BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478795
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protei... 1731 0.0
AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein 10... 134 2e-30
AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain p... 69.4 7e-11
> AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protein
26 | chr3:4576744-4578027 REVERSE LENGTH=1104
Length=1104
Score = 1731 bits (937), Expect = 0.0
Identities = 1059/1115 (95%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCGTGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCCGAA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAA 60
Query 61 GAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCCATGGATGTTGGAGCTCTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCCATGGATGTTGGAGCTCTGTT 120
Query 121 CCCAAACATGCAGGCATTTCTACACATATATCTAT-GG----GTTTGCAGAGATGTGGAA 175
|| ||||||||||||| || |||||||||| | || || ||||||||||||||||||
Sbjct 121 CCTAAACATGCAGGCACTTATACACATATA-C-ATGGGTTTTGTTTGCAGAGATGTGGAA 178
Query 176 AGAGTTGTAGATTAAGATGGATAAATTATCTACGACCTGATCTTAAACGTGGAAGCTTCT 235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 AGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCT 238
Query 236 CTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCAC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 CTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTC 298
Query 296 AAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAATTCAA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 299 AAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGA 358
Query 356 GCATAAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCACCTTCATCACCATCTCT 415
|||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 359 GCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCA--T-CATCATCATCTCT 415
Query 416 CTTCCATGGCGAGTTTGCTCACCAACGTTAACCTTCCTTATCACAATGGATTCCACCCTA 475
|||||||||||||||||||||| || | |||||||||||||||||||||| ||||||
Sbjct 416 CTTCCATGGCGAGTTTGCTCAC-AA----A-CCTTCCTTATCACAATGGATTCAACCCTA 469
Query 476 CTACTGTCGACGATGAAAGTTCAAGATTCATGTCCAATATCATCACAAACACTAACCCTA 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTACAGTCGACGATGAAAGTTCAAGATTCATGTCCAATATCATCACAAACACTAACCCTA 529
Query 536 ATTTCATCACTACAAGCCACCTCTCTCTTCCTTCTCCTCATGTTATGGCCCCATTGATAT 595
||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 530 ATTTCATCACTCCAAGCCATCTCTCTCTTCCTTCTCCTCATGTTATGACCCCATTGATGT 589
Query 596 TCCCAACCTCTAGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACACAAACCAATCTC 655
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 TCCCAACCTCTAGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACCCAAACCAATCTC 649
Query 656 ATCATCAAGATAATAACTATTACAACAACCTCGACATTTTGTCAGCCACACCATCTATAA 715
|||| || ||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 650 ATCACCATGATAATAACCATTACAACAACCTCGACATTTTGTCACCCACACCAACTATAA 709
Query 716 ACAATCATCATCAACTTTCACTTTCTTCTTGTCCTCATGATAATGATCCCCAATGGCCAG 775
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 710 ACAATCATCATCAACCTTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAG 769
Query 776 CTTTACCAGATTTCCCAGCGAGTACCATTTCTGCTTTCCAAGAAACCCTTCAAGATTATG 835
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 CGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATG 829
Query 836 ACGATGCTAATAAACTCAACGTGTTTGTGACACCATACAACGAAAATGCCAAAAAGTTAT 895
| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 830 ATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTAT 889
Query 896 TATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCGCCAATATCACAAGATC 955
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 890 TATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATC 949
Query 956 ACGGCCTTCTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTGatcatcatc 1015
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 950 ACGGCCTTTTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTGATCATCAAC 1009
Query 1016 atcat-a--gagtggactcatacatcaatcacatgatcataccatcatcatcctcatcat 1072
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 ATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGT 1069
Query 1073 cGCCAATTTCTTGTGGACAGTACGTCATAACTTAA 1107
||||||| |||||||||||||||||||||||||||
Sbjct 1070 CGCCAATCTCTTGTGGACAGTACGTCATAACTTAA 1104
> AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein
103 | chr1:23719783-23721774 REVERSE LENGTH=1447
Length=1447
Score = 134 bits (72), Expect = 2e-30
Identities = 272/362 (75%), Gaps = 40/362 (11%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCGTGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCCGAA 60
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 150 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAA 209
Query 61 GAAGACGAAAAGCTCATCA-ACTACATCA-AT-TCATATGGCCATGGATGTTGGAGCTCT 117
||||| || ||||| || | | || |||| | |||| ||| ||||||||||||| |
Sbjct 210 GAAGATGAGAAGCTTATTAGA-TATATCACAACTCAT--GGCTATGGATGTTGGAG-T-- 263
Query 118 GTTCCCAAACATGCAGGCATTTCTACACATATATCTATGGGTTTGCAGAGATGTGGAAAG 177
| || | | | | | | | | | | | ||| || || |||||||||||
Sbjct 264 G-----AAG--TCC---C-TG---A-A-A-A-AGC-A-GGGCTT-CAAAGATGTGGAAAA 302
Query 178 AGTTGTAGATTAAGATGGATAAATTATCTACGACCTGATCTTAA-ACGTGGAAGCTTCTC 236
||||||||||| |||||||||| ||||| ||||||||| | | | | ||||| |||||
Sbjct 303 AGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGA-GAGGAAGGTTCTC 361
Query 237 TCCTCAAGAAGCTGCTCTT-ATCATTGAGC-TTCACAGCA-TTCTTGGTAACAGATGGGC 293
||| |||||| | || ||||| ||| |||| | | || | || ||||| |||||
Sbjct 362 TCCAGAAGAAGA-GAAATTGATCATA-AGCCTTCATGG-AGTTGTGGGAAACAGGTGGGC 418
Query 294 ACAAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATT-TCTGGAATT 352
|| || |||| ||| |||| |||||||||||||||||| | || || | | |||||||
Sbjct 419 TCATATAGCTAGTCATTTACCGGGAAGAACAGATAACGAGATTAAAAACTAT-TGGAATT 477
Query 353 CA 354
||
Sbjct 478 CA 479
> AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain
protein 95 | chr1:27975179-27977434 FORWARD LENGTH=1362
Length=1362
Score = 69.4 bits (37), Expect = 7e-11
Identities = 69/84 (82%), Gaps = 4/84 (5%)
Strand=Plus/Plus
Query 166 AGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCT-ACGACCTGATCTTAAACG 224
|||||||||||||||||||||||||||||| | |||||| | | | |||| ||||| |
Sbjct 372 AGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATTATTTGAGG-CCTGGGATTAAAAG 430
Query 225 TGG-AAGCTTCTCTCCTCAAGAAG 247
|| ||| ||| ||||||| ||||
Sbjct 431 AGGCAAG-TTCACTCCTCAGGAAG 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5