BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478791
Length=2877
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding... 4778 0.0
AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding pro... 1234 0.0
> AT3G13870.1 | Symbols: RHD3 | Root hair defective 3 GTP-binding
protein (RHD3) | chr3:4565412-4571260 REVERSE LENGTH=2910
Length=2910
Score = 4778 bits (2587), Expect = 0.0
Identities = 2786/2882 (97%), Gaps = 14/2882 (0%)
Strand=Plus/Plus
Query 1 TATTTCTTTTGTCAAATAAGA-AGAAGCACTTATGACCTTACGAGAAGCAGTCGTCAAGG 59
||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||||| |
Sbjct 1 TATTTCTTTTGTCAAATTAGAGAGAAGCTCTTATGACCTTAGGAGAAGCAGTCGTCAAAG 60
Query 60 CACCGGTGCATCAATAGCGAGCTCGAGCCTAGAGATCTCTGTACCATTCTCTTCTTCATT 119
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 CACCGGTGCATCAATAACGAGCTCGAGCCTAGAGATCTCTGTCCCATTCTCTTCGTCATT 120
Query 120 CATCACTCTATCTGCGTTTCGTTGAGAGATAATGGATGCCGCTTGCTCTACCCAGCTTAT 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CATCACTCTATCTGCGTTTCGTTGAGCGATAATGGATGCCGCTTGCTCTACCCAGCTTAT 180
Query 180 CGATGGAGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAGGTTAAATT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATGGGGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAGGTTAAATT 240
Query 240 GGAAGAATGTGGTCTTTCATATGCGGTTGTCTCGATTATGGGTCCACAAAGTAGCGGGAA 299
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 241 GGACGAATGTGGTCTTTCATACGCGGTTGTCTCGATTATGGGTCCACAAAGTAGTGGGAA 300
Query 300 GAGTACACTCTTGAATCATTTGTTTGGAACCAACTTTAGAGAAATGGATGCATTTAGAGG 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGTACGCTCTTGAATCATTTGTTTGGAACCAACTTTAGAGAAATGGATGCATTTAGAGG 360
Query 360 AAGGTCTCAGACAACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATTGAGCCTTGCAC 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGTCTCAGACGACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATTGAGCCTTGCAC 420
Query 420 CGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGATGATACTGCTTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGATGATACTGCTTT 480
Query 480 CGAGAAACAGAGTGCTCTTTTTGCACTTGCTGTCTCAGACATAGTTCTTATCAACATGTG 539
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 481 CGAGAAACAGAGTGCTCTTTTTGCACTTGCAGTCTCAGACATAGTTCTTATAAACATGTG 540
Query 540 GTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCTTTTAAAGACTGTGTTCCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCTTTTAAAGACTGTGTTCCA 600
Query 600 GGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAA 660
Query 660 AACACGGACGCCACTGGAAAATTTAGAACCAGTGCTGAGGGAAGACATTCAAAAGATATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACACGGACGCCACTGGAAAATTTAGAACCAGTGCTGAGGGAAGACATTCAAAAGATATG 720
Query 720 GGATTCAGTCCCCAAGCCTCAGGCACACAAAGAAACTCCACTTAGTGATTTCTTCAATGT 779
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 721 GGATTCAGTTCCCAAGCCTCAGGCCCACAAAGAAACTCCACTTAGCGATTTCTTCAATGT 780
Query 780 TGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAGGAAGAACAGTTCAAAGAGCAGGTCTA 839
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 781 TGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAAGAAGAGCAATTCAAAGAGCAGGTCTA 840
