BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478803
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor ... 2374 0.0
> AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor
5 | chr3:4608383-4610399 FORWARD LENGTH=1576
Length=1576
Score = 2374 bits (1285), Expect = 0.0
Identities = 1509/1608 (94%), Gaps = 51/1608 (3%)
Strand=Plus/Plus
Query 1 GAAGGTGGTCATCTTTGTCTGTCTCTGTCCGAAACTCAGGAGCCCTAATCTCTGAATCCA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGTGGTCATCTTTGTCTGTCTCTGTCCGAAACTCAGGAGCCCTAATCTCTGAATCCA 60
Query 61 TCAAGAAAGCTC-TTATCTTCCTTCTTTTATGTTTCTGATTTTGCTACATATATAAATAA 119
|||||||||||| || |||||||||||||||| |||||| |||||||| |||| ||||
Sbjct 61 TCAAGAAAGCTCTTTCTCTTCCTTCTTTTATGCTTCTGAATTTGCTAC--ATAT--ATAA 116
Query 120 ACCCTCTGAGGAAAGCTAGAGAAGAAGATGATGAGTCTAGGTGGAAGTAGTGGGAGAACA 179
|| ||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 117 ACTATCTGAAGAAAGCTAGAGAATAAGATGATGAGTCTAAGTGGAAGTAGCGGGAGAACA 176
Query 180 ATAGGAAGGCCTCCATTTACACCAACACAATGGGAAGAACTGGAACATCAAGCCCTAATC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATAGGAAGGCCTCCATTTACACCAACACAATGGGAAGAACTGGAACATCAAGCCCTAATC 236
Query 240 TACAAGTACATGGTCTCTGGTGTTCCTGTCCCACCTGAGCTCATCTTCTCCATTAGAAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TACAAGTACATGGTCTCTGGTGTTCCTGTCCCACCTGAGCTCATCTTCTCCATTAGAAGA 296
Query 300 AGCTTGGACACTTCCTTGGTCTCTAGACTCCTTCCTCACCAATCCCTTGGATGGGGATGT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 AGCTTGGACACTTCCTTGGTCTCTAGACTCCTTCCTCACCAATCCCTTGGATGGGGGTGT 356
Query 360 TACCAGATGGGGTTTGGAAGAAAACCAGATCCAGAACCAGGAAGATGCAGAAGAACAGAT 419
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 TACCAGATGGGATTTGGGAGAAAACCAGATCCAGAGCCAGGAAGATGCAGAAGAACAGAT 416
Query 420 GGTAAGAAATGGAGATGCTCAAGAGAAGCTTACCCAGATTCAAAGTACTGTGAAAAACAC 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 GGTAAGAAATGGAGATGCTCAAGAGAAGCTTACCCAGATTCGAAGTACTGTGAAAAACAC 476
Query 480 ATGCACAGAGGAAGAAACCGTGCCAGAAAATCTCTTGATCAGAATCAGACAAGAACAACT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 ATGCACAGAGGAAGAAACCGTGCCAGAAAATCTCTTGATCAGAATCAGACAACAACAACT 536
Query 540 CCTCTAACATCACCATCTCTCTCATTCCCCAACAACAACAACCCAAGTCCCACCTTGtct 599
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 CCTTTAACATCACCATCTCTCTCATTCACCAACAACAACAACCCAAGTCCCACCTTGTCT 596
Query 600 tcttcttc-t--tc--a----tcttcaactacttattctgcttcttcttcttcGATGGAT 650
|||||||| | || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 597 TCTTCTTCTTCCTCTAATTCCTCTTCTACTACTTATTCTGCTTCTTCTTCTTCAATGGAT 656
Query 651 GCCTACAGTAACAGTAATAGGTTTGGTG-TTGGTGGAAGTAGTAGTCACACTAGAGGTTA 709
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 657 GCCTACAGTAACAGTAATAGGTTTGG-GCTTGGTGGAAGTAGTAGTAACACTAGAGGTTA 715
Query 710 CTTT-AACAGCCATTCTCTTGATTATCCTTATCCTTCTACTTCACCTAAACAACAACAAC 768
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 716 -TTTCAACAGCCATTCTCTTGATTATCCTTATCCTTCTACTTCACCCAAACAACAACAAC 774
