BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478805
Length=2916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13990.1 | Symbols: | Kinase-related protein of unknown fun... 4390 0.0
AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3... 124 4e-27
> AT3G13990.1 | Symbols: | Kinase-related protein of unknown function
(DUF1296) | chr3:4625570-4630613 REVERSE LENGTH=2915
Length=2915
Score = 4390 bits (2377), Expect = 0.0
Identities = 2752/2929 (94%), Gaps = 42/2929 (1%)
Strand=Plus/Plus
Query 2 AAATCCTAACTTC--ttttttttttCCTCTTTTAAAGCCGTCCCCTCTCTTCTCTGTACT 59
||||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||
Sbjct 15 AAATCCTAACTTCTTTTTTTTTTTTGTTCTCTTAAAGCCGT-TCC-CTCTTCTCTGTACT 72
Query 60 CGAAACCCTAGTAGTGTGCTCTATCCGATTTTAGGGTTTAAGAGTCAAATCATTAGCATC 119
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 73 CGAAACCCTAGTAGT-TGCTCTATCCGATTTTAGGGTTTAAGAGTCGAATCATTAGCATC 131
Query 120 TAGCTTTGCCTACGCGGATCGCACTTGGTTTCGCTACTCGATCCTTGAATTTCTCTG-TT 178
|| | ||| ||||| |||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 132 TA-CCTTGATTACGCTGATCTCACTTGGTTTCGCTACTCGATCCTTGAATTTCTTTGTTT 190
Query 179 TTTGTGTGTTTCGATTTCTCCGATTCGTCTTTGATCCGTAATGGTGACTGGGTCCAGAAC 238
||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 191 TTTGTGTGTTTCGGTTTATTCGATACGTCTTTGATCCGTAATGGTGACTGGGTCCAGAAC 250
Query 239 TAGCGGTAATCGTGGGGTAGGACTCGATGATGAATCGAAAAAGATGATTCAATCGATTAA 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 251 TAGCGGTAATCGTGGGGTAGGACTCGATGATGAAGCGAAAAAGATGATTCAATCGATTAA 310
Query 299 GGAAATTGTGGGTAATCACTCCGATGCTGATATTTACACTGCCTTAAAAGAAGCTAACAT 358
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GGAAGTTGTGGATAGTCACTCCGATGCTGATATTTACACTGCCTTAAAAGAAGCTAACAT 370
Query 359 GGACGCTGACGAGGCTGTGCAGAAGCTGATTCATCAAGATCCATTCCACGAGGTGAAGAG 418
||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 371 GGATGCTAACGAGGCTGTGGAGAAGCTGATTCATCAAGATCCATTTCACGAGGTGAAGAG 430
Query 419 AAAAAGAGACAGGAAAAAAGAGGGTACAGTAGTTGGTGAGCCTGCAAACGTAAAGAAACC 478
||||||||||||||||||||||| ||||||| ||| ||||||||| ||| ||||||||||
Sbjct 431 AAAAAGAGACAGGAAAAAAGAGGATACAGTATTTGTTGAGCCTGCCAACATAAAGAAACC 490
Query 479 TCTTGAAAATGTTACCAGTGAAGTGAAGGTTCGTACACAGCCTGAACATAATGTTCGGAG 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 491 TCTTGAAAATGTTACCAGTGAAGTGAAAGTTCGTACACAGCCTGAACATAATGTTCGGAG 550
Query 539 AGGAGGCTACAGTAGGAATTTCTTCCCCAGGAACGCCGCTGCTCAACGAAATGCATCTCC 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 551 AGGAGGCTACAGTAGGAATTTCTTCCCCAGGAA---CGCTGCTCAACGAAATGCATCTCC 607
Query 599 TAGAAATCCTGCTGCTGGATCCAACAGAGAGTTTCGCGTTGTTAGGGACAACAGGTCTAA 658
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 608 TAGAAATCCTGCTACTGGATCCAACAAAGAGTTTCGCGTTGTTAGGGACAACAGGTCTAA 667
Query 659 TCCAAATGTCAATGAACAGTTGAAGCATTCTTCTGCACAGTCCTCTGGATCAAATATTAA 718
||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 TCCAAATGTTGATGAAGAGTTGAAGCATTCTTCTGCCCAGTCCTCTGGATCAAATATTAA 727