Query 840 TAATTTGAGACAACGGTTCTTCCAATCTGTTGCACCTGGCGGGCTTGCTGGTGATCGACG 899
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 CAATTTGAGACAACGGTTCTTCCAATCTGTCGCACCTGGCGGGCTTGCTGGTGATCGACG 900
Query 900 AGGAGTTGTCCCTGCCAATGCTTTTGCTTTTAGTGCAAAACAGATGTGGCAAGTCATTAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 AGGAGTTGTCCCTGCCAATGCTTTTGCTTTTAGTGCAAAACAGATGTGGCAAGTCATCAA 960
Query 960 AGACAACAAAGACTTGGATCTTCCAGCACACAAGGTCATGGTAGCAACTGTGCGATGCGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 AGACAACAAAGACTTGGATCTTCCAGCACACAAGGTCATGGTAGCAACTGTGCGATGTGA 1020
Query 1020 GGAAATTGCCAATGAAAAATTCTCTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAAATTGCCAATGAAAAATTCTCTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGA 1080
Query 1080 AGAGGCTGTACAGTCTGGTCCTGTTTCCGGATTTGGAAGAAAGCTGAACTCAATTCTCCA 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1081 AGAGGCTGTACAGTCTGGTCCTGTTTCCGGATTTGGAAGAAAGCTGAGCTCAATTCTCCA 1140
Query 1140 ATCCAGCTTATCAGAGTATGACACAGAAGCTACATACTTTGAAGAAAGTGTAAGATCATC 1199
| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1141 AGCAAGCTTATCAGAGTATGACACAGAAGCGACATACTTTGAAGAAAGTGTTAGATCATC 1200
Query 1200 CAAGAGACAACAGCTGCAAGAAAAGTTATTGCAACTTGTTCAACCAACTTTCCAAGACGT 1259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAAGAGGCAACAGCTGCAAGAAAAGTTATTGCAACTTGTTCAACCAACTTTCCAAGACGT 1260
Query 1260 GCTTGGACATTTGAGATCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT 1319
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTTGGACATTTGAGGGCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT 1320
Query 1320 GAATGCTGGAGAAGGGTTTTCATCATCTGCGAAATCCTGCGCTCAGTCATGCATATCTAA 1379
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGATGCTGGAGAAGGGTTTTCATCATCTGCGAAATCCTGCGCTCAGTCATGCATATCTAA 1380
Query 1380 GTTTGATAAAGGATGTGAAGAGGCTGTTATTGAACAAGCAAATTGGGATACATCTAAAAC 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1381 GTTTGATAAAGGATGTGAAGAGGCTGTTATTGAACAAGCAAAATGGGATACATCTAAAAC 1440
Query 1440 TCGGGAAAAGCTTGAGCGTGATATTGAAGCCCATATCTCTTCTGTCCGTGCTGCAAAGTT 1499
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1441 TCGGGAAAAGCTTGAGCGTGATATTGAAGCTCATATCTCTTCTGTCCGTACTGCAAAGTT 1500
Query 1500 GGCTGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCATTATCCGGACCGGTGGA 1559
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1501 GGCTGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCCTTATCTGGACCGGTGGA 1560
Query 1560 AGCTCTTCTGGATGGGGCTAATGATGAAACATGGCCAGCAATAAGAAAGCTACTTAGACG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AGCTCTTCTGGATGGGGCTAATGATGAAACATGGCCAGCAATAAGAAAGCTACTTAGACG 1620
Query 1620 GGAAGGAGAATTGGCTGTCTATGGTCTCTCCGACGCATTATCTGGTTTCGAAATGGACGA 1679
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1621 GGAAGGAGAATTGGCTGTCTATGGTCTCTCCAACGCATTATCTGGTTTCGAAATGGACGA 1680
Query 1680 AGAAACACGGAGTAAAATGCTTGGTGATCTCGAGAACTATGCACGGGGTATTGTTGAAAC 1739
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1681 AGAAACACGGAGTAAAATGCTTGCTGATCTCGAGAACTATGCACGAGGTATTGTTGAAAC 1740
Query 1740 CAAGGCAAAGGAAGAGGCTGGAAGAGTGTTGATGCGCATGAAGGATAGATTTGCTACAAT 1799
