BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478793 Length=681 Score E Sequences producing significant alignments: (Bits) Value AT3G13882.2 | Symbols: | Ribosomal protein L34 | chr3:4574521-... 420 1e-116 > AT3G13882.2 | Symbols: | Ribosomal protein L34 | chr3:4574521-4576048 FORWARD LENGTH=802 Length=802 Score = 420 bits (227), Expect = 1e-116 Identities = 324/365 (89%), Gaps = 29/365 (8%) Strand=Plus/Plus Query 346 AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC 497 Query 406 TATTAGGCGTAAACGAAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG 465 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 TATAAGGCGTAAACGGAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG 557 Query 466 AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACTGCCTAGAATCTCTCTAA 525 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 558 AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACAGCCTAGAATCTCTCTAA 617 Query 526 TCTTTCTATTGATGAATCTCCGTTTATTCAGGCTAGAAAAC-TG----T-C--T-TC-T- 574 |||||| ||||||||||||||| |||||||||||||||||| || | | | || | Sbjct 618 TCTTTCCATTGATGAATCTCCGGTTATTCAGGCTAGAAAACCTGAAACTTCCATCTCCTA 677 Query 575 --TA-Ctt-t-tt-ttAT----GT------GT-T-GTTGAACTCAGAATCGAACTGAAGT 616 || ||| | || |||| || || | ||||| |||||||| || ||||||| Sbjct 678 AATAACTTGTCTTCTTATCCATGTTCTCATGTGTTGTTGATCTCAGAATTGATCTGAAGT 737 Query 617 TAAAATTTTAAAGATCTCAGCTCCTTTGTAATGGATAGTTTATATCAAGGAATCCttttt 676 ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 738 TAAAATTTTAACGATCTCAGCTCTTTTGTAATGGATAGTTTATATCAATGAATCCTTTTT 797 Query 677 ttCTC 681 | ||| Sbjct 798 TCCTC 802 Score = 337 bits (182), Expect = 1e-91 Identities = 194/200 (97%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 149 CAGAACAATCTCAGATCTTCGTTTCAACAGATAGCTCCTCAGGGACAAGAAATCCCTCCG 208 |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| ||| Sbjct 100 CAGAACAATCTCAGATCTTCTTTTCAATACATAGCTCCTCAGGGACAAGAAATCCCGCCG 159 Query 209 TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT 219 Query 269 GCTTCGCTCCAGGAACTCAACGAACGTGGGTTTCTTTACCCTTCTGGTCTTCCTTCACTC 328 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 220 GCTTCGCTCCAGGAACTCAACGAACGTGGATTTCTTTACCCTTCTGGTCTTCCTTCACTC 279 Query 329 GAATTCTTCTTACCAGAAGT 348 ||||||||||| |||||||| Sbjct 280 GAATTCTTCTTGCCAGAAGT 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32953600432 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5