Query 719 CAAAGTGGTGGCCACTGTGAACAAATTGGGCTCAAGAGGTGGTTTGGGAAATCATAGCTC 778
||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 728 CAAAGTGGTTGCCACTGTGAACAAATTGGGCTCAAGAGGTGGTTTGGGCAATCGTAACTC 787
Query 779 TTCAGGGGCTCAAGATTCTACTGACAATTGTAATGCTCCAGCAGATGGCAGGCTCAGACA 838
||| |||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||
Sbjct 788 TTCTGGGGCTCAAGATTCAACTGACGAGTGTAATGCTCCAGCAGATGCCAGGCTCAGACA 847
Query 839 GGCTGAAATTGC-TCCTTTGCACCGTCCTATCAGTACAGAACTCCGTGGAGTTACTTTGC 897
|||||||||| | ||||||||| ||||| ||| || ||||||| |||||||||||||||
Sbjct 848 GGCTGAAATT-CGTCCTTTGCATTGTCCTGTCAATAAAGAACTCGGTGGAGTTACTTTGC 906
Query 898 CATCAACCAATTCAGTTCTTGGTG--TA-TCGTCTTCCACCGATCCAGTTCATGTACCAT 954
|||||||||||||||||||||||| || |||||||||| ||||||||||||||||| |
Sbjct 907 CATCAACCAATTCAGTTCTTGGTGTATATTCGTCTTCCAAAGATCCAGTTCATGTACCTT 966
Query 955 CTCCTGTTTCTAGATCATCACCCGTGGGAGCTATTAAACGTGAAGTAAGGGGTGGAGGTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CTCCTGTTTCTAGATCATCACCCGTGGGAGCTATTAAACGTGAAGTAAGGGGTGGAGGTT 1026
Query 1015 TAGGTGGAAAACCTTCTGAAAATGTTGGTAAAGCTCCATCTGTGCCCTCTTTTTCAGGGT 1074
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1027 TAGGTGGAAAACCTTCTGAAAATGTTGGTAAAGATCCATCTGTGCCCTCTTTTTCAGGGT 1086
Query 1075 CCTCAATTAGAAAAAGTGGACCTCCAAATGCACATCGACCATCACCATCTTCCCCAACTT 1134
|||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1087 CCTCTATTAGAAAAAATGGACCTCCAAATGCACATCG------ACCATCTTCCCCAACTT 1140
Query 1135 CAAAGATTGATCACAGTCGAACTATTGCACGAGAGTCTGTTATGCCCAGTGGTGTGGAAA 1194
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 1141 CAAAGATTGATCACAGTCGAACTACTGCACGTGAGTCTGTTATGCCCAGTGGAGTGGAAA 1200
Query 1195 AGAATAGGTCATTTTTGAACAGACAGCGTGGGAATAGAGGAAGCCAATATGCTAGAACAC 1254
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1201 AGAATAGGTCATATTTGAACAGACAGCGTGGGAATAGAGGAAGCCAATATGCTAG-A-AC 1258
Query 1255 AACAACAAGTTGGTGGCCATACAAAGGGAGCCTCACAGCACAAGGAGTGGAAGCCTAAAT 1314
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1259 -ACAACAAGTTGGTGGCCATACAAAGGGAGCCTCACAGAACAAGGAGTGGAAGCCTAAAT 1317
Query 1315 CAAATCAGAAACCTGTTGGACATAACCCTGGAGTAATTGGAACACCTACAAAGTCTCAAG 1374
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTAATCAGAAACCTGTTGGACATAACCCTGGAGTAATTGGAACACCTACAAAGTCTCAAG 1377
Query 1375 CTCGTAGTCCTGTTGATAATTCCATAAATGTGGAATCAAAAGCCGTTAAG--GCACACGA 1432
||||| |||||| |||||||||||||||||||||| || ||||||| ||| ||| | |
Sbjct 1378 CTCGTCGTCCTGCTGATAATTCCATAAATGTGGAAACAGAAGCCGTCAAGTTGCAGA--A 1435
Query 1433 TAAGCTTCCGA-ATGTTCATATAAGTGAAAGTCAGAATGTCATCATCGCAGATCATATTC 1491
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TAAGCTTTC-ACATGTTCATATAAGTGAAAGTCAGAATGTCATCATCGCAGATCATATTC 1494
Query 1492 GTGTCCCGGAAACTGACCGCTGTCAGCTTACTTTTGGTAGCTTTGTTCAAGAGGTTAATT 1551
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1495 GTGTCCCGGAGACTGACCGCTGTCAGCTAACTTTTGGTAGCTTTGTTCAAGAGTTTAATT 1554
Query 1552 CTTCAAGGAATTCA-ACATCTGCTTTCCAAGAATCATGGTCTTCAGAAGAACTTAGAGAA 1610