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1741 CAAGGCAAAGGAAGAGGCTGGAAGAGCGATGATGCGCATGAAGGATAGATTTGCTACAAT 1800
Query 1800 CTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGACATCAGAGC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 CTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGACATCAGAGC 1860
Query 1860 AATCACAAAAATGGCTCGTTCTGCATCCTTGAAGCTGCTGTCTGTTATGGCTATTATACG 1919
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1861 AATTACAAAAATGGCTCGTTCTGCGTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACG 1920
Query 1920 CTTGGATGATGAACTCGATAATATTGAGAAGACATTGACGCTCTCTCTGTTTAATTCTAC 1979
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1921 CTTGGATGATGAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTAC 1980
Query 1980 GGGCAACAATGCTACTAGCAAGAGCATCAGCACAATTGATTCACTTGCCTCAAGCACTTG 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GGGCAACAATGCTACTAGCAAGAGCATCAGCACAATTGATTCACTTGCCTCAAGCACTTG 2040
Query 2040 GGAGCAGGTTGCACCAGAAAAGACTTTGATCACGCCTGTGCAGTGTAAATCACTGTGGAG 2099
|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2041 GGAGAAGGTTGCACCAGAAAAGACGTTGATCACACCTGTGCAGTGTAAATCACTGTGGAG 2100
Query 2100 GCAATTCAAGAACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAAGCTAA 2159
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GCAATTTAAGAACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAAGCTAA 2160
Query 2160 CCGACGAAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGG 2219
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGG 2220
Query 2220 ATTCAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGTTCTTTTTGTGGG 2279
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2221 ATTTAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGTTCTATTTGTCGG 2280
Query 2280 ATACCTTATTTCCAAAGCCTTGTGGGTGCAATTAAATATTTCAGGAGAATTCCGCAACGG 2339
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2281 ATACCTTGTATCCAAAGCCTTGTGGGTGCAATTAAATATTTCAGGAGAATTCCAAAACGG 2340
Query 2340 CGCGCTACCTGGACTTCTCTCCTTGTCAACCAAATTCATTCCAACGGTCATGAACCTCCT 2399
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2341 CGTGCTACCTGGACTTCTCTCTTTGTCAACCAAATTCATTCCAACGGTCATGAACCTCCT 2400
Query 2400 CAAAAAGCTTGCGGAAGAAGGACAAGCACCACCCACAAATAGCAACCAATCAATGAACTC 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 CAAAAAGCTTGCGGAAGAAGGACAAGCACCACCCACAAATAGCAACCAATCAATGAACTC 2460
Query 2460 AACAGCTCAATCCGAGGTTACAACCAATGGAGAAagcagcagcagcagcagTAGCTCTGG 2519
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2461 TACAGCTCAATCCGAGGTTACAACCAATGGAGAAAGCAGCAGCAGCAG---TAGCTCTGG 2517
Query 2520 TTCATCTCCAGCAAAAAACGTACCCATTGATACAAGTGCATAGAAGGAAGAACTATACAA 2579
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2518 TTCATCTCCAGCAAAAAACGTACCCATTGATACAAGTGCATAGAACAAAGAAGTATACAA 2577
Query 2580 GCTTAAGCTGTTGTGCGAGCACAGGAAGCTAGAAACTTAAAATTCGTTACCCTTTAAAAA 2639
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 2578 GCTTAAGCTGTTGTGCTAGCCCACGAAGCTAGAAACTTAAAATTCGTTACCCTTTCAAAA 2637
Query 2640 AGGTAGCTCTCAGTTTTGGTGTTGATCAGAGAGATTCACCGAGAGCCATATGTTTTATGT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2638 AGGTAGCTCTCAGTTTTGGTGTTGATCAGAGAGATTCACCGAGAGCCATATGTTTTATGT 2697
