BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478797

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13910.1 | Symbols:  | Protein of unknown function (DUF3511)...   577    4e-164


> AT3G13910.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr3:4590919-4591483 REVERSE LENGTH=565
Length=565

 Score =  577 bits (312),  Expect = 4e-164
 Identities = 387/421 (92%), Gaps = 14/421 (3%)
 Strand=Plus/Plus

Query  1    CGACGACGACTCTTCTTCGTTCAGACCAAAACTCTCAAAATCAGCCATGGAGAATTATTA  60
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  6    CGACGACGACTCTTCTTCGTTCAGACCAAAACTCTCAAACTCAGCCATGGCGAATTATTA  65

Query  61   CAAAGAAATGGAACCGCCAGCTGCTGGGAACCGCCGAGACGCAGTGAAAGGTT---ACAG  117
            |         |||||||||||| |||| ||||| |||||||||||||||||||   ||||
Sbjct  66   C---------GAACCGCCAGCTTCTGGAAACCGTCGAGACGCAGTGAAAGGTTACAACAG  116

Query  118  CGGGAGCTTCGACGATTCAGCTGGCGATCAGAGTCAGACGAACGATTACCAGTTAAAGAT  177
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  117  CGGGAGCTTCGACGATTCAGCCGGCGATCAGAGTCAAACGAACGATTACCAGTTAAAGAT  176

Query  178  AAAGAAAAGCAAAAGCGTTCCAAACGCGGATCGTGCGGCGTCTAGAAGCTGGAGTTTCAG  237
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  177  AAAGAAAAGCAAAAGCGTTCCAAACGCGGATCGTGCGGCGTCAAGAAGCTGGAGTTTCAG  236

Query  238  CGATCCAGAATCGCGGAGGAAGAGAAGAGTCGCTGGCTATAAAGTTTATTCCGTTGAACA  297
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  237  CGATCCAGAATCGCGGAGGAAGAGAAGAGTCGCTGGCTACAAAGTTTATTCCGTTGAACA  296

Query  298  GAAGATGAAGGGATCCATTCGAAAGAGCTTCAAGTGGTTCAAAGACATTATCGGTATTTC  357
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  297  GAAGATGAAGGGATCCATTCGAAAGAGCTTCAAATGGTTCAAAGACATTATCGGTATTTC  356

Query  358  TTGATATATTTT-TATTTATTTTCTTAAAGAACTCTTCTTCATGCTATGAGAGTTAAATA  416
            ||||||||  || | |  | ||||||||| | ||||||||  |||| |||||||||||||
Sbjct  357  TTGATATACCTTCTCTCAACTTTCTTAAA-ATCTCTTCTTTGTGCTGTGAGAGTTAAATA  415

Query  417  T  417
            |
Sbjct  416  T  416


 Score =  152 bits (82),  Expect = 3e-36
 Identities = 109/121 (90%), Gaps = 6/121 (5%)
 Strand=Plus/Plus

Query  418  TTTCTCTTGCAACTATATCAAGGTTATATATAGAGTCTTTGATTCTTGAATGAGACAGAT  477
            ||||||||||||||||||  | |  | | | |||||||||||  ||||||||||||||||
Sbjct  450  TTTCTCTTGCAACTATATGTA-G--A-AGA-AGAGTCTTTGA-ACTTGAATGAGACAGAT  503

Query  478  AATGAATGAAATCAGTTTTCATATCTACCTGTGAATATGACCATACTTCTTCAATTACAA  537
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  504  AATGAATGAAATCAGTTTTCATATCTACATGTGAATATGACCATACTTCTTCAGTTACAA  563

Query  538  T  538
            |
Sbjct  564  T  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25770117411


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5