| |||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1555 CCTCAAGGAATTCAGA-ATCTGCTTTCGAAGAATCACACTCTTCAGAAGAAGTTAGAGAA 1613
Query 1611 TCTGATCGTAGTTCGCCAGTTACTTGTCCTGAGGCTTCAACAGATGGTCCAGGCGTTCAG 1670
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 1614 TCTGATCGTAGTTCGCCAGTTACTTGTCCTGAGGCTTCAGCAGATGGTCCGGGCGTTCTG 1673
Query 1671 CCTATCAATATTATTGATGATCACGTCAGAATTTCTGGATATGACTCACCCGTCTCGGCA 1730
|||||| | |||||||||||| |||||| ||||| ||| |||||||||||||||||||
Sbjct 1674 CCTATC---ACTATTGATGATCATGTCAGAGTTTCTAGATCTGACTCACCCGTCTCGGCA 1730
Query 1731 GTATCTGAGCCACAGTTGCCCGAACAGAAAGAAACTCATAGATCTGACAATTTGGATGAG 1790
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1731 GTATCTGAGCCACAGTTACCCGAACAGAAAGAAACTCATAGATCTGACAATTTGGATGCG 1790
Query 1791 TACTCGGGAATTCAATTACTCAATAGGAATGGTCCACCTTATACTCCTTTAGAGTTTGAA 1850
|||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1791 TACTCGGGGATTGAATTACTCAATAGGAATGGTCCACCTTATACTCCTTTGGAGTTTGAA 1850
Query 1851 CAGCAGCAAGATCTTCCCGAGTTGCAAAAAATTTCTCAGGCTTATGCCAACCATGGTAGT 1910
||||||||||||| ||| |||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 1851 CAGCAGCAAGATCCTCCGGAGTTGCAAAAATTTTCTCAGGCTTATGACAATCATGGTAGT 1910
Query 1911 TATGAATTTCCGTATTTTA-TACCTGCAATGGATGAAACCGTACGAGTTCAAGGATTACC 1969
|||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1911 TATGAATTTCCGTACTTTAGT-CCTGCAATGGATGAAACTGTACGAGTTCAAGGATTACC 1969
Query 1970 ATCTCCACAGGAGCAGGGATTCAGTACTCACATGGTAAATAATACCCCTCCATCCACTCT 2029
||||||||| ||||||||||| ||| |||||||| |||||||| |||| ||||||||| |
Sbjct 1970 ATCTCCACACGAGCAGGGATTAAGTGCTCACATGTTAAATAATGCCCCACCATCCACTAT 2029
Query 2030 TCCCATGTTGCAGCAACAACAACAGGCATCAATGCAACAGATGTATCCGCAGGTCCATGT 2089
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2030 TCCCATGTTACAGCAACAACAGCAGGCATCAATGCAACAGATGTATCCGCAGGTCCATGT 2089
Query 2090 TTCGCATTTTCCCAATCTCATGCCTTATCGTCAATTCCTCTCCCCAGTCTATGTTCCCCA 2149
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2090 TTCGCATTTTCCCAATCTCATGCCTTATCGTCAATTCCTTTCCCCAGTCTATGTTCCCCA 2149
Query 2150 AATGCCCATGCCAGGCTACTCAGGTAACCCAGCAGCATATGCACACCCTTCAAATGGCAA 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 AATGCCCATGCCAGGCTACTCAGGTAACCCAGCAGCATATGCACACCCTTCAAATGGCAA 2209
Query 2210 TAGCTATGTGCTGATGCCTGGAGGCGGTTCTCATCTCGGTTCAAATGGTGTCAAGTATGG 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TAGCTATGTGCTGATGCCTGGAGGCGGTTCTCATCTCGGTTCAAATGGTGTCAAGTATGG 2269
Query 2270 AATCCATCAGCAATATAAACCAGTTCCAACTGGTGGACCTACGGGTTTTGGGACTTACAA 2329
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2270 AATCCATCAGCAATATAAACCAGTTCCAACTGGTGGACCTGCGGGTTTTGGGACTTACAA 2329
Query 2330 CAATCCTAATGGGTATCCAATTAATCCTCCCAATGTAGTTGGAAACGCTACGGGACTTGA 2389
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CAATCCTAATGGGTATCCAACTAATCCTCCCAATGTAGTTGGAAACGCTACGGGACTTGA 2389
Query 2390 AGATCCATCTCGCATGA-AATACAAAGATGTAAATATTTACGCTCCAAATCCTCAGGCTG 2448
||||||||||||||||| || | ||| ||| ||||||||||| |||||||||||||||||
Sbjct 2390 AGATCCATCTCGCATGATAA-ATAAACATGGAAATATTTACGTTCCAAATCCTCAGGCTG 2448