Query 2700 CTCCGATGGCGAT-GGTTCC-TCTTGCAGGTGCCAAAGTGATCTTGTATGTTCGTAGACT 2757
|||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 2698 CTCCGATGGC-ATTGGTTCCCTCTTGCAGGTGTCAAAGTGATCTTGTATGTTCCTAGACT 2756
Query 2758 AAGATTCTGATGCAGACAAACa-aaaaaaaCTCAAGATTTATTTGTTTACGAGTTCTGTA 2816
|||||||||||||||||||| | ||||||||||| ||||| |||| |||||||||||
Sbjct 2757 AAGATTCTGATGCAGACAAAAACAAAAAAACTCATGATTTGTTTG----CGAGTTCTGTA 2812
Query 2817 GTGATGTGGTTTATTGTATCTGATAAAA-GAATATTACTCGAGGAGAAACCGGTTTTTGA 2875
||||||||||| |||||||||||||||| |||| ||||| || || ||||||||||||||
Sbjct 2813 GTGATGTGGTT-ATTGTATCTGATAAAAAGAATGTTACTTGAAGAAAAACCGGTTTTTGA 2871
Query 2876 TT 2877
||
Sbjct 2872 TT 2873
> AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding protein
(RHD3) | chr1:27446236-27450862 FORWARD LENGTH=2415
Length=2415
Score = 1234 bits (668), Expect = 0.0
Identities = 1728/2227 (78%), Gaps = 124/2227 (6%)
Strand=Plus/Plus
Query 172 CAGCTTATCGATGGAGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAG 231
||||| ||||| ||||||||| | | ||||| ||| | | ||||||||||| || ||
Sbjct 64 CAGCTCATCGACGGAGATGGTATATACAATGTCTCTCGCATCGATCATTTCATTAAAGAT 123
Query 232 GTTAAA-TTGGAAGAATGTGGTCTTTCATATGCGGTTGTCTCGATTATGGGTCCACAAAG 290
|| ||| || | ||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 124 GTGAAACTT-GCAGACTGTGGCCTTTCTTATGCTGTTGTCTCTATTATGGGTCCTCAAAG 182
Query 291 TAGCGGGAAGAGTACACTCTTGAATCATTTGTTTGGAACCAACTTTA-GAGAAATGGATG 349
||||||||| |||||||| ||||| |||||||||||||| ||||||| | || |||||||
Sbjct 183 TAGCGGGAAAAGTACACTATTGAACCATTTGTTTGGAACAAACTTTATG-GAGATGGATG 241
Query 350 CATT-TAGAGGAAGGTCTCAGACAACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATT 408
|||| || |||||||||||||| || || || || ||| |||| ||||| || |||||
Sbjct 242 CATTCAAG-GGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGATGTGCCGGTATA 300
Query 409 GAGCCTTGCACCGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGAT 468
|||||||||||| |||| |||||||||||||| |||||||| |||||||| || ||||||
Sbjct 301 GAGCCTTGCACCCTTGTAATGGATTTAGAGGGCACCGATGGCAGAGAGCGAGGAGAGGAT 360
Query 469 GATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGCTGTCTCAGACATAGTTCTT 528
||||| || ||||| ||||||||||||||||| || |||||| |||| || || | ||||
Sbjct 361 GATACGGCATTCGAAAAACAGAGTGCTCTTTTCGCTCTTGCTATCTCTGATATCG-TCTT 419
Query 529 -ATCAACATGTGGTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCT-TTTAA 586
||||||||||||||||| || ||||| || |||||||| || ||||||||||| || ||
Sbjct 420 GATCAACATGTGGTGTCACGACATTGGCCGTGAACAAGCTGCTAATAAACCTCTCTTGAA 479
Query 587 AGACTGTGTTCCAGGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTG 646
| ||||| || ||||| |||||||| ||||||||||| || || ||||| || ||||||
Sbjct 480 A-ACTGTCTTTCAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTG 538
Query 647 TTATAAGAGATAAAACACGGACGCCACTGGAAAATTTAGAACCAGTGC-TGAGGGAAGAC 705
| ||| |||||||||| ||||| || ||||||||||||| || || | | || |||||
Sbjct 539 TAATACGAGATAAAACCCGGACACCGTTGGAAAATTTAGAGCCTGT-CTTAAGAGAAGAT 597
Query 706 ATTCAAAAGATATGGGATTCAGTCCCCAAGCCTCAGGCACACAAAGAAACTCCACTTAGT 765