Query 769 AACCTCTTCATCATGCTTCCGCTTTGTCACTTCATCAAAACACTAATTCTACTTCTCAGT 828
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 775 AAACTCTTCATCATGCTTCCGCTTTGTCACTTCATCAAAATACTAATTCTACTTCTCAGT 834
Query 829 TCAATGTCTTAGCCTCTCCTACTGACCACAAAGACTTCAGGTACTTTCAAGGAATTGGGG 888
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 835 TCAATGTCTTAGCCTCTGCTACTGACCACAAAGACTTCAGGTACTTTCAAGGGATTGGGG 894
Query 889 AGAGAGTT---GGAGTTGGGGAGAGAACGTTTTTTCCAGAAGCATCTAGAAGCTTTCAAG 945
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 895 AGAGAGTTGGAGGAGTTGGGGAGAGAACGTTCTTTCCAGAAGCATCTAGAAGCTTTCAAG 954
Query 946 ATTCTCCATACCATCATCACCAACAACCGTTAACAACAGTGATGAATGATCCGTACCACC 1005
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 955 ATTCTCCATACCATCATCACCAACAACCGTTAGCAACAGTGATGAATGATCCGTACCACC 1014
Query 1006 ACTGTAGTACTGATCATAA---GATTGatcatcatcatcagacatactcatcctcatcat 1062
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 1015 ACTGTAGTACTGATCATAATAAGATTGATCATCATCA-CA--CATACTCATCCTCATCAT 1071
Query 1063 catctcaacaacatcttcatcatgatcaagagcatgatcatcGACAGCAACAGCAACAGT 1122
|||||||||| ||||||||||||||| ||||||| | | | ||||||||||
Sbjct 1072 CATCTCAACA---TCTTCATCATGATCA------TGATCAT--A--G-A-CAGCAACAGT 1116
Query 1123 GTTTCGTTTTGGGCGCCGACATGTTCAACAAACCCACAAGAAGTGTCCTTGCAAACTCAT 1182
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1117 GTTTTGTTTTGGGCGCCGACATGTTCAACAAACCTACAAGAAGTGTCCTTGCAAACTCAT 1176
Query 1183 CAAGACAAGATCAAAATCAAGAAGAAGAGGAGAAAGATTCATCGGAGTCGTCGAAGAAGT 1242
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 1177 CAAGACAAGATCAAAATCAAGAAGAAGATGAGAAAGATTCATCAGAGTCGTCCAAGAAGT 1236
Query 1243 CTCTTCACCATTTCTTCGGTGAGGACTGGGCACAGAACAAGAACAGTTCAGATTCTTGGC 1302
|||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CTCTACATCACTTCTTTGGTGAGGACTGGGCACAGAACAAGAACAGTTCAGATTCTTGGC 1296
Query 1303 TTGACCTTTCTTCCCACCCAAGACTCGACACTGGTAATTAATTAAATAGAGCTAGCATCA 1362
||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 1297 TTGACCTTTCTTCCCACTCAAGACTCGACACTGGTAGCTAATTAAGTAGAGCTGGCATCA 1356
Query 1363 ATGATGGATCTGCACCAACACACACAACTGTGAAATGTTGAAGAAGAGTCAAATTTCACA 1422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1357 ATGATGGATCTGCACCAACACACACAACTGTGAAATGTTGAAGAAGAGTCACATTTCACA 1416
Query 1423 TCTATTTCCGTGGAAGGATGAGACAAGACACTGTTTGCAGAATCCTGTAATACATTTATG 1482
||||||||||||||| ||||||||||||||||||||||||||||| | || | |||
Sbjct 1417 TCTATTTCCGTGGAACAATGAGACAAGACACTGTTTGCAGAATCCT--A-TA--TGTAT- 1470
Query 1483 TATTTTCTATCGTTTTCTATGTGTGTTAGGTCCAACAAGAAAAAGTGATCCGACAGATAT 1542
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 T-TTTTCTATCTTTTTCTATGTGTGTTAGGTCCAACAAGAAAAAGTGATCCGACAGATAT 1529
Query 1543 ATATCTGTATGTGTTCTCTTGCTTTCTCAAGAAATCAGTTTTTATTTT 1590
|| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1530 AT--CTGTATGTGTTCTCTTGCTTTCTCAAGAAATCAGATTTTATTTT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5