Query 2449 AGACTTCTGAGATTTGGATGCAAAATCCAAGAGATCTTTCAAGCCTTCAGTCTCCATATT 2508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2449 AGACTTCTGAGATATGGATGCAAAATCCAAGAGATCTTTCAAGCCTTCAGTCTCCATATT 2508
Query 2509 ACAACGTAGCTGGACAATCGCCTCATGGCACTTATTTACCGTCCCATACAGCACACCAAT 2568
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 2509 ACAACGTAGCTGGACAATCGCCTCATGGTGCTTATTTATCATCCCATACAGCACACCAAT 2568
Query 2569 CGTTCAACCCTGCTGCGCAATCATCTCACATGCAGTTCCAGGGTCTCTTCCACCCACCAC 2628
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2569 CGTTCAACCCAACTGCGCAATCATCTCACATGCAGTTCCAGGGTCTCTTCCACCCGTCAC 2628
Query 2629 AGCCTGGTACAATGGCGAATCCGCACCACATGGGACCTGGCCTTGGTGGTAATGTTGGAG 2688
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2629 AGCCTGGTACGATGGCGAATCCGCACCACATGGGACCTGGCCTCAGTGGTAATGTTGGAG 2688
Query 2689 TTGGGGTTGTGCCCTCTCCTCCTCCGTCTCAAGTTGGTACCTATCAACAATCACACCTTG 2748
| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 2689 TCGGTGTCGTTCCCTCTCCTCCTCCGTCTCAAATTGGTACCTATCAGCAATCACAACTTG 2748
Query 2749 GTCATCCGAATTGGCCAGCAAACTTCTGAACAAAATCTAACCTTTGTCTTCTTGTCTAAT 2808
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2749 GTCATCCGAATTGGCCATCAAACTTCTGAAGAAAATCTAACCTTTGTCTTCTTGTCTAAT 2808
Query 2809 GGATTATATAATAGCCAAAAGCAAATATTTTGATTCTCCTTATGAAACGCCCAAACTCTG 2868
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2809 GGATTATATAATAGCCAAAAGCAAATATTTTGATTCTCCTTATGAAACGCC-AAACTCTG 2867
Query 2869 TTTTAAATTAATCTT-ATTTATTCAATGCATAAAATGTTCCCAGCTCTC 2916
|||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2868 TTTTAA-TTAATCTTTATTTATTCAATGCATAAAATGTTCCCAGCTCTC 2915
> AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like
3 | chr1:20227291-20230237 FORWARD LENGTH=1892
Length=1892
Score = 124 bits (67), Expect = 4e-27
Identities = 210/273 (77%), Gaps = 33/273 (12%)
Strand=Plus/Plus
Query 2008 ATAATACCCCTCCATC-C-AC-TCTTCCCATGTTGCAGCAACAACAACAGGCATCAAT-G 2063
||||| ||||| |||| | || | ||| ||||| |||||| | |||||| | || |
Sbjct 1612 ATAATGCCCCTGCATCTCTACAAC-TCCAATGTT---GCAACAGCCACAGGCGCCGATGG 1667
Query 2064 CAACAGATGTATCCGCAGGTCCATGTTTCGCATTTTCCCAAT-CTCATGCCTTATCGTCA 2122
| |||||| ||| | ||||| |||||||| |||||||||||| | ||||| ||||||||
Sbjct 1668 C-ACAGATTTATTCACAGGTTCATGTTTCACATTTTCCCAATGGT-ATGCCATATCGTCA 1725
Query 2123 ATTCCTCTCCCCAGTCTATGTTCCCCAAATGCCCATGCCAGGCTACTCAGGTAACCCAGC 2182
|||||||| ||||||||||| |||| ||| |||||| || | || | | |
Sbjct 1726 GTTCCTCTCTCCAGTCTATGTCCCCCGAATCCCCATG-CA-G-TA-T-A--T-------- 1770
Query 2183 AGCATATGCACACCCTTCAAATGGCAATAGCTATGTGCTGATGCCTGGAGGCGGTTCTCA 2242
|| | ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1771 -GC---T---CACCCTTTAAATGGCAATAGCTATGTGCTGATGCCTGGAGGCAGTTCTCA 1823
Query 2243 TCTCGGTTCAAATGGTGTCAAGTATGGAATCCA 2275
|| | | ||||||| |||| |||||||||||
Sbjct 1824 TCCCAGCGCAAATGGACTCAAATATGGAATCCA 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144932298327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5