||||| |||||||||||||| || || |||||| | |||||||| |||||||| || |||
Sbjct 598 ATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGGAAACTCCTCTAAGT 657
Query 766 GA-TTTCTTCAATGTTGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAGGAAGAACAGTT 824
|| ||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||
Sbjct 658 GACTTT-TTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAGAAGGAAGAACAGTT 716
Query 825 CAAAGAGCAGGTCT-ATAATTTGAGACAACGGTTCTTCCAATCTGTTGCACCTGGCGGGC 883
||||||||| | | || |||||||||||||||| | || ||| ||||||| || || |
Sbjct 717 TAAAGAGCAGAT-TGCTAGTTTGAGACAACGGTTCATGCATTCTATTGCACCGGGAGGTC 775
Query 884 TTGCTGGTGATC-GACGAGGAGTTG-TCCCTGCC-AATGCTTTTGCTTTTAGTGCAAAAC 940
||||||| || | || |||||| || | || ||| | | |||||| ||||||||| | |
Sbjct 776 TTGCTGGAGA-CAGAAGAGGAG-TGATTCCAGCCTCA-GGTTTTGCATTTAGTGCAGATC 832
Query 941 AGATGTGGCA-AGTCATTAAAGACAACAAAGA-CTTGGATCTTCCAGCACACAAGGTCAT 998
|||| ||| | |||||| ||||| || || || ||| || |||||||| |||||||||||
Sbjct 833 AGATCTGG-AGAGTCATCAAAGAGAATAAGGATCTT-GACCTTCCAGCCCACAAGGTCAT 890
Query 999 GGTAGCAACTGTGCGATGCGAGGAAATTGCCAATGA-AAAATT-CTCTAGTTTTATCGCG 1056
||| || |||||||| ||||| |||||||| ||||| || || | | | ||| || |
Sbjct 891 GGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAGTTTGCGC-A-TTTCATTACA 948
Query 1057 AATGAGAATTGGCGCGAGTTGGAAGAGGCTGTAC-AGTCTGGTCCTGTTTCCGGA-TTTG 1114
|| ||| | |||||| | |||| |||| || | || | ||||| |||| | | ||||
Sbjct 949 AACGAGGACTGGCGCAAACTGGATGAGGAGGTGCAAG-CCGGTCCAGTTT-CTAATTTTG 1006
Query 1115 G-AAGAAAGCTGAACT-CAATTCTCCAATCCAGCTTATCAGAGTATGACACAGAAGCTAC 1172
| ||| | ||| ||| | |||||| || |||||||||| |||||| || |||||
Sbjct 1007 GAAAG-AGGCT-TACTACCATTCTCGGTTCTTGCTTATCAGAATATGACGGGGAGGCTAC 1064
Query 1173 ATACTTTGAAGAAAGTGTAAGATCATCCAAGAGACAACAGC-TGCAAGAAAAG-TTATTG 1230
|| ||| || ||| |||| ||||| || |||||||| |||| || |||||||| || |
Sbjct 1065 ATTCTTCGATGAAGGTGTCAGATCTTCGAAGAGACAGCAGCTTG-AAGAAAAGCTT-CTC 1122
Query 1231 CAACTTGTTCAA-CCAAC-TTTCCAAGACGTGCTT-GGACATTTGAGATCTGGAGCACTT 1287
||||||| | || ||| | ||| ||||| || || |||||| | |||| ||| ||||
Sbjct 1123 CAACTTG-TGAATCCAGCGTTT-CAAGATGT-ATTGGGACATATAAGATGGGGAATACTT 1179
Query 1288 GAAAACTTCAAGAATGCTTTTGAGAAGGCCTTGAATGC--TGGAGAAGGGTTTTCATCAT 1345
||||| || ||| | ||||||| |||| ||| | || ||| ||||||||||| |||
Sbjct 1180 GAAAAGTTTAAGGCTTCTTTTGATAAGG-CTT-TAGGCATTGGTGAAGGGTTTTCTTCAG 1237
Query 1346 C-TGCGAA-ATCCTGCGCTC-AGTCATGCAT-ATCTAAGTTTGATAAAGGA-TGTGAAGA 1400
| | | || || || | || || | ||||| | | || || ||| || || |||| ||
Sbjct 1238 CTTCCCAAGAT--TG-GTTCAAGGCTTGCATGACCCAA-TTCGATGAA-GAGTGTGCAG- 1291
Query 1401 G-GCTGTTATTGAACAAGCAAATTGGGATACATCTAAAACT-CGGGAAAAGCTTG-AGCG 1457
| || | ||||||||||| |||||||| ||||| |||| | ||||| ||||| | | ||
Sbjct 1292 GTGCCATCATTGAACAAGCCAATTGGGACACATC-AAAAGTACGGGACAAGCTAGTA-CG 1349
Query 1458 TGATATTGAAGCCCATATCTCTTCTGTCCGTG-CTGCAAAGTTGGCTGAACTGACTACTC 1516
||| ||||| || || || || ||||| || | || | ||||| ||||||| || | ||
Sbjct 1350 TGACATTGAGGCTCACATTTCCTCTGTGCG-GACTTCCAAGTTATCTGAACTTACCAGTC 1408
Query 1517 TGTATGAGTCAAAACTAAATGTAGCATTATCCGGACCGGTGGAAGCTCTT-CTGGATGGG 1575
| || ||||||||| | ||| ||| ||||| | ||||||||||||| || |||||||
