BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478793

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13882.2 | Symbols:  | Ribosomal protein L34 | chr3:4574521-...   420    1e-116


> AT3G13882.2 | Symbols:  | Ribosomal protein L34 | chr3:4574521-4576048 
FORWARD LENGTH=802
Length=802

 Score =  420 bits (227),  Expect = 1e-116
 Identities = 324/365 (89%), Gaps = 29/365 (8%)
 Strand=Plus/Plus

Query  346  AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC  497

Query  406  TATTAGGCGTAAACGAAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG  465
            ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  498  TATAAGGCGTAAACGGAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG  557

Query  466  AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACTGCCTAGAATCTCTCTAA  525
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  558  AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACAGCCTAGAATCTCTCTAA  617

Query  526  TCTTTCTATTGATGAATCTCCGTTTATTCAGGCTAGAAAAC-TG----T-C--T-TC-T-  574
            |||||| ||||||||||||||| |||||||||||||||||| ||    | |  | || | 
Sbjct  618  TCTTTCCATTGATGAATCTCCGGTTATTCAGGCTAGAAAACCTGAAACTTCCATCTCCTA  677

Query  575  --TA-Ctt-t-tt-ttAT----GT------GT-T-GTTGAACTCAGAATCGAACTGAAGT  616
              || ||| | || ||||    ||      || | ||||| |||||||| || |||||||
Sbjct  678  AATAACTTGTCTTCTTATCCATGTTCTCATGTGTTGTTGATCTCAGAATTGATCTGAAGT  737

Query  617  TAAAATTTTAAAGATCTCAGCTCCTTTGTAATGGATAGTTTATATCAAGGAATCCttttt  676
            ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  738  TAAAATTTTAACGATCTCAGCTCTTTTGTAATGGATAGTTTATATCAATGAATCCTTTTT  797

Query  677  ttCTC  681
            | |||
Sbjct  798  TCCTC  802


 Score =  337 bits (182),  Expect = 1e-91
 Identities = 194/200 (97%), Gaps = 0/200 (0%)
 Strand=Plus/Plus

Query  149  CAGAACAATCTCAGATCTTCGTTTCAACAGATAGCTCCTCAGGGACAAGAAATCCCTCCG  208
            |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct  100  CAGAACAATCTCAGATCTTCTTTTCAATACATAGCTCCTCAGGGACAAGAAATCCCGCCG  159

Query  209  TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  160  TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT  219

Query  269  GCTTCGCTCCAGGAACTCAACGAACGTGGGTTTCTTTACCCTTCTGGTCTTCCTTCACTC  328
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  220  GCTTCGCTCCAGGAACTCAACGAACGTGGATTTCTTTACCCTTCTGGTCTTCCTTCACTC  279

Query  329  GAATTCTTCTTACCAGAAGT  348
            ||||||||||| ||||||||
Sbjct  280  GAATTCTTCTTGCCAGAAGT  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32953600432


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5