCCTTTACATCCCAAACCTACACCATTAAAA 62
Query 61 CCTTCTAGCAGCAGCACCAGCAACACCAATAGCAGCACAAACCAAGCCTGCGCCGCCTGC 120
||||||||||||| || ||||| || ||| | ||||||||||||||||||||||||||||
Sbjct 63 CCTTCTAGCAGCACCAGCAGCAGCAACAACAACAGCACAAACCAAGCCTGCGCCGCCTGC 122
Query 121 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTCGCTCCTTATTTCCCTCACGAC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTTGCTCCTTATTTCCCTCACGAC 182
Query 181 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 242
Query 241 ATCAAATCCCTTACCCCTCCTGAGAAAGACGCAGCTATGCATACAATCATGTTTCAATCC 300
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 243 ATTAAATCCCTTACCCCTCCAGAGAAAGACGCAGCTATGCATACAATCATGTTTCAGTCC 302
Query 301 GATGCTCGTGCCAGTGATCCTGTTGATGGATGCTATGGCATCATAAGAAAGCTTCAATAC 360
||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 303 GATGCTCGTGCCAATGATCCCGTTGATGGATGCTATGGCATCATAAAAAAGCTTCAATAC 362
Query 361 CAGATCGAATACACCAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CAGATCGAATACACAAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 422
Query 421 GACCGTGCTCATCA---TCATCATCAAGAACCGCAAATCCAGATGCAAGAACCAGAGGAT 477
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 423 GACCGTGCTCATCAACATCATCATCAAGAACCGCATATCCAGATGCAAGAACAAGAGGAT 482
Query 478 CTCTCAAGTTTTTCGAGTTCTTGTGATATAAACAACAACAACTCGATTCCTTACAATTAC 537
||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 483 CTCTCGAGTTTTTCGAGTTCTTGTGATCTAAACAACAACAATTCGATTCCTTACAATTAC 542
Query 538 GCTCTGAATCACATTCAAGAACCAAATCAACAACAACAACAATATTGTTCTTCCGGTAAT 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 543 CCTCTGAATCACATTCAAGAACCAAATCAACAACAA------TATTGTTCTTCCGGTAAT 596
Query 598 AACTTCAATGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGACA 657
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 AACTTCAGTGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGATA 656
Query 658 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTTAAGCCTGTGGAAGAGGTT 717
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 657 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTAAAGCCTGTAGAAGAGGTT 716
Query 718 TCTAGCGAAAGACACGAGTTCGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 777
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCTAGCGAACGACACGAGTTTGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 776
Query 778 TTGCCT-CCAGCACAATTCATCATTTCTTCTTAG 810
|||||| || ||||||| ||||||||||||||||
Sbjct 777 TTGCCTTCC-GCACAATACATCATTTCTTCTTAG 809
> AT3G13855.1 | Symbols: U6-26 | U6-26; snRNA | chr3:4560655-4561570
FORWARD LENGTH=916
Length=916
Score = 99.0 bits (53), Expect = 6e-20
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 749 AAGCTTTCGTTGAACAACGGAAACTCGACTTGCCT-CCAGCACAATTCATCATTTCTTCT 807
||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct 1 AAGCTTTCGTTGAACAACGGAAACTCGACTTGCCTTCC-GCACAATACATCATTTCTTCT 59
Query 808 TAG 810
|||
Sbjct 60 TAG 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5