Sbjct 1409 TATACGAGTCAAAAGTTCATGAAGCTTTATCAGAACCGGTGGAAGCT-TTGTTGGATGGA 1467
Query 1576 GCTAATGATGAAACATGGCCAGCA-A-T-AAGAAAGCTACTTAGACGGGAAGGAGAAT-T 1631
|| || |||||||| ||| |||| | | ||| ||||| | | | || ||| |||| |
Sbjct 1468 GCCAACGATGAAACGTGG--AGCACAGTAAAG-AAGCTTCATCGGCGTGAAACTGAATCT 1524
Query 1632 GGCTGTCTATGGTCTCTCCG-A-CGCATTATCTGGTTTCGAAATGGACGAAGAAACACGG 1689
|| || | ||| ||| | | |||||| ||||||| || ||||| ||||||||| |
Sbjct 1525 -GCAGTATCTGG--ACTCAGTAGTGCATTAGCTGGTTTTGACATGGAAGAAGAAACA-AG 1580
Query 1690 AG-TAAAATGCTTGGTGA-TC-TCGAGAACTATGCACGGGGTATTGTTGAAACCAAGGCA 1746
|| || |||| || || | || || | |||||| | ||| | ||||||| ||||||
Sbjct 1581 AGATAGAATG-GTGAAGAGCCTTC-AGGATTATGCAAGAGGTGTCATTGAAACGAAGGCA 1638
Query 1747 AAGGAAGAGGCTG-GAAGAGTGTTGATGCGCATGAAGGATAGATTTGCTACAATCTTCAG 1805
|| |||||||||| | | || |||||||| |||||||| || |||| ||||||||||||
Sbjct 1639 AAAGAAGAGGCTGTG-CGGGTTTTGATGCGTATGAAGGAAAGGTTTGGTACAATCTTCAG 1697
Query 1806 CCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGA-CATCAGAGCAATCA 1864
||||||||||||||||||||||||||||||||| ||||| ||||| | || ||||||| |
Sbjct 1698 CCATGATTCTGATTCAATGCCACGTGTTTGGACCGGAAAAGAGGATCTTC-GAGCAATTA 1756
Query 1865 CAAAAATG-GCTCGTTCTGCATCCTTGAAGCTGCTGTCTGTTATGGCTATTATACGCTTG 1923
| ||| | ||||| ||||| ||||||||| |||| || || |||||| | || || |||
Sbjct 1757 CTAAA-TCAGCTCGATCTGCTTCCTTGAAGTTGCTCTCAGTAATGGCTGTCATTCGATTG 1815
Query 1924 GATGATGAAC-TCGATAATATTGAGAAGACATTGAC-GCTCTCTCTGTTTAATTCTACGG 1981
| ||||||| | ||||| || ||||||||| | || | | ||||| | || | ||
Sbjct 1816 GGGGATGAACCT-GATAACATCGAGAAGACACTAACTG-TAGCTCTGCTGGATCCAACAA 1873
Query 1982 -GCAACAATGCTACTA-GCAAGAGCATCAGCA-CAAT-TGATTCACTTGCCTCAAGCACT 2037
| || || || ||| | || ||||||| || || | |||| |||| || |||||||||
Sbjct 1874 AG-AATGATACTTCTAAGAAA-AGCATCA-CAACA-TCTGATCCACTGGCTTCAAGCACT 1929
Query 2038 TGGGA-GCAGGTTGCACCAGAAAAGA-CTTTGATCACGCCTGTGCAGTGTAAATC-ACTG 2094
||||| | ||||| || || || || |||||||||| || ||||| |||||||| | |
Sbjct 1930 TGGGATG-AGGTTCCATCATCAA-GAACTTTGATCACACCGGTGCAATGTAAATCTA-TA 1986
Query 2095 TGGAGGCAATTCAAGA-ACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGA 2153
||||| || ||||||| | || ||||| ||||| || || || ||||| || ||||||||
Sbjct 1987 TGGAGACAGTTCAAGACA-GAAACAGAGTATACAGTGACTCAAGCCATATCCGCACAGGA 2045
Query 2154 AGCTAACCGACGAA-ATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTG 2212
|| ||| | || | || |||||| | || |||||||||||||| ||||| || | |
Sbjct 2046 GGCGAACAGGCGTGGA-AATAACTGGTTACCTCCTCCATGGGCAATTCTTGCATTGATCG 2104
Query 2213 TTCTTGGATTCAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGT-TCTT 2271
| ||||||||||| ||||| |||||||| |||||||| ||||| | |||| || || |
Sbjct 2105 TCCTTGGATTCAACGAATTCATGACTCTTTTAAGAAACCCTCTCTA--TCTTGGTGTCAT 2162
Query 2272 -TTTGTGGGATACCTTATTTCCAAAGC-CTTGTGGGTGCAATTAAATATTTCAGGAGAAT 2329
||||| | | |||| | | ||||| || |||| |||||| |||| | || ||||
Sbjct 2163 GTTTGTCGCTTTCCTTCTGGCAAAAGCACT-GTGGACGCAATTGGATATCCCTGGCGAAT 2221
Query 2330 TCCGCAA 2336
|||||||
Sbjct 2222 TCCGCAA 2228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142975787550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5